Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4201.1 and Xcc-8004.4203.1 are separated by 221 nucleotides Xcc-8004.4203.1 and Xcc-8004.4204.1 overlap by 4 nucleotides Xcc-8004.4204.1 and Xcc-8004.4205.1 overlap by 4 nucleotides Xcc-8004.4205.1 and Xcc-8004.4206.1 are separated by 372 nucleotides
Xcc-8004.4201.1: Xcc-8004.4201.1 - FIG01210375: hypothetical protein, at 4,032,447 to 4,032,866
Xcc-8004.4201.1
Xcc-8004.4203.1: Xcc-8004.4203.1 - RNA polymerase sigma-54 factor RpoN, at 4,033,088 to 4,033,780
Xcc-8004.4203.1
Xcc-8004.4204.1: Xcc-8004.4204.1 - FIG01210014: hypothetical protein, at 4,033,777 to 4,034,130
Xcc-8004.4204.1
Xcc-8004.4205.1: Xcc-8004.4205.1 - FIG01211065: hypothetical protein, at 4,034,127 to 4,034,615
Xcc-8004.4205.1
Xcc-8004.4206.1: Xcc-8004.4206.1 - putative; ORF located using Glimmer/Genemark, at 4,034,988 to 4,035,350
Xcc-8004.4206.1
Position (kb) 4033
4034
4035 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.864 kb on + strand at 4032.885 kb on + strand at 4032.885 kb on + strand at 4032.886 kb on - strand at 4032.886 kb on - strand at 4032.886 kb on - strand at 4032.948 kb on + strand at 4032.949 kb on - strand at 4033.048 kb on + strand at 4033.048 kb on + strand at 4033.049 kb on - strand at 4033.049 kb on - strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.593 kb on - strand, within Xcc-8004.4203.1 at 4033.593 kb on - strand, within Xcc-8004.4203.1 at 4033.593 kb on - strand, within Xcc-8004.4203.1 at 4033.593 kb on - strand, within Xcc-8004.4203.1 at 4033.961 kb on + strand, within Xcc-8004.4204.1 at 4034.031 kb on + strand, within Xcc-8004.4204.1 at 4034.031 kb on + strand, within Xcc-8004.4204.1 at 4034.032 kb on - strand, within Xcc-8004.4204.1 at 4034.032 kb on - strand, within Xcc-8004.4204.1 at 4034.032 kb on - strand, within Xcc-8004.4204.1 at 4034.644 kb on + strand at 4034.644 kb on + strand at 4034.645 kb on - strand at 4034.645 kb on - strand at 4034.645 kb on - strand at 4034.766 kb on + strand at 4034.766 kb on + strand at 4034.766 kb on + strand at 4034.766 kb on + strand at 4034.767 kb on - strand at 4034.767 kb on - strand at 4034.852 kb on + strand at 4034.852 kb on + strand at 4034.852 kb on + strand at 4034.852 kb on + strand at 4034.852 kb on + strand at 4034.853 kb on - strand at 4034.853 kb on - strand at 4034.853 kb on - strand at 4034.853 kb on - strand at 4034.853 kb on - strand at 4034.875 kb on + strand at 4034.875 kb on + strand at 4034.875 kb on + strand at 4034.875 kb on + strand at 4034.875 kb on + strand at 4034.875 kb on + strand at 4034.875 kb on + strand at 4034.875 kb on + strand at 4034.876 kb on - strand at 4034.876 kb on - strand at 4034.876 kb on - strand at 4034.881 kb on + strand at 4034.881 kb on + strand at 4034.881 kb on + strand at 4034.881 kb on + strand at 4034.881 kb on + strand at 4034.882 kb on - strand at 4034.882 kb on - strand at 4034.882 kb on - strand at 4034.882 kb on - strand at 4034.882 kb on - strand at 4034.882 kb on - strand at 4034.882 kb on - strand at 4034.952 kb on + strand at 4034.952 kb on + strand at 4034.952 kb on + strand at 4034.973 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.982 kb on + strand at 4034.983 kb on - strand at 4034.983 kb on - strand at 4034.983 kb on - strand at 4034.983 kb on - strand at 4034.983 kb on - strand at 4034.983 kb on - strand at 4034.983 kb on - strand at 4034.983 kb on - strand at 4034.983 kb on - strand at 4034.983 kb on - strand at 4035.000 kb on + strand at 4035.000 kb on + strand at 4035.000 kb on + strand at 4035.000 kb on + strand at 4035.000 kb on + strand at 4035.000 kb on + strand at 4035.001 kb on - strand at 4035.001 kb on - strand at 4035.001 kb on - strand at 4035.001 kb on - strand at 4035.001 kb on - strand at 4035.001 kb on - strand at 4035.001 kb on - strand at 4035.009 kb on - strand at 4035.009 kb on - strand at 4035.009 kb on - strand at 4035.009 kb on - strand at 4035.019 kb on - strand at 4035.019 kb on - strand at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.075 kb on + strand, within Xcc-8004.4206.1 at 4035.084 kb on - strand, within Xcc-8004.4206.1 at 4035.084 kb on - strand, within Xcc-8004.4206.1 at 4035.084 kb on - strand, within Xcc-8004.4206.1 at 4035.084 kb on - strand, within Xcc-8004.4206.1 at 4035.084 kb on - strand, within Xcc-8004.4206.1 at 4035.084 kb on - strand, within Xcc-8004.4206.1 at 4035.084 kb on - strand, within Xcc-8004.4206.1 at 4035.084 kb on - strand, within Xcc-8004.4206.1 at 4035.084 kb on - strand, within Xcc-8004.4206.1 at 4035.084 kb on - strand, within Xcc-8004.4206.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 4,032,825 + -1.3 4,032,825 + +2.3 4,032,825 + -0.8 4,032,825 + +3.1 4,032,825 + -2.6 4,032,825 + +0.5 4,032,825 + +0.4 4,032,825 + +1.8 4,032,825 + -2.3 4,032,825 + -2.3 4,032,825 + -0.2 4,032,826 - +0.6 4,032,826 - +2.0 4,032,826 - -2.1 4,032,826 - +0.2 4,032,826 - -1.0 4,032,826 - -0.6 4,032,826 - -1.7 4,032,826 - -0.5 4,032,826 - +1.9 4,032,826 - -0.4 4,032,826 - +0.2 4,032,826 - -2.3 4,032,826 - -0.5 4,032,826 - -0.9 4,032,826 - -2.1 4,032,864 + +0.9 4,032,885 + -1.0 4,032,885 + -1.2 4,032,886 - +0.9 4,032,886 - +1.8 4,032,886 - -2.3 4,032,948 + +0.1 4,032,949 - -0.8 4,033,048 + -2.9 4,033,048 + +1.2 4,033,049 - -0.6 4,033,049 - -2.5 4,033,072 + +1.7 4,033,072 + -0.3 4,033,072 + +0.1 4,033,072 + -1.0 4,033,072 + +2.3 4,033,072 + -1.0 4,033,072 + -1.9 4,033,072 + +1.1 4,033,072 + +0.4 4,033,073 - +0.4 4,033,073 - -0.6 4,033,073 - -1.6 4,033,073 - -1.3 4,033,073 - +1.4 4,033,073 - -0.3 4,033,073 - -0.3 4,033,073 - -1.8 4,033,073 - +1.4 4,033,073 - -1.8 4,033,073 - +1.4 4,033,073 - +0.6 4,033,073 - +3.1 4,033,073 - +1.0 4,033,073 - +1.3 4,033,193 + Xcc-8004.4203.1 0.15 +0.7 4,033,193 + Xcc-8004.4203.1 0.15 -1.9 4,033,193 + Xcc-8004.4203.1 0.15 -1.3 4,033,193 + Xcc-8004.4203.1 0.15 +0.9 4,033,193 + Xcc-8004.4203.1 0.15 -1.7 4,033,193 + Xcc-8004.4203.1 0.15 +0.5 4,033,193 + Xcc-8004.4203.1 0.15 +1.4 4,033,193 + Xcc-8004.4203.1 0.15 +2.7 4,033,193 + Xcc-8004.4203.1 0.15 +1.1 4,033,194 - Xcc-8004.4203.1 0.15 +1.2 4,033,194 - Xcc-8004.4203.1 0.15 -1.2 4,033,194 - Xcc-8004.4203.1 0.15 -1.6 4,033,194 - Xcc-8004.4203.1 0.15 +1.9 4,033,194 - Xcc-8004.4203.1 0.15 +0.5 4,033,211 + Xcc-8004.4203.1 0.18 +0.2 4,033,211 + Xcc-8004.4203.1 0.18 -0.2 4,033,211 + Xcc-8004.4203.1 0.18 +0.0 4,033,211 + Xcc-8004.4203.1 0.18 -0.7 4,033,211 + Xcc-8004.4203.1 0.18 +0.2 4,033,211 + Xcc-8004.4203.1 0.18 -1.8 4,033,211 + Xcc-8004.4203.1 0.18 -1.0 4,033,211 + Xcc-8004.4203.1 0.18 +1.0 4,033,211 + Xcc-8004.4203.1 0.18 -0.1 4,033,211 + Xcc-8004.4203.1 0.18 +1.0 4,033,212 - Xcc-8004.4203.1 0.18 +1.1 4,033,212 - Xcc-8004.4203.1 0.18 +2.1 4,033,212 - Xcc-8004.4203.1 0.18 +0.1 4,033,212 - Xcc-8004.4203.1 0.18 -2.6 4,033,212 - Xcc-8004.4203.1 0.18 +0.9 4,033,212 - Xcc-8004.4203.1 0.18 +0.3 4,033,212 - Xcc-8004.4203.1 0.18 +3.6 4,033,212 - Xcc-8004.4203.1 0.18 -0.1 4,033,212 - Xcc-8004.4203.1 0.18 +1.7 4,033,592 + Xcc-8004.4203.1 0.73 +0.0 4,033,592 + Xcc-8004.4203.1 0.73 +1.1 4,033,592 + Xcc-8004.4203.1 0.73 -0.5 4,033,592 + Xcc-8004.4203.1 0.73 -1.8 4,033,592 + Xcc-8004.4203.1 0.73 -2.5 4,033,592 + Xcc-8004.4203.1 0.73 +0.6 4,033,592 + Xcc-8004.4203.1 0.73 +1.9 4,033,592 + Xcc-8004.4203.1 0.73 +0.5 4,033,593 - Xcc-8004.4203.1 0.73 -1.8 4,033,593 - Xcc-8004.4203.1 0.73 -1.9 4,033,593 - Xcc-8004.4203.1 0.73 -2.2 4,033,593 - Xcc-8004.4203.1 0.73 -0.2 4,033,961 + Xcc-8004.4204.1 0.52 -2.8 4,034,031 + Xcc-8004.4204.1 0.72 -2.0 4,034,031 + Xcc-8004.4204.1 0.72 -2.5 4,034,032 - Xcc-8004.4204.1 0.72 +1.9 4,034,032 - Xcc-8004.4204.1 0.72 +0.4 4,034,032 - Xcc-8004.4204.1 0.72 -2.6 4,034,644 + -3.0 4,034,644 + +1.0 4,034,645 - -0.7 4,034,645 - +0.8 4,034,645 - -3.7 4,034,766 + -0.9 4,034,766 + +1.0 4,034,766 + -0.0 4,034,766 + -0.7 4,034,767 - +1.8 4,034,767 - -0.4 4,034,852 + +0.9 4,034,852 + -0.7 4,034,852 + +1.5 4,034,852 + -2.9 4,034,852 + -1.8 4,034,853 - -0.8 4,034,853 - +0.8 4,034,853 - -1.7 4,034,853 - -2.2 4,034,853 - +0.5 4,034,875 + +2.0 4,034,875 + -2.2 4,034,875 + -2.7 4,034,875 + -1.0 4,034,875 + +0.7 4,034,875 + +0.5 4,034,875 + +1.7 4,034,875 + +0.7 4,034,876 - -0.9 4,034,876 - -0.2 4,034,876 - +1.2 4,034,881 + -2.0 4,034,881 + -0.9 4,034,881 + +1.0 4,034,881 + +0.2 4,034,881 + +1.7 4,034,882 - -1.8 4,034,882 - +2.8 4,034,882 - -0.6 4,034,882 - -2.0 4,034,882 - -1.3 4,034,882 - +3.4 4,034,882 - +0.7 4,034,952 + -1.5 4,034,952 + -0.5 4,034,952 + -0.6 4,034,973 + -3.2 4,034,982 + -1.0 4,034,982 + -2.0 4,034,982 + +0.8 4,034,982 + +2.4 4,034,982 + -1.3 4,034,982 + +1.5 4,034,982 + +0.6 4,034,982 + -1.0 4,034,982 + +1.4 4,034,982 + -0.0 4,034,982 + +2.2 4,034,982 + +2.8 4,034,982 + +1.2 4,034,982 + +2.9 4,034,982 + +1.2 4,034,982 + -0.4 4,034,982 + -0.8 4,034,982 + -2.4 4,034,982 + +0.8 4,034,982 + +0.8 4,034,982 + -0.8 4,034,982 + -1.4 4,034,982 + +2.3 4,034,983 - +1.0 4,034,983 - +1.1 4,034,983 - +0.0 4,034,983 - -1.3 4,034,983 - -0.4 4,034,983 - -1.6 4,034,983 - +0.4 4,034,983 - -0.8 4,034,983 - +1.0 4,034,983 - -0.6 4,035,000 + -0.5 4,035,000 + -0.8 4,035,000 + -0.2 4,035,000 + -0.7 4,035,000 + -1.8 4,035,000 + +2.1 4,035,001 - +0.3 4,035,001 - -0.6 4,035,001 - +2.4 4,035,001 - -2.7 4,035,001 - +0.1 4,035,001 - +1.2 4,035,001 - -0.8 4,035,009 - +1.0 4,035,009 - -2.3 4,035,009 - +3.2 4,035,009 - +0.4 4,035,019 - +0.6 4,035,019 - -3.1 4,035,075 + Xcc-8004.4206.1 0.24 -1.9 4,035,075 + Xcc-8004.4206.1 0.24 -1.9 4,035,075 + Xcc-8004.4206.1 0.24 -0.5 4,035,075 + Xcc-8004.4206.1 0.24 -3.7 4,035,075 + Xcc-8004.4206.1 0.24 +0.3 4,035,075 + Xcc-8004.4206.1 0.24 -2.8 4,035,075 + Xcc-8004.4206.1 0.24 -1.6 4,035,075 + Xcc-8004.4206.1 0.24 -0.6 4,035,075 + Xcc-8004.4206.1 0.24 +4.5 4,035,075 + Xcc-8004.4206.1 0.24 -0.8 4,035,075 + Xcc-8004.4206.1 0.24 -1.5 4,035,075 + Xcc-8004.4206.1 0.24 +1.6 4,035,075 + Xcc-8004.4206.1 0.24 -1.1 4,035,075 + Xcc-8004.4206.1 0.24 -1.3 4,035,075 + Xcc-8004.4206.1 0.24 +0.0 4,035,084 - Xcc-8004.4206.1 0.26 +0.7 4,035,084 - Xcc-8004.4206.1 0.26 +0.4 4,035,084 - Xcc-8004.4206.1 0.26 -2.5 4,035,084 - Xcc-8004.4206.1 0.26 -1.8 4,035,084 - Xcc-8004.4206.1 0.26 +0.2 4,035,084 - Xcc-8004.4206.1 0.26 -0.3 4,035,084 - Xcc-8004.4206.1 0.26 +0.7 4,035,084 - Xcc-8004.4206.1 0.26 -2.0 4,035,084 - Xcc-8004.4206.1 0.26 -0.0 4,035,084 - Xcc-8004.4206.1 0.26 +6.3
Or see this region's nucleotide sequence