Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3938.1 and Xcc-8004.3939.1 overlap by 4 nucleotides Xcc-8004.3939.1 and Xcc-8004.3940.1 overlap by 4 nucleotides
Xcc-8004.3938.1: Xcc-8004.3938.1 - Type I restriction-modification system, specificity subunit S (EC 3.1.21.3), at 3,812,748 to 3,814,064
Xcc-8004.3938.1
Xcc-8004.3939.1: Xcc-8004.3939.1 - Putative DNA-binding protein in cluster with Type I restriction-modification system, at 3,814,061 to 3,815,155
Xcc-8004.3939.1
Xcc-8004.3940.1: Xcc-8004.3940.1 - Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72), at 3,815,152 to 3,817,338
Xcc-8004.3940.1
Position (kb) 3814
3815
3816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 3813.095 kb on + strand, within Xcc-8004.3938.1 at 3813.095 kb on + strand, within Xcc-8004.3938.1 at 3813.139 kb on + strand, within Xcc-8004.3938.1 at 3813.139 kb on + strand, within Xcc-8004.3938.1 at 3813.140 kb on - strand, within Xcc-8004.3938.1 at 3813.211 kb on - strand, within Xcc-8004.3938.1 at 3813.211 kb on - strand, within Xcc-8004.3938.1 at 3813.247 kb on + strand, within Xcc-8004.3938.1 at 3813.248 kb on - strand, within Xcc-8004.3938.1 at 3813.251 kb on + strand, within Xcc-8004.3938.1 at 3813.391 kb on + strand, within Xcc-8004.3938.1 at 3813.392 kb on - strand, within Xcc-8004.3938.1 at 3813.577 kb on + strand, within Xcc-8004.3938.1 at 3813.641 kb on + strand, within Xcc-8004.3938.1 at 3813.642 kb on - strand, within Xcc-8004.3938.1 at 3813.642 kb on - strand, within Xcc-8004.3938.1 at 3813.697 kb on + strand, within Xcc-8004.3938.1 at 3813.713 kb on + strand, within Xcc-8004.3938.1 at 3813.856 kb on + strand, within Xcc-8004.3938.1 at 3813.860 kb on + strand, within Xcc-8004.3938.1 at 3813.860 kb on + strand, within Xcc-8004.3938.1 at 3813.861 kb on - strand, within Xcc-8004.3938.1 at 3813.862 kb on + strand, within Xcc-8004.3938.1 at 3814.236 kb on + strand, within Xcc-8004.3939.1 at 3814.674 kb on + strand, within Xcc-8004.3939.1 at 3814.794 kb on + strand, within Xcc-8004.3939.1 at 3814.949 kb on - strand, within Xcc-8004.3939.1 at 3814.983 kb on + strand, within Xcc-8004.3939.1 at 3814.984 kb on - strand, within Xcc-8004.3939.1 at 3815.149 kb on + strand at 3815.150 kb on - strand at 3815.249 kb on + strand at 3815.249 kb on + strand at 3815.250 kb on - strand at 3815.250 kb on - strand at 3815.345 kb on + strand at 3815.345 kb on + strand at 3815.345 kb on + strand at 3815.345 kb on + strand at 3815.346 kb on - strand at 3815.547 kb on + strand, within Xcc-8004.3940.1 at 3815.617 kb on + strand, within Xcc-8004.3940.1 at 3815.633 kb on + strand, within Xcc-8004.3940.1 at 3815.633 kb on + strand, within Xcc-8004.3940.1 at 3815.787 kb on + strand, within Xcc-8004.3940.1 at 3815.945 kb on + strand, within Xcc-8004.3940.1 at 3816.113 kb on + strand, within Xcc-8004.3940.1 at 3816.113 kb on + strand, within Xcc-8004.3940.1 at 3816.113 kb on + strand, within Xcc-8004.3940.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 3,813,095 + Xcc-8004.3938.1 0.26 -1.8 3,813,095 + Xcc-8004.3938.1 0.26 +1.7 3,813,139 + Xcc-8004.3938.1 0.30 +0.2 3,813,139 + Xcc-8004.3938.1 0.30 +1.5 3,813,140 - Xcc-8004.3938.1 0.30 -0.5 3,813,211 - Xcc-8004.3938.1 0.35 +1.1 3,813,211 - Xcc-8004.3938.1 0.35 -0.2 3,813,247 + Xcc-8004.3938.1 0.38 +2.7 3,813,248 - Xcc-8004.3938.1 0.38 -2.8 3,813,251 + Xcc-8004.3938.1 0.38 -0.6 3,813,391 + Xcc-8004.3938.1 0.49 -3.7 3,813,392 - Xcc-8004.3938.1 0.49 +1.2 3,813,577 + Xcc-8004.3938.1 0.63 -1.1 3,813,641 + Xcc-8004.3938.1 0.68 +2.1 3,813,642 - Xcc-8004.3938.1 0.68 +1.4 3,813,642 - Xcc-8004.3938.1 0.68 +5.4 3,813,697 + Xcc-8004.3938.1 0.72 -3.7 3,813,713 + Xcc-8004.3938.1 0.73 -0.2 3,813,856 + Xcc-8004.3938.1 0.84 +2.0 3,813,860 + Xcc-8004.3938.1 0.84 -0.1 3,813,860 + Xcc-8004.3938.1 0.84 +2.4 3,813,861 - Xcc-8004.3938.1 0.85 -0.2 3,813,862 + Xcc-8004.3938.1 0.85 +0.8 3,814,236 + Xcc-8004.3939.1 0.16 -2.1 3,814,674 + Xcc-8004.3939.1 0.56 +1.4 3,814,794 + Xcc-8004.3939.1 0.67 -2.3 3,814,949 - Xcc-8004.3939.1 0.81 -1.7 3,814,983 + Xcc-8004.3939.1 0.84 -1.0 3,814,984 - Xcc-8004.3939.1 0.84 -1.6 3,815,149 + +0.5 3,815,150 - +0.6 3,815,249 + +0.4 3,815,249 + +2.8 3,815,250 - -0.2 3,815,250 - +0.0 3,815,345 + -0.5 3,815,345 + +2.6 3,815,345 + +1.6 3,815,345 + -1.2 3,815,346 - +2.8 3,815,547 + Xcc-8004.3940.1 0.18 -0.8 3,815,617 + Xcc-8004.3940.1 0.21 +1.6 3,815,633 + Xcc-8004.3940.1 0.22 -2.0 3,815,633 + Xcc-8004.3940.1 0.22 +1.5 3,815,787 + Xcc-8004.3940.1 0.29 -0.6 3,815,945 + Xcc-8004.3940.1 0.36 -1.2 3,816,113 + Xcc-8004.3940.1 0.44 +1.4 3,816,113 + Xcc-8004.3940.1 0.44 +0.1 3,816,113 + Xcc-8004.3940.1 0.44 +0.0
Or see this region's nucleotide sequence