Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3823.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3822.1 and Xcc-8004.3823.1 are separated by 6 nucleotidesXcc-8004.3823.1 and Xcc-8004.3824.1 are separated by 237 nucleotides Xcc-8004.3822.1: Xcc-8004.3822.1 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 3,697,339 to 3,700,170 Xcc-8004.3822.1 Xcc-8004.3823.1: Xcc-8004.3823.1 - Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2), at 3,700,177 to 3,701,265 Xcc-8004.3823.1 Xcc-8004.3824.1: Xcc-8004.3824.1 - Proposed peptidoglycan lipid II flippase MurJ, at 3,701,503 to 3,703,110 Xcc-8004.3824.1 Position (kb) 3700 3701 3702Strain fitness (log2 ratio) -3 -2 -1 0 1at 3700.195 kb on - strandat 3700.270 kb on - strandat 3700.270 kb on - strandat 3700.270 kb on - strandat 3700.270 kb on - strandat 3700.270 kb on - strandat 3700.270 kb on - strandat 3700.270 kb on - strandat 3700.270 kb on - strandat 3701.327 kb on - strandat 3701.327 kb on - strandat 3701.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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3,700,195 - +0.5
3,700,270 - -3.1
3,700,270 - -2.4
3,700,270 - +0.1
3,700,270 - +0.6
3,700,270 - -0.6
3,700,270 - -1.0
3,700,270 - -0.8
3,700,270 - +1.4
3,701,327 - +1.0
3,701,327 - -0.2
3,701,329 - -1.5

Or see this region's nucleotide sequence