Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3634.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3632.1 and Xcc-8004.3633.1 are separated by 101 nucleotidesXcc-8004.3633.1 and Xcc-8004.3634.1 are separated by 11 nucleotidesXcc-8004.3634.1 and Xcc-8004.3635.1 overlap by 4 nucleotidesXcc-8004.3635.1 and Xcc-8004.3637.1 are separated by 113 nucleotides Xcc-8004.3632.1: Xcc-8004.3632.1 - FIG01209689: hypothetical protein, at 3,517,154 to 3,517,339 Xcc-8004.3632.1 Xcc-8004.3633.1: Xcc-8004.3633.1 - FIG01210834: hypothetical protein, at 3,517,441 to 3,518,325 Xcc-8004.3633.1 Xcc-8004.3634.1: Xcc-8004.3634.1 - FIG01111117: hypothetical protein, at 3,518,337 to 3,518,870 Xcc-8004.3634.1 Xcc-8004.3635.1: Xcc-8004.3635.1 - RNA polymerase ECF-type sigma factor, at 3,518,867 to 3,519,502 Xcc-8004.3635.1 Xcc-8004.3637.1: Xcc-8004.3637.1 - hypothetical protein, at 3,519,616 to 3,520,152 Xcc-8004.3637.1 Position (kb) 3518 3519Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3517.452 kb on - strandat 3517.541 kb on + strand, within Xcc-8004.3633.1at 3517.541 kb on + strand, within Xcc-8004.3633.1at 3517.542 kb on - strand, within Xcc-8004.3633.1at 3517.542 kb on - strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.718 kb on - strand, within Xcc-8004.3633.1at 3518.079 kb on - strand, within Xcc-8004.3633.1at 3518.079 kb on - strand, within Xcc-8004.3633.1at 3518.079 kb on - strand, within Xcc-8004.3633.1at 3518.188 kb on + strand, within Xcc-8004.3633.1at 3518.188 kb on + strand, within Xcc-8004.3633.1at 3518.188 kb on + strand, within Xcc-8004.3633.1at 3518.188 kb on + strand, within Xcc-8004.3633.1at 3518.189 kb on - strand, within Xcc-8004.3633.1at 3518.308 kb on + strandat 3518.309 kb on - strandat 3518.309 kb on - strandat 3518.309 kb on - strandat 3518.309 kb on - strandat 3518.350 kb on + strandat 3518.350 kb on + strandat 3518.350 kb on + strandat 3518.350 kb on + strandat 3518.350 kb on + strandat 3518.350 kb on + strandat 3518.351 kb on - strandat 3518.351 kb on - strandat 3518.351 kb on - strandat 3518.351 kb on - strandat 3518.398 kb on + strand, within Xcc-8004.3634.1at 3518.398 kb on + strand, within Xcc-8004.3634.1at 3518.398 kb on + strand, within Xcc-8004.3634.1at 3518.399 kb on - strand, within Xcc-8004.3634.1at 3518.399 kb on - strand, within Xcc-8004.3634.1at 3518.399 kb on - strand, within Xcc-8004.3634.1at 3518.399 kb on - strand, within Xcc-8004.3634.1at 3518.399 kb on - strand, within Xcc-8004.3634.1at 3518.551 kb on + strand, within Xcc-8004.3634.1at 3518.552 kb on - strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.631 kb on - strand, within Xcc-8004.3634.1at 3518.870 kb on + strandat 3518.870 kb on + strandat 3518.871 kb on - strandat 3518.871 kb on - strandat 3519.312 kb on + strand, within Xcc-8004.3635.1at 3519.312 kb on + strand, within Xcc-8004.3635.1at 3519.313 kb on - strand, within Xcc-8004.3635.1at 3519.313 kb on - strand, within Xcc-8004.3635.1at 3519.313 kb on - strand, within Xcc-8004.3635.1at 3519.313 kb on - strand, within Xcc-8004.3635.1at 3519.336 kb on + strand, within Xcc-8004.3635.1at 3519.336 kb on + strand, within Xcc-8004.3635.1at 3519.336 kb on + strand, within Xcc-8004.3635.1at 3519.337 kb on - strand, within Xcc-8004.3635.1at 3519.337 kb on - strand, within Xcc-8004.3635.1at 3519.349 kb on - strand, within Xcc-8004.3635.1at 3519.349 kb on - strand, within Xcc-8004.3635.1at 3519.445 kb on + strandat 3519.454 kb on + strandat 3519.454 kb on + strandat 3519.455 kb on - strandat 3519.489 kb on - strandat 3519.489 kb on - strandat 3519.497 kb on + strandat 3519.497 kb on + strandat 3519.497 kb on + strandat 3519.498 kb on - strandat 3519.505 kb on + strandat 3519.506 kb on - strandat 3519.506 kb on - strandat 3519.630 kb on + strandat 3519.630 kb on + strandat 3519.630 kb on + strandat 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.695 kb on + strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.696 kb on - strand, within Xcc-8004.3637.1at 3519.705 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.754 kb on + strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.755 kb on - strand, within Xcc-8004.3637.1at 3519.772 kb on + strand, within Xcc-8004.3637.1at 3519.773 kb on - strand, within Xcc-8004.3637.1at 3519.806 kb on + strand, within Xcc-8004.3637.1at 3519.806 kb on + strand, within Xcc-8004.3637.1at 3519.806 kb on + strand, within Xcc-8004.3637.1at 3519.807 kb on - strand, within Xcc-8004.3637.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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3,517,452 - +2.0
3,517,541 + Xcc-8004.3633.1 0.11 -0.3
3,517,541 + Xcc-8004.3633.1 0.11 -2.3
3,517,542 - Xcc-8004.3633.1 0.11 -1.5
3,517,542 - Xcc-8004.3633.1 0.11 -0.6
3,517,597 + Xcc-8004.3633.1 0.18 -0.5
3,517,597 + Xcc-8004.3633.1 0.18 +2.4
3,517,597 + Xcc-8004.3633.1 0.18 -2.1
3,517,597 + Xcc-8004.3633.1 0.18 +0.2
3,517,597 + Xcc-8004.3633.1 0.18 -0.7
3,517,598 - Xcc-8004.3633.1 0.18 -1.3
3,517,598 - Xcc-8004.3633.1 0.18 +0.2
3,517,598 - Xcc-8004.3633.1 0.18 -0.1
3,517,598 - Xcc-8004.3633.1 0.18 -1.9
3,517,598 - Xcc-8004.3633.1 0.18 -3.5
3,517,598 - Xcc-8004.3633.1 0.18 +0.1
3,517,598 - Xcc-8004.3633.1 0.18 +1.0
3,517,598 - Xcc-8004.3633.1 0.18 +0.1
3,517,598 - Xcc-8004.3633.1 0.18 -0.6
3,517,598 - Xcc-8004.3633.1 0.18 +0.4
3,517,717 + Xcc-8004.3633.1 0.31 -0.8
3,517,717 + Xcc-8004.3633.1 0.31 -2.6
3,517,717 + Xcc-8004.3633.1 0.31 -1.4
3,517,717 + Xcc-8004.3633.1 0.31 +1.0
3,517,718 - Xcc-8004.3633.1 0.31 -2.0
3,518,079 - Xcc-8004.3633.1 0.72 -0.9
3,518,079 - Xcc-8004.3633.1 0.72 +0.4
3,518,079 - Xcc-8004.3633.1 0.72 -1.9
3,518,188 + Xcc-8004.3633.1 0.84 -1.6
3,518,188 + Xcc-8004.3633.1 0.84 -1.2
3,518,188 + Xcc-8004.3633.1 0.84 -2.4
3,518,188 + Xcc-8004.3633.1 0.84 -0.1
3,518,189 - Xcc-8004.3633.1 0.85 -0.6
3,518,308 + -3.6
3,518,309 - +0.1
3,518,309 - -1.9
3,518,309 - -0.7
3,518,309 - +0.6
3,518,350 + -0.9
3,518,350 + -2.5
3,518,350 + -0.2
3,518,350 + -0.4
3,518,350 + -2.6
3,518,350 + -0.1
3,518,351 - -0.4
3,518,351 - -1.0
3,518,351 - -0.4
3,518,351 - -1.5
3,518,398 + Xcc-8004.3634.1 0.11 +3.5
3,518,398 + Xcc-8004.3634.1 0.11 -0.4
3,518,398 + Xcc-8004.3634.1 0.11 +1.5
3,518,399 - Xcc-8004.3634.1 0.12 +1.5
3,518,399 - Xcc-8004.3634.1 0.12 -1.9
3,518,399 - Xcc-8004.3634.1 0.12 -3.0
3,518,399 - Xcc-8004.3634.1 0.12 +0.6
3,518,399 - Xcc-8004.3634.1 0.12 -1.1
3,518,551 + Xcc-8004.3634.1 0.40 -2.3
3,518,552 - Xcc-8004.3634.1 0.40 +0.5
3,518,630 + Xcc-8004.3634.1 0.55 +3.1
3,518,630 + Xcc-8004.3634.1 0.55 +3.8
3,518,630 + Xcc-8004.3634.1 0.55 -2.7
3,518,630 + Xcc-8004.3634.1 0.55 -3.4
3,518,630 + Xcc-8004.3634.1 0.55 -1.6
3,518,630 + Xcc-8004.3634.1 0.55 +0.8
3,518,631 - Xcc-8004.3634.1 0.55 -1.2
3,518,870 + -0.5
3,518,870 + -0.1
3,518,871 - +1.2
3,518,871 - +0.5
3,519,312 + Xcc-8004.3635.1 0.70 +0.3
3,519,312 + Xcc-8004.3635.1 0.70 +0.5
3,519,313 - Xcc-8004.3635.1 0.70 +0.5
3,519,313 - Xcc-8004.3635.1 0.70 -2.0
3,519,313 - Xcc-8004.3635.1 0.70 +0.2
3,519,313 - Xcc-8004.3635.1 0.70 -1.7
3,519,336 + Xcc-8004.3635.1 0.74 +0.9
3,519,336 + Xcc-8004.3635.1 0.74 -3.7
3,519,336 + Xcc-8004.3635.1 0.74 +1.3
3,519,337 - Xcc-8004.3635.1 0.74 -0.8
3,519,337 - Xcc-8004.3635.1 0.74 -0.9
3,519,349 - Xcc-8004.3635.1 0.76 +4.2
3,519,349 - Xcc-8004.3635.1 0.76 -0.5
3,519,445 + -0.7
3,519,454 + +0.6
3,519,454 + +0.3
3,519,455 - -1.0
3,519,489 - +1.2
3,519,489 - +0.8
3,519,497 + +0.2
3,519,497 + -1.4
3,519,497 + -0.6
3,519,498 - -0.5
3,519,505 + -1.4
3,519,506 - +2.0
3,519,506 - -0.0
3,519,630 + -0.2
3,519,630 + +3.1
3,519,630 + +0.2
3,519,695 + Xcc-8004.3637.1 0.15 -0.9
3,519,695 + Xcc-8004.3637.1 0.15 -2.0
3,519,695 + Xcc-8004.3637.1 0.15 +5.4
3,519,695 + Xcc-8004.3637.1 0.15 -0.1
3,519,695 + Xcc-8004.3637.1 0.15 +1.3
3,519,696 - Xcc-8004.3637.1 0.15 +1.5
3,519,696 - Xcc-8004.3637.1 0.15 +1.9
3,519,696 - Xcc-8004.3637.1 0.15 -0.1
3,519,696 - Xcc-8004.3637.1 0.15 -1.9
3,519,696 - Xcc-8004.3637.1 0.15 +0.9
3,519,696 - Xcc-8004.3637.1 0.15 -0.5
3,519,696 - Xcc-8004.3637.1 0.15 +0.4
3,519,696 - Xcc-8004.3637.1 0.15 +0.2
3,519,696 - Xcc-8004.3637.1 0.15 -2.2
3,519,696 - Xcc-8004.3637.1 0.15 -2.8
3,519,705 + Xcc-8004.3637.1 0.17 +2.1
3,519,754 + Xcc-8004.3637.1 0.26 -0.1
3,519,754 + Xcc-8004.3637.1 0.26 +0.5
3,519,754 + Xcc-8004.3637.1 0.26 -2.3
3,519,754 + Xcc-8004.3637.1 0.26 -0.6
3,519,754 + Xcc-8004.3637.1 0.26 -1.2
3,519,754 + Xcc-8004.3637.1 0.26 +0.4
3,519,755 - Xcc-8004.3637.1 0.26 -0.0
3,519,755 - Xcc-8004.3637.1 0.26 +1.6
3,519,755 - Xcc-8004.3637.1 0.26 +0.1
3,519,755 - Xcc-8004.3637.1 0.26 +1.2
3,519,755 - Xcc-8004.3637.1 0.26 +0.8
3,519,755 - Xcc-8004.3637.1 0.26 -1.1
3,519,755 - Xcc-8004.3637.1 0.26 +0.9
3,519,755 - Xcc-8004.3637.1 0.26 +0.1
3,519,755 - Xcc-8004.3637.1 0.26 +2.2
3,519,755 - Xcc-8004.3637.1 0.26 +2.2
3,519,755 - Xcc-8004.3637.1 0.26 -2.2
3,519,772 + Xcc-8004.3637.1 0.29 +1.6
3,519,773 - Xcc-8004.3637.1 0.29 +0.6
3,519,806 + Xcc-8004.3637.1 0.35 +0.2
3,519,806 + Xcc-8004.3637.1 0.35 -0.4
3,519,806 + Xcc-8004.3637.1 0.35 -1.8
3,519,807 - Xcc-8004.3637.1 0.36 -1.5

Or see this region's nucleotide sequence