Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3632.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3631.1 and Xcc-8004.3632.1 are separated by 189 nucleotidesXcc-8004.3632.1 and Xcc-8004.3633.1 are separated by 101 nucleotidesXcc-8004.3633.1 and Xcc-8004.3634.1 are separated by 11 nucleotides Xcc-8004.3631.1: Xcc-8004.3631.1 - Putative heat shock protein YegD, at 3,515,582 to 3,516,964 Xcc-8004.3631.1 Xcc-8004.3632.1: Xcc-8004.3632.1 - FIG01209689: hypothetical protein, at 3,517,154 to 3,517,339 Xcc-8004.3632.1 Xcc-8004.3633.1: Xcc-8004.3633.1 - FIG01210834: hypothetical protein, at 3,517,441 to 3,518,325 Xcc-8004.3633.1 Xcc-8004.3634.1: Xcc-8004.3634.1 - FIG01111117: hypothetical protein, at 3,518,337 to 3,518,870 Xcc-8004.3634.1 Position (kb) 3517 3518Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3516.254 kb on + strand, within Xcc-8004.3631.1at 3516.254 kb on + strand, within Xcc-8004.3631.1at 3516.254 kb on + strand, within Xcc-8004.3631.1at 3516.255 kb on - strand, within Xcc-8004.3631.1at 3516.255 kb on - strand, within Xcc-8004.3631.1at 3516.299 kb on - strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.425 kb on + strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.426 kb on - strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.474 kb on - strand, within Xcc-8004.3631.1at 3516.474 kb on - strand, within Xcc-8004.3631.1at 3516.474 kb on - strand, within Xcc-8004.3631.1at 3516.474 kb on - strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.592 kb on + strand, within Xcc-8004.3631.1at 3516.731 kb on - strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.735 kb on - strand, within Xcc-8004.3631.1at 3516.833 kb on + strandat 3516.833 kb on + strandat 3516.834 kb on - strandat 3516.834 kb on - strandat 3516.834 kb on - strandat 3516.835 kb on + strandat 3516.963 kb on - strandat 3516.973 kb on + strandat 3516.973 kb on + strandat 3516.974 kb on - strandat 3516.974 kb on - strandat 3516.974 kb on - strandat 3516.987 kb on + strandat 3516.988 kb on - strandat 3516.988 kb on - strandat 3517.104 kb on + strandat 3517.109 kb on + strandat 3517.142 kb on - strandat 3517.210 kb on + strand, within Xcc-8004.3632.1at 3517.210 kb on + strand, within Xcc-8004.3632.1at 3517.210 kb on + strand, within Xcc-8004.3632.1at 3517.211 kb on - strand, within Xcc-8004.3632.1at 3517.211 kb on - strand, within Xcc-8004.3632.1at 3517.211 kb on - strand, within Xcc-8004.3632.1at 3517.238 kb on - strand, within Xcc-8004.3632.1at 3517.452 kb on - strandat 3517.541 kb on + strand, within Xcc-8004.3633.1at 3517.541 kb on + strand, within Xcc-8004.3633.1at 3517.542 kb on - strand, within Xcc-8004.3633.1at 3517.542 kb on - strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.718 kb on - strand, within Xcc-8004.3633.1at 3518.079 kb on - strand, within Xcc-8004.3633.1at 3518.079 kb on - strand, within Xcc-8004.3633.1at 3518.079 kb on - strand, within Xcc-8004.3633.1at 3518.188 kb on + strand, within Xcc-8004.3633.1at 3518.188 kb on + strand, within Xcc-8004.3633.1at 3518.188 kb on + strand, within Xcc-8004.3633.1at 3518.188 kb on + strand, within Xcc-8004.3633.1at 3518.189 kb on - strand, within Xcc-8004.3633.1at 3518.308 kb on + strandat 3518.309 kb on - strandat 3518.309 kb on - strandat 3518.309 kb on - strandat 3518.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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3,516,254 + Xcc-8004.3631.1 0.49 +0.5
3,516,254 + Xcc-8004.3631.1 0.49 +0.8
3,516,254 + Xcc-8004.3631.1 0.49 -0.9
3,516,255 - Xcc-8004.3631.1 0.49 +0.0
3,516,255 - Xcc-8004.3631.1 0.49 -0.9
3,516,299 - Xcc-8004.3631.1 0.52 +3.2
3,516,425 + Xcc-8004.3631.1 0.61 -1.8
3,516,425 + Xcc-8004.3631.1 0.61 +1.8
3,516,425 + Xcc-8004.3631.1 0.61 +0.0
3,516,425 + Xcc-8004.3631.1 0.61 +0.6
3,516,425 + Xcc-8004.3631.1 0.61 -3.0
3,516,425 + Xcc-8004.3631.1 0.61 +0.9
3,516,426 - Xcc-8004.3631.1 0.61 -1.0
3,516,426 - Xcc-8004.3631.1 0.61 -1.0
3,516,426 - Xcc-8004.3631.1 0.61 -0.4
3,516,426 - Xcc-8004.3631.1 0.61 +0.3
3,516,426 - Xcc-8004.3631.1 0.61 +1.4
3,516,426 - Xcc-8004.3631.1 0.61 +1.0
3,516,426 - Xcc-8004.3631.1 0.61 +1.0
3,516,426 - Xcc-8004.3631.1 0.61 +2.0
3,516,473 + Xcc-8004.3631.1 0.64 -1.6
3,516,473 + Xcc-8004.3631.1 0.64 +3.2
3,516,473 + Xcc-8004.3631.1 0.64 -2.6
3,516,473 + Xcc-8004.3631.1 0.64 -0.7
3,516,473 + Xcc-8004.3631.1 0.64 +1.4
3,516,474 - Xcc-8004.3631.1 0.64 -1.4
3,516,474 - Xcc-8004.3631.1 0.64 -1.3
3,516,474 - Xcc-8004.3631.1 0.64 -0.5
3,516,474 - Xcc-8004.3631.1 0.64 -0.1
3,516,533 + Xcc-8004.3631.1 0.69 +1.2
3,516,533 + Xcc-8004.3631.1 0.69 -0.5
3,516,533 + Xcc-8004.3631.1 0.69 -0.3
3,516,533 + Xcc-8004.3631.1 0.69 +0.2
3,516,533 + Xcc-8004.3631.1 0.69 +0.7
3,516,533 + Xcc-8004.3631.1 0.69 +1.0
3,516,534 - Xcc-8004.3631.1 0.69 +2.1
3,516,534 - Xcc-8004.3631.1 0.69 -0.5
3,516,534 - Xcc-8004.3631.1 0.69 -0.0
3,516,534 - Xcc-8004.3631.1 0.69 -0.6
3,516,534 - Xcc-8004.3631.1 0.69 +0.9
3,516,534 - Xcc-8004.3631.1 0.69 -1.7
3,516,592 + Xcc-8004.3631.1 0.73 -0.3
3,516,731 - Xcc-8004.3631.1 0.83 +0.3
3,516,734 + Xcc-8004.3631.1 0.83 -1.2
3,516,734 + Xcc-8004.3631.1 0.83 +1.9
3,516,734 + Xcc-8004.3631.1 0.83 -1.1
3,516,734 + Xcc-8004.3631.1 0.83 +2.8
3,516,734 + Xcc-8004.3631.1 0.83 +0.3
3,516,735 - Xcc-8004.3631.1 0.83 +2.2
3,516,833 + -1.1
3,516,833 + +2.8
3,516,834 - +0.8
3,516,834 - +0.1
3,516,834 - +0.2
3,516,835 + -0.4
3,516,963 - +4.1
3,516,973 + +0.9
3,516,973 + -0.3
3,516,974 - -1.2
3,516,974 - -2.3
3,516,974 - -2.9
3,516,987 + +0.8
3,516,988 - +1.5
3,516,988 - +1.8
3,517,104 + +0.4
3,517,109 + +2.1
3,517,142 - -2.2
3,517,210 + Xcc-8004.3632.1 0.30 +0.1
3,517,210 + Xcc-8004.3632.1 0.30 +1.6
3,517,210 + Xcc-8004.3632.1 0.30 -1.4
3,517,211 - Xcc-8004.3632.1 0.31 -0.7
3,517,211 - Xcc-8004.3632.1 0.31 -0.5
3,517,211 - Xcc-8004.3632.1 0.31 -2.0
3,517,238 - Xcc-8004.3632.1 0.45 -1.6
3,517,452 - +2.0
3,517,541 + Xcc-8004.3633.1 0.11 -0.3
3,517,541 + Xcc-8004.3633.1 0.11 -2.3
3,517,542 - Xcc-8004.3633.1 0.11 -1.5
3,517,542 - Xcc-8004.3633.1 0.11 -0.6
3,517,597 + Xcc-8004.3633.1 0.18 -0.5
3,517,597 + Xcc-8004.3633.1 0.18 +2.4
3,517,597 + Xcc-8004.3633.1 0.18 -2.1
3,517,597 + Xcc-8004.3633.1 0.18 +0.2
3,517,597 + Xcc-8004.3633.1 0.18 -0.7
3,517,598 - Xcc-8004.3633.1 0.18 -1.3
3,517,598 - Xcc-8004.3633.1 0.18 +0.2
3,517,598 - Xcc-8004.3633.1 0.18 -0.1
3,517,598 - Xcc-8004.3633.1 0.18 -1.9
3,517,598 - Xcc-8004.3633.1 0.18 -3.5
3,517,598 - Xcc-8004.3633.1 0.18 +0.1
3,517,598 - Xcc-8004.3633.1 0.18 +1.0
3,517,598 - Xcc-8004.3633.1 0.18 +0.1
3,517,598 - Xcc-8004.3633.1 0.18 -0.6
3,517,598 - Xcc-8004.3633.1 0.18 +0.4
3,517,717 + Xcc-8004.3633.1 0.31 -0.8
3,517,717 + Xcc-8004.3633.1 0.31 -2.6
3,517,717 + Xcc-8004.3633.1 0.31 -1.4
3,517,717 + Xcc-8004.3633.1 0.31 +1.0
3,517,718 - Xcc-8004.3633.1 0.31 -2.0
3,518,079 - Xcc-8004.3633.1 0.72 -0.9
3,518,079 - Xcc-8004.3633.1 0.72 +0.4
3,518,079 - Xcc-8004.3633.1 0.72 -1.9
3,518,188 + Xcc-8004.3633.1 0.84 -1.6
3,518,188 + Xcc-8004.3633.1 0.84 -1.2
3,518,188 + Xcc-8004.3633.1 0.84 -2.4
3,518,188 + Xcc-8004.3633.1 0.84 -0.1
3,518,189 - Xcc-8004.3633.1 0.85 -0.6
3,518,308 + -3.6
3,518,309 - +0.1
3,518,309 - -1.9
3,518,309 - -0.7
3,518,309 - +0.6

Or see this region's nucleotide sequence