Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3179.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 6 dpi (25 plantes)
3,096,451	+				-1.8
3,096,451	+				+0.3
3,096,451	+				+0.4
3,096,508	+				+0.3
3,096,508	+				-0.3
3,096,508	+				-0.0
3,096,675	-				-1.8
3,097,041	+		Xcc-8004.3178.1	0.54	-1.8
3,097,139	+		Xcc-8004.3178.1	0.67	+2.1
3,097,140	-		Xcc-8004.3178.1	0.67	-1.0
3,097,140	-		Xcc-8004.3178.1	0.67	+0.9
3,097,140	-		Xcc-8004.3178.1	0.67	-3.2
3,097,205	+		Xcc-8004.3178.1	0.75	-0.9
3,097,309	-		Xcc-8004.3178.1	0.88	+0.1
3,097,309	-		Xcc-8004.3178.1	0.88	-1.5
3,097,321	+		Xcc-8004.3178.1	0.90	+1.0
3,097,322	-		Xcc-8004.3178.1	0.90	+0.9
3,097,322	-		Xcc-8004.3178.1	0.90	+1.2
3,097,322	-		Xcc-8004.3178.1	0.90	+0.5
3,097,634	-		Xcc-8004.3179.1	0.17	-1.0
3,097,796	-		Xcc-8004.3179.1	0.28	+2.4
3,097,962	+		Xcc-8004.3179.1	0.40	+2.7
3,097,962	+		Xcc-8004.3179.1	0.40	-0.3
3,098,005	-		Xcc-8004.3179.1	0.43	+0.0
3,098,104	+		Xcc-8004.3179.1	0.50	-1.5
3,098,120	-		Xcc-8004.3179.1	0.51	-1.1
3,098,137	+		Xcc-8004.3179.1	0.52	-1.1
3,098,137	+		Xcc-8004.3179.1	0.52	-1.2
3,098,137	+		Xcc-8004.3179.1	0.52	-2.1
3,098,138	-		Xcc-8004.3179.1	0.53	-1.8
3,098,138	-		Xcc-8004.3179.1	0.53	-1.0
3,098,138	-		Xcc-8004.3179.1	0.53	-1.2
3,098,138	-		Xcc-8004.3179.1	0.53	-0.4
3,098,218	+		Xcc-8004.3179.1	0.58	+1.2
3,098,218	+		Xcc-8004.3179.1	0.58	-0.3
3,098,218	+		Xcc-8004.3179.1	0.58	-0.1
3,098,219	-		Xcc-8004.3179.1	0.58	-0.9
3,098,219	-		Xcc-8004.3179.1	0.58	-1.7
3,098,219	-		Xcc-8004.3179.1	0.58	-1.2
3,098,234	-		Xcc-8004.3179.1	0.59	-0.6
3,098,234	-		Xcc-8004.3179.1	0.59	-2.9
3,098,234	-		Xcc-8004.3179.1	0.59	-0.1
3,098,341	+		Xcc-8004.3179.1	0.67	-0.4
3,098,353	+		Xcc-8004.3179.1	0.68	-1.4
3,098,395	+		Xcc-8004.3179.1	0.71	+1.6
3,098,395	+		Xcc-8004.3179.1	0.71	+0.1
3,098,395	+		Xcc-8004.3179.1	0.71	-2.2
3,098,396	-		Xcc-8004.3179.1	0.71	+1.5
3,098,396	-		Xcc-8004.3179.1	0.71	-0.5
3,098,407	+		Xcc-8004.3179.1	0.72	-0.1
3,098,407	+		Xcc-8004.3179.1	0.72	-0.6
3,098,408	-		Xcc-8004.3179.1	0.72	-0.8
3,098,408	-		Xcc-8004.3179.1	0.72	-1.4
3,098,408	-		Xcc-8004.3179.1	0.72	-0.7
3,098,408	-		Xcc-8004.3179.1	0.72	+3.2
3,098,423	-		Xcc-8004.3179.1	0.73	-0.2
3,098,506	+		Xcc-8004.3179.1	0.79	-1.1
3,098,507	-		Xcc-8004.3179.1	0.79	-0.6
3,098,524	+		Xcc-8004.3179.1	0.80	-1.7
3,098,524	+		Xcc-8004.3179.1	0.80	-1.7
3,098,524	+		Xcc-8004.3179.1	0.80	-1.4
3,098,524	+		Xcc-8004.3179.1	0.80	+1.5
3,098,524	+		Xcc-8004.3179.1	0.80	+1.3
3,098,524	+		Xcc-8004.3179.1	0.80	+1.3
3,098,525	-		Xcc-8004.3179.1	0.80	+1.5
3,098,626	+		Xcc-8004.3179.1	0.87	+0.6
3,098,626	+		Xcc-8004.3179.1	0.87	+3.7
3,098,626	+		Xcc-8004.3179.1	0.87	+0.4
3,098,627	-		Xcc-8004.3179.1	0.87	+0.8
3,098,627	-		Xcc-8004.3179.1	0.87	+0.0
3,098,627	-		Xcc-8004.3179.1	0.87	-1.9
3,098,656	+		Xcc-8004.3179.1	0.89	+0.6
3,098,656	+		Xcc-8004.3179.1	0.89	+1.0
3,098,656	+		Xcc-8004.3179.1	0.89	-2.3
3,098,656	+		Xcc-8004.3179.1	0.89	-1.1
3,098,656	+		Xcc-8004.3179.1	0.89	+0.7
3,098,656	+		Xcc-8004.3179.1	0.89	+0.0
3,098,656	+		Xcc-8004.3179.1	0.89	-0.0
3,098,656	+		Xcc-8004.3179.1	0.89	+0.1
3,098,657	-		Xcc-8004.3179.1	0.89	+1.7
3,098,657	-		Xcc-8004.3179.1	0.89	-0.8
3,098,657	-		Xcc-8004.3179.1	0.89	-1.2
3,098,657	-		Xcc-8004.3179.1	0.89	-1.5
3,098,657	-		Xcc-8004.3179.1	0.89	+0.4
3,098,657	-		Xcc-8004.3179.1	0.89	+2.3
3,098,657	-		Xcc-8004.3179.1	0.89	+0.9
3,098,682	-				+0.2
3,098,822	+				-0.5
3,098,823	-				+1.0
3,098,888	+		Xcc-8004.3180.1	0.12	-0.5
3,098,889	-		Xcc-8004.3180.1	0.13	+0.6
3,099,055	+		Xcc-8004.3180.1	0.55	-1.3
3,099,056	-		Xcc-8004.3180.1	0.55	-0.1
3,099,056	-		Xcc-8004.3180.1	0.55	+0.8
3,099,056	-		Xcc-8004.3180.1	0.55	-0.2
3,099,064	+		Xcc-8004.3180.1	0.57	+0.3
3,099,064	+		Xcc-8004.3180.1	0.57	-0.5
3,099,064	+		Xcc-8004.3180.1	0.57	+3.8
3,099,121	+		Xcc-8004.3180.1	0.71	-0.1
3,099,121	+		Xcc-8004.3180.1	0.71	-1.0
3,099,121	+		Xcc-8004.3180.1	0.71	-1.2
3,099,121	+		Xcc-8004.3180.1	0.71	-1.0
3,099,122	-		Xcc-8004.3180.1	0.71	-0.4
3,099,169	+		Xcc-8004.3180.1	0.83	-0.7
3,099,169	+		Xcc-8004.3180.1	0.83	+0.5
3,099,169	+		Xcc-8004.3180.1	0.83	-1.6
3,099,169	+		Xcc-8004.3180.1	0.83	-0.4
3,099,170	-		Xcc-8004.3180.1	0.84	-0.7
3,099,170	-		Xcc-8004.3180.1	0.84	-0.9
3,099,170	-		Xcc-8004.3180.1	0.84	-1.5
3,099,170	-		Xcc-8004.3180.1	0.84	-2.2
3,099,214	+				+1.6
3,099,257	-				+3.3
3,099,257	-				-2.3
3,099,327	+				-0.8
3,099,327	+				-0.9
3,099,329	+				+3.2
3,099,382	-				-1.0
3,099,400	+				-0.1
3,099,408	+				+5.2
3,099,408	+				+1.1
3,099,408	+				+1.0
3,099,408	+				+0.7
3,099,408	+				-0.1
3,099,408	+				+2.4
3,099,408	+				-1.2
3,099,409	-				-0.6
3,099,409	-				+1.2
3,099,409	-				-0.8
3,099,409	-				-1.6
3,099,409	-				-1.0
3,099,409	-				-0.5
3,099,409	-				+1.8
3,099,409	-				+0.7
3,099,409	-				+2.6
3,099,455	+				-0.2
3,099,455	+				+0.4
3,099,455	+				+1.9
3,099,455	+				+1.4
3,099,455	+				+1.3
3,099,456	-				+0.2
3,099,456	-				+2.3
3,099,456	-				+1.3
3,099,456	-				+0.6
3,099,456	-				-0.5
3,099,456	-				+0.3
3,099,485	+				-2.0
3,099,485	+				-1.4
3,099,485	+				-1.0
3,099,486	-				+1.5
3,099,486	-				+0.6
3,099,486	-				-1.0
3,099,486	-				-0.9
3,099,486	-				-1.3
3,099,486	-				+1.0
3,099,486	-				-2.7
3,099,575	+		Xcc-8004.3182.1	0.11	+2.2
3,099,575	+		Xcc-8004.3182.1	0.11	-1.3
3,099,575	+		Xcc-8004.3182.1	0.11	+0.6
3,099,576	-		Xcc-8004.3182.1	0.11	-0.3
3,099,576	-		Xcc-8004.3182.1	0.11	+6.6
3,099,609	+		Xcc-8004.3182.1	0.15	+3.4
3,099,609	+		Xcc-8004.3182.1	0.15	+1.1
3,099,610	-		Xcc-8004.3182.1	0.15	+1.5
3,099,610	-		Xcc-8004.3182.1	0.15	-0.7