Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2346.1 and Xcc-8004.2347.1 overlap by 4 nucleotides Xcc-8004.2347.1 and Xcc-8004.2348.1 are separated by 197 nucleotides Xcc-8004.2348.1 and Xcc-8004.2349.1 are separated by 147 nucleotides
Xcc-8004.2346.1: Xcc-8004.2346.1 - ABC transporter involved in cytochrome c biogenesis, CcmB subunit, at 2,292,776 to 2,293,471
Xcc-8004.2346.1
Xcc-8004.2347.1: Xcc-8004.2347.1 - ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA, at 2,293,468 to 2,294,112
Xcc-8004.2347.1
Xcc-8004.2348.1: Xcc-8004.2348.1 - hypothetical protein, at 2,294,310 to 2,295,458
Xcc-8004.2348.1
Xcc-8004.2349.1: Xcc-8004.2349.1 - Aliphatic amidase AmiE (EC 3.5.1.4), at 2,295,606 to 2,296,406
Xcc-8004.2349.1
Position (kb)
2294
2295
2296 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 2293.521 kb on - strand at 2293.521 kb on - strand at 2293.620 kb on - strand, within Xcc-8004.2347.1 at 2294.173 kb on - strand at 2294.173 kb on - strand at 2294.185 kb on + strand at 2294.271 kb on + strand at 2294.272 kb on - strand at 2294.272 kb on - strand at 2294.481 kb on + strand, within Xcc-8004.2348.1 at 2294.544 kb on + strand, within Xcc-8004.2348.1 at 2294.544 kb on + strand, within Xcc-8004.2348.1 at 2294.544 kb on + strand, within Xcc-8004.2348.1 at 2294.545 kb on - strand, within Xcc-8004.2348.1 at 2294.667 kb on + strand, within Xcc-8004.2348.1 at 2294.676 kb on + strand, within Xcc-8004.2348.1 at 2294.676 kb on + strand, within Xcc-8004.2348.1 at 2294.907 kb on + strand, within Xcc-8004.2348.1 at 2294.907 kb on + strand, within Xcc-8004.2348.1 at 2294.908 kb on - strand, within Xcc-8004.2348.1 at 2294.908 kb on - strand, within Xcc-8004.2348.1 at 2294.908 kb on - strand, within Xcc-8004.2348.1 at 2295.006 kb on + strand, within Xcc-8004.2348.1 at 2295.006 kb on + strand, within Xcc-8004.2348.1 at 2295.006 kb on + strand, within Xcc-8004.2348.1 at 2295.006 kb on + strand, within Xcc-8004.2348.1 at 2295.007 kb on - strand, within Xcc-8004.2348.1 at 2295.007 kb on - strand, within Xcc-8004.2348.1 at 2295.007 kb on - strand, within Xcc-8004.2348.1 at 2295.007 kb on - strand, within Xcc-8004.2348.1 at 2295.007 kb on - strand, within Xcc-8004.2348.1 at 2295.007 kb on - strand, within Xcc-8004.2348.1 at 2295.007 kb on - strand, within Xcc-8004.2348.1 at 2295.034 kb on - strand, within Xcc-8004.2348.1 at 2295.084 kb on + strand, within Xcc-8004.2348.1 at 2295.084 kb on + strand, within Xcc-8004.2348.1 at 2295.084 kb on + strand, within Xcc-8004.2348.1 at 2295.084 kb on + strand, within Xcc-8004.2348.1 at 2295.085 kb on - strand, within Xcc-8004.2348.1 at 2295.085 kb on - strand, within Xcc-8004.2348.1 at 2295.085 kb on - strand, within Xcc-8004.2348.1 at 2295.085 kb on - strand, within Xcc-8004.2348.1 at 2295.085 kb on - strand, within Xcc-8004.2348.1 at 2295.085 kb on - strand, within Xcc-8004.2348.1 at 2295.085 kb on - strand, within Xcc-8004.2348.1 at 2295.177 kb on + strand, within Xcc-8004.2348.1 at 2295.177 kb on + strand, within Xcc-8004.2348.1 at 2295.177 kb on + strand, within Xcc-8004.2348.1 at 2295.177 kb on + strand, within Xcc-8004.2348.1 at 2295.177 kb on + strand, within Xcc-8004.2348.1 at 2295.178 kb on - strand, within Xcc-8004.2348.1 at 2295.178 kb on - strand, within Xcc-8004.2348.1 at 2295.178 kb on - strand, within Xcc-8004.2348.1 at 2295.178 kb on - strand, within Xcc-8004.2348.1 at 2295.178 kb on - strand, within Xcc-8004.2348.1 at 2295.178 kb on - strand, within Xcc-8004.2348.1 at 2295.178 kb on - strand, within Xcc-8004.2348.1 at 2295.178 kb on - strand, within Xcc-8004.2348.1 at 2295.252 kb on + strand, within Xcc-8004.2348.1 at 2295.252 kb on + strand, within Xcc-8004.2348.1 at 2295.252 kb on + strand, within Xcc-8004.2348.1 at 2295.253 kb on - strand, within Xcc-8004.2348.1 at 2295.253 kb on - strand, within Xcc-8004.2348.1 at 2295.270 kb on + strand, within Xcc-8004.2348.1 at 2295.271 kb on - strand, within Xcc-8004.2348.1 at 2295.271 kb on - strand, within Xcc-8004.2348.1 at 2295.360 kb on + strand at 2295.360 kb on + strand at 2295.360 kb on + strand at 2295.361 kb on - strand at 2295.446 kb on - strand at 2295.503 kb on + strand at 2295.503 kb on + strand at 2295.503 kb on + strand at 2295.503 kb on + strand at 2295.504 kb on - strand at 2295.504 kb on - strand at 2295.624 kb on + strand at 2295.675 kb on + strand at 2295.676 kb on - strand at 2295.676 kb on - strand at 2295.676 kb on - strand at 2295.676 kb on - strand at 2295.678 kb on + strand at 2295.678 kb on + strand at 2295.678 kb on + strand at 2295.679 kb on - strand at 2295.679 kb on - strand at 2295.679 kb on - strand at 2295.921 kb on + strand, within Xcc-8004.2349.1 at 2295.922 kb on - strand, within Xcc-8004.2349.1 at 2295.922 kb on - strand, within Xcc-8004.2349.1 at 2295.922 kb on - strand, within Xcc-8004.2349.1 at 2295.922 kb on - strand, within Xcc-8004.2349.1 at 2295.922 kb on - strand, within Xcc-8004.2349.1 at 2295.924 kb on + strand, within Xcc-8004.2349.1 at 2295.924 kb on + strand, within Xcc-8004.2349.1 at 2295.924 kb on + strand, within Xcc-8004.2349.1 at 2295.925 kb on - strand, within Xcc-8004.2349.1 at 2295.970 kb on - strand, within Xcc-8004.2349.1 at 2295.970 kb on - strand, within Xcc-8004.2349.1 at 2296.035 kb on + strand, within Xcc-8004.2349.1 at 2296.035 kb on + strand, within Xcc-8004.2349.1 at 2296.035 kb on + strand, within Xcc-8004.2349.1 at 2296.036 kb on - strand, within Xcc-8004.2349.1 at 2296.078 kb on + strand, within Xcc-8004.2349.1 at 2296.078 kb on + strand, within Xcc-8004.2349.1 at 2296.079 kb on - strand, within Xcc-8004.2349.1 at 2296.079 kb on - strand, within Xcc-8004.2349.1 at 2296.146 kb on + strand, within Xcc-8004.2349.1 at 2296.242 kb on + strand, within Xcc-8004.2349.1 at 2296.243 kb on - strand, within Xcc-8004.2349.1 at 2296.404 kb on + strand at 2296.404 kb on + strand at 2296.404 kb on + strand at 2296.404 kb on + strand at 2296.404 kb on + strand at 2296.405 kb on - strand at 2296.405 kb on - strand at 2296.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 2,293,521 - +0.6 2,293,521 - -0.0 2,293,620 - Xcc-8004.2347.1 0.24 -1.2 2,294,173 - -0.2 2,294,173 - -2.1 2,294,185 + -0.3 2,294,271 + +0.3 2,294,272 - -1.0 2,294,272 - +1.1 2,294,481 + Xcc-8004.2348.1 0.15 +3.3 2,294,544 + Xcc-8004.2348.1 0.20 -0.7 2,294,544 + Xcc-8004.2348.1 0.20 +1.3 2,294,544 + Xcc-8004.2348.1 0.20 -0.9 2,294,545 - Xcc-8004.2348.1 0.20 -3.1 2,294,667 + Xcc-8004.2348.1 0.31 -0.2 2,294,676 + Xcc-8004.2348.1 0.32 +0.2 2,294,676 + Xcc-8004.2348.1 0.32 -1.6 2,294,907 + Xcc-8004.2348.1 0.52 -0.6 2,294,907 + Xcc-8004.2348.1 0.52 -2.9 2,294,908 - Xcc-8004.2348.1 0.52 -2.7 2,294,908 - Xcc-8004.2348.1 0.52 -1.4 2,294,908 - Xcc-8004.2348.1 0.52 -1.2 2,295,006 + Xcc-8004.2348.1 0.61 -1.2 2,295,006 + Xcc-8004.2348.1 0.61 -2.8 2,295,006 + Xcc-8004.2348.1 0.61 -1.6 2,295,006 + Xcc-8004.2348.1 0.61 +1.3 2,295,007 - Xcc-8004.2348.1 0.61 -1.1 2,295,007 - Xcc-8004.2348.1 0.61 -0.6 2,295,007 - Xcc-8004.2348.1 0.61 -0.0 2,295,007 - Xcc-8004.2348.1 0.61 +1.4 2,295,007 - Xcc-8004.2348.1 0.61 -2.3 2,295,007 - Xcc-8004.2348.1 0.61 -0.9 2,295,007 - Xcc-8004.2348.1 0.61 -0.1 2,295,034 - Xcc-8004.2348.1 0.63 -2.3 2,295,084 + Xcc-8004.2348.1 0.67 -1.2 2,295,084 + Xcc-8004.2348.1 0.67 +0.7 2,295,084 + Xcc-8004.2348.1 0.67 +1.5 2,295,084 + Xcc-8004.2348.1 0.67 +2.4 2,295,085 - Xcc-8004.2348.1 0.67 -1.4 2,295,085 - Xcc-8004.2348.1 0.67 +2.3 2,295,085 - Xcc-8004.2348.1 0.67 -1.2 2,295,085 - Xcc-8004.2348.1 0.67 +2.1 2,295,085 - Xcc-8004.2348.1 0.67 +0.8 2,295,085 - Xcc-8004.2348.1 0.67 +1.7 2,295,085 - Xcc-8004.2348.1 0.67 -0.4 2,295,177 + Xcc-8004.2348.1 0.75 -0.3 2,295,177 + Xcc-8004.2348.1 0.75 +0.8 2,295,177 + Xcc-8004.2348.1 0.75 +0.7 2,295,177 + Xcc-8004.2348.1 0.75 -2.2 2,295,177 + Xcc-8004.2348.1 0.75 -0.8 2,295,178 - Xcc-8004.2348.1 0.76 +0.0 2,295,178 - Xcc-8004.2348.1 0.76 -2.0 2,295,178 - Xcc-8004.2348.1 0.76 -1.8 2,295,178 - Xcc-8004.2348.1 0.76 -2.4 2,295,178 - Xcc-8004.2348.1 0.76 -1.0 2,295,178 - Xcc-8004.2348.1 0.76 -1.6 2,295,178 - Xcc-8004.2348.1 0.76 +1.3 2,295,178 - Xcc-8004.2348.1 0.76 -0.9 2,295,252 + Xcc-8004.2348.1 0.82 +0.5 2,295,252 + Xcc-8004.2348.1 0.82 +1.1 2,295,252 + Xcc-8004.2348.1 0.82 +0.9 2,295,253 - Xcc-8004.2348.1 0.82 +1.5 2,295,253 - Xcc-8004.2348.1 0.82 -0.4 2,295,270 + Xcc-8004.2348.1 0.84 -1.7 2,295,271 - Xcc-8004.2348.1 0.84 -1.6 2,295,271 - Xcc-8004.2348.1 0.84 +2.3 2,295,360 + -0.2 2,295,360 + +0.2 2,295,360 + -0.1 2,295,361 - +2.3 2,295,446 - -1.4 2,295,503 + -0.4 2,295,503 + -2.1 2,295,503 + -1.8 2,295,503 + -0.9 2,295,504 - +1.4 2,295,504 - -0.4 2,295,624 + -1.3 2,295,675 + -2.1 2,295,676 - -0.8 2,295,676 - -0.3 2,295,676 - -2.7 2,295,676 - -1.5 2,295,678 + -1.2 2,295,678 + -2.0 2,295,678 + -0.5 2,295,679 - -1.1 2,295,679 - -5.3 2,295,679 - -1.2 2,295,921 + Xcc-8004.2349.1 0.39 +0.2 2,295,922 - Xcc-8004.2349.1 0.39 -0.7 2,295,922 - Xcc-8004.2349.1 0.39 +1.7 2,295,922 - Xcc-8004.2349.1 0.39 -1.8 2,295,922 - Xcc-8004.2349.1 0.39 -0.9 2,295,922 - Xcc-8004.2349.1 0.39 +1.5 2,295,924 + Xcc-8004.2349.1 0.40 -0.6 2,295,924 + Xcc-8004.2349.1 0.40 -1.6 2,295,924 + Xcc-8004.2349.1 0.40 +1.3 2,295,925 - Xcc-8004.2349.1 0.40 -0.9 2,295,970 - Xcc-8004.2349.1 0.45 -0.2 2,295,970 - Xcc-8004.2349.1 0.45 -2.4 2,296,035 + Xcc-8004.2349.1 0.54 -0.1 2,296,035 + Xcc-8004.2349.1 0.54 +0.2 2,296,035 + Xcc-8004.2349.1 0.54 +0.3 2,296,036 - Xcc-8004.2349.1 0.54 -0.7 2,296,078 + Xcc-8004.2349.1 0.59 -0.8 2,296,078 + Xcc-8004.2349.1 0.59 -1.2 2,296,079 - Xcc-8004.2349.1 0.59 +2.3 2,296,079 - Xcc-8004.2349.1 0.59 -0.3 2,296,146 + Xcc-8004.2349.1 0.67 -2.3 2,296,242 + Xcc-8004.2349.1 0.79 +0.2 2,296,243 - Xcc-8004.2349.1 0.80 +0.1 2,296,404 + +2.8 2,296,404 + +0.4 2,296,404 + +0.7 2,296,404 + -1.3 2,296,404 + +0.3 2,296,405 - -0.3 2,296,405 - +1.1 2,296,405 - +0.9
Or see this region's nucleotide sequence