Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2348.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2346.1 and Xcc-8004.2347.1 overlap by 4 nucleotidesXcc-8004.2347.1 and Xcc-8004.2348.1 are separated by 197 nucleotidesXcc-8004.2348.1 and Xcc-8004.2349.1 are separated by 147 nucleotides Xcc-8004.2346.1: Xcc-8004.2346.1 - ABC transporter involved in cytochrome c biogenesis, CcmB subunit, at 2,292,776 to 2,293,471 Xcc-8004.2346.1 Xcc-8004.2347.1: Xcc-8004.2347.1 - ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA, at 2,293,468 to 2,294,112 Xcc-8004.2347.1 Xcc-8004.2348.1: Xcc-8004.2348.1 - hypothetical protein, at 2,294,310 to 2,295,458 Xcc-8004.2348.1 Xcc-8004.2349.1: Xcc-8004.2349.1 - Aliphatic amidase AmiE (EC 3.5.1.4), at 2,295,606 to 2,296,406 Xcc-8004.2349.1 Position (kb) 2294 2295 2296Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2293.521 kb on - strandat 2293.521 kb on - strandat 2293.620 kb on - strand, within Xcc-8004.2347.1at 2294.173 kb on - strandat 2294.173 kb on - strandat 2294.185 kb on + strandat 2294.271 kb on + strandat 2294.272 kb on - strandat 2294.272 kb on - strandat 2294.481 kb on + strand, within Xcc-8004.2348.1at 2294.544 kb on + strand, within Xcc-8004.2348.1at 2294.544 kb on + strand, within Xcc-8004.2348.1at 2294.544 kb on + strand, within Xcc-8004.2348.1at 2294.545 kb on - strand, within Xcc-8004.2348.1at 2294.667 kb on + strand, within Xcc-8004.2348.1at 2294.676 kb on + strand, within Xcc-8004.2348.1at 2294.676 kb on + strand, within Xcc-8004.2348.1at 2294.907 kb on + strand, within Xcc-8004.2348.1at 2294.907 kb on + strand, within Xcc-8004.2348.1at 2294.908 kb on - strand, within Xcc-8004.2348.1at 2294.908 kb on - strand, within Xcc-8004.2348.1at 2294.908 kb on - strand, within Xcc-8004.2348.1at 2295.006 kb on + strand, within Xcc-8004.2348.1at 2295.006 kb on + strand, within Xcc-8004.2348.1at 2295.006 kb on + strand, within Xcc-8004.2348.1at 2295.006 kb on + strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.034 kb on - strand, within Xcc-8004.2348.1at 2295.084 kb on + strand, within Xcc-8004.2348.1at 2295.084 kb on + strand, within Xcc-8004.2348.1at 2295.084 kb on + strand, within Xcc-8004.2348.1at 2295.084 kb on + strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.177 kb on + strand, within Xcc-8004.2348.1at 2295.177 kb on + strand, within Xcc-8004.2348.1at 2295.177 kb on + strand, within Xcc-8004.2348.1at 2295.177 kb on + strand, within Xcc-8004.2348.1at 2295.177 kb on + strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.252 kb on + strand, within Xcc-8004.2348.1at 2295.252 kb on + strand, within Xcc-8004.2348.1at 2295.252 kb on + strand, within Xcc-8004.2348.1at 2295.253 kb on - strand, within Xcc-8004.2348.1at 2295.253 kb on - strand, within Xcc-8004.2348.1at 2295.270 kb on + strand, within Xcc-8004.2348.1at 2295.271 kb on - strand, within Xcc-8004.2348.1at 2295.271 kb on - strand, within Xcc-8004.2348.1at 2295.360 kb on + strandat 2295.360 kb on + strandat 2295.360 kb on + strandat 2295.361 kb on - strandat 2295.446 kb on - strandat 2295.503 kb on + strandat 2295.503 kb on + strandat 2295.503 kb on + strandat 2295.503 kb on + strandat 2295.504 kb on - strandat 2295.504 kb on - strandat 2295.624 kb on + strandat 2295.675 kb on + strandat 2295.676 kb on - strandat 2295.676 kb on - strandat 2295.676 kb on - strandat 2295.676 kb on - strandat 2295.678 kb on + strandat 2295.678 kb on + strandat 2295.678 kb on + strandat 2295.679 kb on - strandat 2295.679 kb on - strandat 2295.679 kb on - strandat 2295.921 kb on + strand, within Xcc-8004.2349.1at 2295.922 kb on - strand, within Xcc-8004.2349.1at 2295.922 kb on - strand, within Xcc-8004.2349.1at 2295.922 kb on - strand, within Xcc-8004.2349.1at 2295.922 kb on - strand, within Xcc-8004.2349.1at 2295.922 kb on - strand, within Xcc-8004.2349.1at 2295.924 kb on + strand, within Xcc-8004.2349.1at 2295.924 kb on + strand, within Xcc-8004.2349.1at 2295.924 kb on + strand, within Xcc-8004.2349.1at 2295.925 kb on - strand, within Xcc-8004.2349.1at 2295.970 kb on - strand, within Xcc-8004.2349.1at 2295.970 kb on - strand, within Xcc-8004.2349.1at 2296.035 kb on + strand, within Xcc-8004.2349.1at 2296.035 kb on + strand, within Xcc-8004.2349.1at 2296.035 kb on + strand, within Xcc-8004.2349.1at 2296.036 kb on - strand, within Xcc-8004.2349.1at 2296.078 kb on + strand, within Xcc-8004.2349.1at 2296.078 kb on + strand, within Xcc-8004.2349.1at 2296.079 kb on - strand, within Xcc-8004.2349.1at 2296.079 kb on - strand, within Xcc-8004.2349.1at 2296.146 kb on + strand, within Xcc-8004.2349.1at 2296.242 kb on + strand, within Xcc-8004.2349.1at 2296.243 kb on - strand, within Xcc-8004.2349.1at 2296.404 kb on + strandat 2296.404 kb on + strandat 2296.404 kb on + strandat 2296.404 kb on + strandat 2296.404 kb on + strandat 2296.405 kb on - strandat 2296.405 kb on - strandat 2296.405 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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2,293,521 - +0.6
2,293,521 - -0.0
2,293,620 - Xcc-8004.2347.1 0.24 -1.2
2,294,173 - -0.2
2,294,173 - -2.1
2,294,185 + -0.3
2,294,271 + +0.3
2,294,272 - -1.0
2,294,272 - +1.1
2,294,481 + Xcc-8004.2348.1 0.15 +3.3
2,294,544 + Xcc-8004.2348.1 0.20 -0.7
2,294,544 + Xcc-8004.2348.1 0.20 +1.3
2,294,544 + Xcc-8004.2348.1 0.20 -0.9
2,294,545 - Xcc-8004.2348.1 0.20 -3.1
2,294,667 + Xcc-8004.2348.1 0.31 -0.2
2,294,676 + Xcc-8004.2348.1 0.32 +0.2
2,294,676 + Xcc-8004.2348.1 0.32 -1.6
2,294,907 + Xcc-8004.2348.1 0.52 -0.6
2,294,907 + Xcc-8004.2348.1 0.52 -2.9
2,294,908 - Xcc-8004.2348.1 0.52 -2.7
2,294,908 - Xcc-8004.2348.1 0.52 -1.4
2,294,908 - Xcc-8004.2348.1 0.52 -1.2
2,295,006 + Xcc-8004.2348.1 0.61 -1.2
2,295,006 + Xcc-8004.2348.1 0.61 -2.8
2,295,006 + Xcc-8004.2348.1 0.61 -1.6
2,295,006 + Xcc-8004.2348.1 0.61 +1.3
2,295,007 - Xcc-8004.2348.1 0.61 -1.1
2,295,007 - Xcc-8004.2348.1 0.61 -0.6
2,295,007 - Xcc-8004.2348.1 0.61 -0.0
2,295,007 - Xcc-8004.2348.1 0.61 +1.4
2,295,007 - Xcc-8004.2348.1 0.61 -2.3
2,295,007 - Xcc-8004.2348.1 0.61 -0.9
2,295,007 - Xcc-8004.2348.1 0.61 -0.1
2,295,034 - Xcc-8004.2348.1 0.63 -2.3
2,295,084 + Xcc-8004.2348.1 0.67 -1.2
2,295,084 + Xcc-8004.2348.1 0.67 +0.7
2,295,084 + Xcc-8004.2348.1 0.67 +1.5
2,295,084 + Xcc-8004.2348.1 0.67 +2.4
2,295,085 - Xcc-8004.2348.1 0.67 -1.4
2,295,085 - Xcc-8004.2348.1 0.67 +2.3
2,295,085 - Xcc-8004.2348.1 0.67 -1.2
2,295,085 - Xcc-8004.2348.1 0.67 +2.1
2,295,085 - Xcc-8004.2348.1 0.67 +0.8
2,295,085 - Xcc-8004.2348.1 0.67 +1.7
2,295,085 - Xcc-8004.2348.1 0.67 -0.4
2,295,177 + Xcc-8004.2348.1 0.75 -0.3
2,295,177 + Xcc-8004.2348.1 0.75 +0.8
2,295,177 + Xcc-8004.2348.1 0.75 +0.7
2,295,177 + Xcc-8004.2348.1 0.75 -2.2
2,295,177 + Xcc-8004.2348.1 0.75 -0.8
2,295,178 - Xcc-8004.2348.1 0.76 +0.0
2,295,178 - Xcc-8004.2348.1 0.76 -2.0
2,295,178 - Xcc-8004.2348.1 0.76 -1.8
2,295,178 - Xcc-8004.2348.1 0.76 -2.4
2,295,178 - Xcc-8004.2348.1 0.76 -1.0
2,295,178 - Xcc-8004.2348.1 0.76 -1.6
2,295,178 - Xcc-8004.2348.1 0.76 +1.3
2,295,178 - Xcc-8004.2348.1 0.76 -0.9
2,295,252 + Xcc-8004.2348.1 0.82 +0.5
2,295,252 + Xcc-8004.2348.1 0.82 +1.1
2,295,252 + Xcc-8004.2348.1 0.82 +0.9
2,295,253 - Xcc-8004.2348.1 0.82 +1.5
2,295,253 - Xcc-8004.2348.1 0.82 -0.4
2,295,270 + Xcc-8004.2348.1 0.84 -1.7
2,295,271 - Xcc-8004.2348.1 0.84 -1.6
2,295,271 - Xcc-8004.2348.1 0.84 +2.3
2,295,360 + -0.2
2,295,360 + +0.2
2,295,360 + -0.1
2,295,361 - +2.3
2,295,446 - -1.4
2,295,503 + -0.4
2,295,503 + -2.1
2,295,503 + -1.8
2,295,503 + -0.9
2,295,504 - +1.4
2,295,504 - -0.4
2,295,624 + -1.3
2,295,675 + -2.1
2,295,676 - -0.8
2,295,676 - -0.3
2,295,676 - -2.7
2,295,676 - -1.5
2,295,678 + -1.2
2,295,678 + -2.0
2,295,678 + -0.5
2,295,679 - -1.1
2,295,679 - -5.3
2,295,679 - -1.2
2,295,921 + Xcc-8004.2349.1 0.39 +0.2
2,295,922 - Xcc-8004.2349.1 0.39 -0.7
2,295,922 - Xcc-8004.2349.1 0.39 +1.7
2,295,922 - Xcc-8004.2349.1 0.39 -1.8
2,295,922 - Xcc-8004.2349.1 0.39 -0.9
2,295,922 - Xcc-8004.2349.1 0.39 +1.5
2,295,924 + Xcc-8004.2349.1 0.40 -0.6
2,295,924 + Xcc-8004.2349.1 0.40 -1.6
2,295,924 + Xcc-8004.2349.1 0.40 +1.3
2,295,925 - Xcc-8004.2349.1 0.40 -0.9
2,295,970 - Xcc-8004.2349.1 0.45 -0.2
2,295,970 - Xcc-8004.2349.1 0.45 -2.4
2,296,035 + Xcc-8004.2349.1 0.54 -0.1
2,296,035 + Xcc-8004.2349.1 0.54 +0.2
2,296,035 + Xcc-8004.2349.1 0.54 +0.3
2,296,036 - Xcc-8004.2349.1 0.54 -0.7
2,296,078 + Xcc-8004.2349.1 0.59 -0.8
2,296,078 + Xcc-8004.2349.1 0.59 -1.2
2,296,079 - Xcc-8004.2349.1 0.59 +2.3
2,296,079 - Xcc-8004.2349.1 0.59 -0.3
2,296,146 + Xcc-8004.2349.1 0.67 -2.3
2,296,242 + Xcc-8004.2349.1 0.79 +0.2
2,296,243 - Xcc-8004.2349.1 0.80 +0.1
2,296,404 + +2.8
2,296,404 + +0.4
2,296,404 + +0.7
2,296,404 + -1.3
2,296,404 + +0.3
2,296,405 - -0.3
2,296,405 - +1.1
2,296,405 - +0.9

Or see this region's nucleotide sequence