Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.220.1 and Xcc-8004.222.1 are separated by 338 nucleotides Xcc-8004.222.1 and Xcc-8004.223.1 are separated by 80 nucleotides
Xcc-8004.220.1: Xcc-8004.220.1 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation, at 216,439 to 217,911
Xcc-8004.220.1
Xcc-8004.222.1: Xcc-8004.222.1 - Cysteine desulfurase (EC 2.8.1.7), at 218,250 to 218,906
Xcc-8004.222.1
Xcc-8004.223.1: Xcc-8004.223.1 - FIG01211456: hypothetical protein, at 218,987 to 220,276
Xcc-8004.223.1
Position (kb) 218
219 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 217.532 kb on - strand, within Xcc-8004.220.1 at 217.554 kb on + strand, within Xcc-8004.220.1 at 217.555 kb on - strand, within Xcc-8004.220.1 at 217.889 kb on + strand at 217.925 kb on + strand at 217.926 kb on - strand at 217.926 kb on - strand at 217.984 kb on + strand at 217.984 kb on + strand at 218.085 kb on + strand at 218.148 kb on + strand at 218.148 kb on + strand at 218.148 kb on + strand at 218.149 kb on - strand at 218.149 kb on - strand at 218.149 kb on - strand at 218.149 kb on - strand at 218.219 kb on + strand at 218.219 kb on + strand at 218.219 kb on + strand at 218.220 kb on - strand at 218.220 kb on - strand at 218.220 kb on - strand at 218.304 kb on - strand at 218.407 kb on + strand, within Xcc-8004.222.1 at 218.407 kb on + strand, within Xcc-8004.222.1 at 218.407 kb on + strand, within Xcc-8004.222.1 at 218.828 kb on + strand, within Xcc-8004.222.1 at 218.828 kb on + strand, within Xcc-8004.222.1 at 218.828 kb on + strand, within Xcc-8004.222.1 at 218.829 kb on - strand, within Xcc-8004.222.1 at 218.829 kb on - strand, within Xcc-8004.222.1 at 218.829 kb on - strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.830 kb on + strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.831 kb on - strand, within Xcc-8004.222.1 at 218.932 kb on + strand at 218.932 kb on + strand at 218.932 kb on + strand at 218.933 kb on - strand at 218.986 kb on + strand at 218.986 kb on + strand at 218.986 kb on + strand at 218.987 kb on - strand at 218.987 kb on - strand at 218.987 kb on - strand at 218.987 kb on - strand at 219.075 kb on + strand at 219.076 kb on - strand at 219.212 kb on + strand, within Xcc-8004.223.1 at 219.212 kb on + strand, within Xcc-8004.223.1 at 219.213 kb on - strand, within Xcc-8004.223.1 at 219.213 kb on - strand, within Xcc-8004.223.1 at 219.213 kb on - strand, within Xcc-8004.223.1 at 219.213 kb on - strand, within Xcc-8004.223.1 at 219.213 kb on - strand, within Xcc-8004.223.1 at 219.254 kb on + strand, within Xcc-8004.223.1 at 219.254 kb on + strand, within Xcc-8004.223.1 at 219.254 kb on + strand, within Xcc-8004.223.1 at 219.254 kb on + strand, within Xcc-8004.223.1 at 219.255 kb on - strand, within Xcc-8004.223.1 at 219.255 kb on - strand, within Xcc-8004.223.1 at 219.255 kb on - strand, within Xcc-8004.223.1 at 219.255 kb on - strand, within Xcc-8004.223.1 at 219.255 kb on - strand, within Xcc-8004.223.1 at 219.255 kb on - strand, within Xcc-8004.223.1 at 219.255 kb on - strand, within Xcc-8004.223.1 at 219.255 kb on - strand, within Xcc-8004.223.1 at 219.255 kb on - strand, within Xcc-8004.223.1 at 219.255 kb on - strand, within Xcc-8004.223.1 at 219.255 kb on - strand, within Xcc-8004.223.1 at 219.257 kb on + strand, within Xcc-8004.223.1 at 219.257 kb on + strand, within Xcc-8004.223.1 at 219.257 kb on + strand, within Xcc-8004.223.1 at 219.258 kb on - strand, within Xcc-8004.223.1 at 219.258 kb on - strand, within Xcc-8004.223.1 at 219.335 kb on + strand, within Xcc-8004.223.1 at 219.336 kb on - strand, within Xcc-8004.223.1 at 219.538 kb on + strand, within Xcc-8004.223.1 at 219.538 kb on + strand, within Xcc-8004.223.1 at 219.539 kb on - strand, within Xcc-8004.223.1 at 219.688 kb on + strand, within Xcc-8004.223.1 at 219.748 kb on + strand, within Xcc-8004.223.1 at 219.749 kb on - strand, within Xcc-8004.223.1 at 219.797 kb on + strand, within Xcc-8004.223.1 at 219.797 kb on + strand, within Xcc-8004.223.1 at 219.798 kb on - strand, within Xcc-8004.223.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 217,532 - Xcc-8004.220.1 0.74 -0.3 217,554 + Xcc-8004.220.1 0.76 -0.1 217,555 - Xcc-8004.220.1 0.76 -1.4 217,889 + +0.6 217,925 + +0.2 217,926 - +0.7 217,926 - -0.7 217,984 + +1.2 217,984 + +1.3 218,085 + -0.1 218,148 + -0.9 218,148 + +0.5 218,148 + -2.4 218,149 - +1.0 218,149 - +1.6 218,149 - -2.5 218,149 - -1.5 218,219 + +2.6 218,219 + +1.1 218,219 + +1.3 218,220 - -2.1 218,220 - -1.0 218,220 - -0.0 218,304 - +2.0 218,407 + Xcc-8004.222.1 0.24 -0.9 218,407 + Xcc-8004.222.1 0.24 +0.1 218,407 + Xcc-8004.222.1 0.24 -0.7 218,828 + Xcc-8004.222.1 0.88 +2.2 218,828 + Xcc-8004.222.1 0.88 -3.4 218,828 + Xcc-8004.222.1 0.88 +1.5 218,829 - Xcc-8004.222.1 0.88 +2.5 218,829 - Xcc-8004.222.1 0.88 +1.3 218,829 - Xcc-8004.222.1 0.88 -1.9 218,830 + Xcc-8004.222.1 0.88 +0.5 218,830 + Xcc-8004.222.1 0.88 +0.9 218,830 + Xcc-8004.222.1 0.88 +1.5 218,830 + Xcc-8004.222.1 0.88 -1.8 218,830 + Xcc-8004.222.1 0.88 +1.4 218,830 + Xcc-8004.222.1 0.88 +1.1 218,830 + Xcc-8004.222.1 0.88 -0.7 218,830 + Xcc-8004.222.1 0.88 +0.3 218,830 + Xcc-8004.222.1 0.88 +0.3 218,830 + Xcc-8004.222.1 0.88 -3.0 218,830 + Xcc-8004.222.1 0.88 -3.1 218,830 + Xcc-8004.222.1 0.88 +0.1 218,830 + Xcc-8004.222.1 0.88 -0.1 218,830 + Xcc-8004.222.1 0.88 -2.3 218,830 + Xcc-8004.222.1 0.88 +1.1 218,830 + Xcc-8004.222.1 0.88 +2.0 218,830 + Xcc-8004.222.1 0.88 -0.7 218,830 + Xcc-8004.222.1 0.88 +0.7 218,830 + Xcc-8004.222.1 0.88 -0.1 218,830 + Xcc-8004.222.1 0.88 +0.4 218,831 - Xcc-8004.222.1 0.88 +0.4 218,831 - Xcc-8004.222.1 0.88 -0.7 218,831 - Xcc-8004.222.1 0.88 -1.1 218,831 - Xcc-8004.222.1 0.88 -1.7 218,831 - Xcc-8004.222.1 0.88 -2.2 218,831 - Xcc-8004.222.1 0.88 -1.6 218,831 - Xcc-8004.222.1 0.88 -2.5 218,831 - Xcc-8004.222.1 0.88 -0.0 218,831 - Xcc-8004.222.1 0.88 -2.0 218,831 - Xcc-8004.222.1 0.88 +0.5 218,831 - Xcc-8004.222.1 0.88 -0.9 218,831 - Xcc-8004.222.1 0.88 +0.7 218,831 - Xcc-8004.222.1 0.88 +1.1 218,831 - Xcc-8004.222.1 0.88 -2.3 218,831 - Xcc-8004.222.1 0.88 +1.6 218,932 + +1.8 218,932 + -4.0 218,932 + -0.9 218,933 - -1.0 218,986 + -1.1 218,986 + +1.2 218,986 + -1.4 218,987 - +0.1 218,987 - +5.6 218,987 - +4.4 218,987 - +3.0 219,075 + -3.0 219,076 - -1.1 219,212 + Xcc-8004.223.1 0.17 -0.5 219,212 + Xcc-8004.223.1 0.17 -0.8 219,213 - Xcc-8004.223.1 0.18 -0.8 219,213 - Xcc-8004.223.1 0.18 -2.0 219,213 - Xcc-8004.223.1 0.18 +0.5 219,213 - Xcc-8004.223.1 0.18 -0.2 219,213 - Xcc-8004.223.1 0.18 -1.1 219,254 + Xcc-8004.223.1 0.21 -1.5 219,254 + Xcc-8004.223.1 0.21 -0.1 219,254 + Xcc-8004.223.1 0.21 -1.6 219,254 + Xcc-8004.223.1 0.21 -0.4 219,255 - Xcc-8004.223.1 0.21 +0.6 219,255 - Xcc-8004.223.1 0.21 -0.9 219,255 - Xcc-8004.223.1 0.21 -0.6 219,255 - Xcc-8004.223.1 0.21 -2.1 219,255 - Xcc-8004.223.1 0.21 -2.8 219,255 - Xcc-8004.223.1 0.21 +0.8 219,255 - Xcc-8004.223.1 0.21 +0.9 219,255 - Xcc-8004.223.1 0.21 -2.0 219,255 - Xcc-8004.223.1 0.21 -1.5 219,255 - Xcc-8004.223.1 0.21 +3.3 219,255 - Xcc-8004.223.1 0.21 -0.2 219,257 + Xcc-8004.223.1 0.21 +1.3 219,257 + Xcc-8004.223.1 0.21 -0.5 219,257 + Xcc-8004.223.1 0.21 +0.8 219,258 - Xcc-8004.223.1 0.21 -0.3 219,258 - Xcc-8004.223.1 0.21 -2.4 219,335 + Xcc-8004.223.1 0.27 +1.9 219,336 - Xcc-8004.223.1 0.27 +1.3 219,538 + Xcc-8004.223.1 0.43 -2.4 219,538 + Xcc-8004.223.1 0.43 +0.7 219,539 - Xcc-8004.223.1 0.43 -3.8 219,688 + Xcc-8004.223.1 0.54 -1.7 219,748 + Xcc-8004.223.1 0.59 -1.1 219,749 - Xcc-8004.223.1 0.59 +0.6 219,797 + Xcc-8004.223.1 0.63 +4.8 219,797 + Xcc-8004.223.1 0.63 -0.5 219,798 - Xcc-8004.223.1 0.63 -0.7
Or see this region's nucleotide sequence