Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1970.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1969.1 and Xcc-8004.1970.1 are separated by 114 nucleotidesXcc-8004.1970.1 and Xcc-8004.1971.1 are separated by 24 nucleotidesXcc-8004.1971.1 and Xcc-8004.1972.1 overlap by 4 nucleotides Xcc-8004.1969.1: Xcc-8004.1969.1 - Phosphoglucosamine mutase (EC 5.4.2.10), at 1,897,559 to 1,898,908 Xcc-8004.1969.1 Xcc-8004.1970.1: Xcc-8004.1970.1 - Oxidoreductase, at 1,899,023 to 1,899,961 Xcc-8004.1970.1 Xcc-8004.1971.1: Xcc-8004.1971.1 - Copper binding protein, plastocyanin/azurin family, at 1,899,986 to 1,900,855 Xcc-8004.1971.1 Xcc-8004.1972.1: Xcc-8004.1972.1 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 1,900,852 to 1,903,215 Xcc-8004.1972.1 Position (kb) 1899 1900Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1898.958 kb on + strandat 1898.958 kb on + strandat 1898.958 kb on + strandat 1898.958 kb on + strandat 1898.958 kb on + strandat 1898.958 kb on + strandat 1898.958 kb on + strandat 1898.958 kb on + strandat 1898.959 kb on - strandat 1898.959 kb on - strandat 1898.959 kb on - strandat 1898.959 kb on - strandat 1898.959 kb on - strandat 1898.967 kb on + strandat 1898.967 kb on + strandat 1899.021 kb on + strandat 1899.022 kb on + strandat 1899.022 kb on + strandat 1899.022 kb on + strandat 1899.022 kb on + strandat 1899.022 kb on + strandat 1899.023 kb on - strandat 1899.023 kb on - strandat 1899.023 kb on - strandat 1899.170 kb on + strand, within Xcc-8004.1970.1at 1899.170 kb on + strand, within Xcc-8004.1970.1at 1899.221 kb on + strand, within Xcc-8004.1970.1at 1899.221 kb on + strand, within Xcc-8004.1970.1at 1899.222 kb on - strand, within Xcc-8004.1970.1at 1899.222 kb on - strand, within Xcc-8004.1970.1at 1899.222 kb on - strand, within Xcc-8004.1970.1at 1899.222 kb on - strand, within Xcc-8004.1970.1at 1899.222 kb on - strand, within Xcc-8004.1970.1at 1899.254 kb on + strand, within Xcc-8004.1970.1at 1899.256 kb on + strand, within Xcc-8004.1970.1at 1899.256 kb on + strand, within Xcc-8004.1970.1at 1899.256 kb on + strand, within Xcc-8004.1970.1at 1899.257 kb on - strand, within Xcc-8004.1970.1at 1899.413 kb on + strand, within Xcc-8004.1970.1at 1899.413 kb on + strand, within Xcc-8004.1970.1at 1899.414 kb on - strand, within Xcc-8004.1970.1at 1899.414 kb on - strand, within Xcc-8004.1970.1at 1899.422 kb on + strand, within Xcc-8004.1970.1at 1899.422 kb on + strand, within Xcc-8004.1970.1at 1899.422 kb on + strand, within Xcc-8004.1970.1at 1899.422 kb on + strand, within Xcc-8004.1970.1at 1899.423 kb on - strand, within Xcc-8004.1970.1at 1899.423 kb on - strand, within Xcc-8004.1970.1at 1899.494 kb on + strand, within Xcc-8004.1970.1at 1899.494 kb on + strand, within Xcc-8004.1970.1at 1899.495 kb on - strand, within Xcc-8004.1970.1at 1899.495 kb on - strand, within Xcc-8004.1970.1at 1899.495 kb on - strand, within Xcc-8004.1970.1at 1899.579 kb on + strand, within Xcc-8004.1970.1at 1899.579 kb on + strand, within Xcc-8004.1970.1at 1899.579 kb on + strand, within Xcc-8004.1970.1at 1899.580 kb on - strand, within Xcc-8004.1970.1at 1899.580 kb on - strand, within Xcc-8004.1970.1at 1899.713 kb on - strand, within Xcc-8004.1970.1at 1899.749 kb on + strand, within Xcc-8004.1970.1at 1899.749 kb on + strand, within Xcc-8004.1970.1at 1899.750 kb on - strand, within Xcc-8004.1970.1at 1899.959 kb on + strandat 1899.960 kb on - strandat 1899.985 kb on + strandat 1899.986 kb on - strandat 1899.986 kb on - strandat 1900.174 kb on - strand, within Xcc-8004.1971.1at 1900.174 kb on - strand, within Xcc-8004.1971.1at 1900.448 kb on + strand, within Xcc-8004.1971.1at 1900.448 kb on + strand, within Xcc-8004.1971.1at 1900.448 kb on + strand, within Xcc-8004.1971.1at 1900.448 kb on + strand, within Xcc-8004.1971.1at 1900.448 kb on + strand, within Xcc-8004.1971.1at 1900.449 kb on - strand, within Xcc-8004.1971.1at 1900.449 kb on - strand, within Xcc-8004.1971.1at 1900.449 kb on - strand, within Xcc-8004.1971.1at 1900.449 kb on - strand, within Xcc-8004.1971.1at 1900.574 kb on + strand, within Xcc-8004.1971.1at 1900.575 kb on - strand, within Xcc-8004.1971.1at 1900.576 kb on + strand, within Xcc-8004.1971.1at 1900.576 kb on + strand, within Xcc-8004.1971.1at 1900.576 kb on + strand, within Xcc-8004.1971.1at 1900.576 kb on + strand, within Xcc-8004.1971.1at 1900.576 kb on + strand, within Xcc-8004.1971.1at 1900.576 kb on + strand, within Xcc-8004.1971.1at 1900.577 kb on - strand, within Xcc-8004.1971.1at 1900.577 kb on - strand, within Xcc-8004.1971.1at 1900.577 kb on - strand, within Xcc-8004.1971.1at 1900.577 kb on - strand, within Xcc-8004.1971.1at 1900.577 kb on - strand, within Xcc-8004.1971.1at 1900.577 kb on - strand, within Xcc-8004.1971.1at 1900.577 kb on - strand, within Xcc-8004.1971.1at 1900.577 kb on - strand, within Xcc-8004.1971.1at 1900.577 kb on - strand, within Xcc-8004.1971.1at 1900.598 kb on + strand, within Xcc-8004.1971.1at 1900.598 kb on + strand, within Xcc-8004.1971.1at 1900.598 kb on + strand, within Xcc-8004.1971.1at 1900.599 kb on - strand, within Xcc-8004.1971.1at 1900.599 kb on - strand, within Xcc-8004.1971.1at 1900.599 kb on - strand, within Xcc-8004.1971.1at 1900.655 kb on + strand, within Xcc-8004.1971.1at 1900.655 kb on + strand, within Xcc-8004.1971.1at 1900.655 kb on + strand, within Xcc-8004.1971.1at 1900.655 kb on + strand, within Xcc-8004.1971.1at 1900.655 kb on + strand, within Xcc-8004.1971.1at 1900.656 kb on - strand, within Xcc-8004.1971.1at 1900.656 kb on - strand, within Xcc-8004.1971.1at 1900.656 kb on - strand, within Xcc-8004.1971.1at 1900.656 kb on - strand, within Xcc-8004.1971.1at 1900.656 kb on - strand, within Xcc-8004.1971.1at 1900.656 kb on - strand, within Xcc-8004.1971.1at 1900.873 kb on - strandat 1900.873 kb on - strandat 1900.873 kb on - strandat 1900.873 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
remove
1,898,958 + -2.4
1,898,958 + -1.8
1,898,958 + -2.0
1,898,958 + -0.2
1,898,958 + +0.6
1,898,958 + +0.8
1,898,958 + -0.6
1,898,958 + +1.1
1,898,959 - -2.4
1,898,959 - -0.7
1,898,959 - +1.1
1,898,959 - +0.4
1,898,959 - +1.6
1,898,967 + +2.1
1,898,967 + +1.8
1,899,021 + -0.3
1,899,022 + -1.7
1,899,022 + -0.6
1,899,022 + -0.2
1,899,022 + -0.8
1,899,022 + +0.2
1,899,023 - -1.7
1,899,023 - +0.1
1,899,023 - -3.3
1,899,170 + Xcc-8004.1970.1 0.16 -1.0
1,899,170 + Xcc-8004.1970.1 0.16 +0.9
1,899,221 + Xcc-8004.1970.1 0.21 +0.2
1,899,221 + Xcc-8004.1970.1 0.21 +0.4
1,899,222 - Xcc-8004.1970.1 0.21 +1.0
1,899,222 - Xcc-8004.1970.1 0.21 +0.2
1,899,222 - Xcc-8004.1970.1 0.21 -0.1
1,899,222 - Xcc-8004.1970.1 0.21 +0.9
1,899,222 - Xcc-8004.1970.1 0.21 -0.3
1,899,254 + Xcc-8004.1970.1 0.25 -1.7
1,899,256 + Xcc-8004.1970.1 0.25 +3.9
1,899,256 + Xcc-8004.1970.1 0.25 -0.1
1,899,256 + Xcc-8004.1970.1 0.25 +2.1
1,899,257 - Xcc-8004.1970.1 0.25 +2.0
1,899,413 + Xcc-8004.1970.1 0.42 -1.0
1,899,413 + Xcc-8004.1970.1 0.42 -0.8
1,899,414 - Xcc-8004.1970.1 0.42 +2.5
1,899,414 - Xcc-8004.1970.1 0.42 -1.3
1,899,422 + Xcc-8004.1970.1 0.42 +0.3
1,899,422 + Xcc-8004.1970.1 0.42 -0.4
1,899,422 + Xcc-8004.1970.1 0.42 +0.0
1,899,422 + Xcc-8004.1970.1 0.42 -0.5
1,899,423 - Xcc-8004.1970.1 0.43 -2.7
1,899,423 - Xcc-8004.1970.1 0.43 -1.3
1,899,494 + Xcc-8004.1970.1 0.50 +2.7
1,899,494 + Xcc-8004.1970.1 0.50 -1.1
1,899,495 - Xcc-8004.1970.1 0.50 +2.1
1,899,495 - Xcc-8004.1970.1 0.50 -2.0
1,899,495 - Xcc-8004.1970.1 0.50 +1.8
1,899,579 + Xcc-8004.1970.1 0.59 -1.5
1,899,579 + Xcc-8004.1970.1 0.59 -2.9
1,899,579 + Xcc-8004.1970.1 0.59 +0.8
1,899,580 - Xcc-8004.1970.1 0.59 -1.6
1,899,580 - Xcc-8004.1970.1 0.59 -0.6
1,899,713 - Xcc-8004.1970.1 0.73 -1.5
1,899,749 + Xcc-8004.1970.1 0.77 +0.6
1,899,749 + Xcc-8004.1970.1 0.77 +1.4
1,899,750 - Xcc-8004.1970.1 0.77 +1.4
1,899,959 + -0.0
1,899,960 - -0.6
1,899,985 + +2.3
1,899,986 - -1.0
1,899,986 - -0.6
1,900,174 - Xcc-8004.1971.1 0.22 +1.1
1,900,174 - Xcc-8004.1971.1 0.22 +1.7
1,900,448 + Xcc-8004.1971.1 0.53 +0.8
1,900,448 + Xcc-8004.1971.1 0.53 +0.1
1,900,448 + Xcc-8004.1971.1 0.53 -1.3
1,900,448 + Xcc-8004.1971.1 0.53 +0.4
1,900,448 + Xcc-8004.1971.1 0.53 -0.3
1,900,449 - Xcc-8004.1971.1 0.53 -0.1
1,900,449 - Xcc-8004.1971.1 0.53 -1.2
1,900,449 - Xcc-8004.1971.1 0.53 -1.3
1,900,449 - Xcc-8004.1971.1 0.53 +0.6
1,900,574 + Xcc-8004.1971.1 0.68 -1.1
1,900,575 - Xcc-8004.1971.1 0.68 -1.0
1,900,576 + Xcc-8004.1971.1 0.68 +0.7
1,900,576 + Xcc-8004.1971.1 0.68 -2.4
1,900,576 + Xcc-8004.1971.1 0.68 -1.3
1,900,576 + Xcc-8004.1971.1 0.68 -0.0
1,900,576 + Xcc-8004.1971.1 0.68 -2.2
1,900,576 + Xcc-8004.1971.1 0.68 +2.6
1,900,577 - Xcc-8004.1971.1 0.68 +2.2
1,900,577 - Xcc-8004.1971.1 0.68 -1.4
1,900,577 - Xcc-8004.1971.1 0.68 -0.2
1,900,577 - Xcc-8004.1971.1 0.68 +0.8
1,900,577 - Xcc-8004.1971.1 0.68 -2.0
1,900,577 - Xcc-8004.1971.1 0.68 +2.3
1,900,577 - Xcc-8004.1971.1 0.68 -0.3
1,900,577 - Xcc-8004.1971.1 0.68 +0.7
1,900,577 - Xcc-8004.1971.1 0.68 -0.0
1,900,598 + Xcc-8004.1971.1 0.70 +1.2
1,900,598 + Xcc-8004.1971.1 0.70 +0.7
1,900,598 + Xcc-8004.1971.1 0.70 -0.3
1,900,599 - Xcc-8004.1971.1 0.70 +0.1
1,900,599 - Xcc-8004.1971.1 0.70 +1.0
1,900,599 - Xcc-8004.1971.1 0.70 -0.4
1,900,655 + Xcc-8004.1971.1 0.77 -0.1
1,900,655 + Xcc-8004.1971.1 0.77 +1.9
1,900,655 + Xcc-8004.1971.1 0.77 -0.4
1,900,655 + Xcc-8004.1971.1 0.77 +1.0
1,900,655 + Xcc-8004.1971.1 0.77 +1.8
1,900,656 - Xcc-8004.1971.1 0.77 -0.4
1,900,656 - Xcc-8004.1971.1 0.77 -0.5
1,900,656 - Xcc-8004.1971.1 0.77 +0.9
1,900,656 - Xcc-8004.1971.1 0.77 +3.2
1,900,656 - Xcc-8004.1971.1 0.77 -0.6
1,900,656 - Xcc-8004.1971.1 0.77 +4.1
1,900,873 - -0.9
1,900,873 - -1.7
1,900,873 - +0.3
1,900,873 - -0.6

Or see this region's nucleotide sequence