Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1881.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 6 dpi (25 plantes)
1,813,509	+		Xcc-8004.1880.1	0.52	-0.9
1,813,509	+		Xcc-8004.1880.1	0.52	+0.1
1,813,509	+		Xcc-8004.1880.1	0.52	-2.3
1,813,509	+		Xcc-8004.1880.1	0.52	+0.4
1,813,509	+		Xcc-8004.1880.1	0.52	-1.9
1,813,509	+		Xcc-8004.1880.1	0.52	-0.4
1,813,510	-		Xcc-8004.1880.1	0.52	+2.7
1,813,510	-		Xcc-8004.1880.1	0.52	-0.8
1,813,510	-		Xcc-8004.1880.1	0.52	-0.2
1,813,510	-		Xcc-8004.1880.1	0.52	-2.9
1,813,510	-		Xcc-8004.1880.1	0.52	-1.5
1,813,510	-		Xcc-8004.1880.1	0.52	-1.2
1,813,510	-		Xcc-8004.1880.1	0.52	-1.8
1,813,542	+		Xcc-8004.1880.1	0.54	-2.4
1,813,542	+		Xcc-8004.1880.1	0.54	-2.2
1,813,542	+		Xcc-8004.1880.1	0.54	-1.8
1,813,542	+		Xcc-8004.1880.1	0.54	-1.3
1,813,543	-		Xcc-8004.1880.1	0.54	-2.4
1,813,543	-		Xcc-8004.1880.1	0.54	-2.3
1,813,543	-		Xcc-8004.1880.1	0.54	+1.2
1,813,572	+		Xcc-8004.1880.1	0.56	-0.3
1,813,572	+		Xcc-8004.1880.1	0.56	-0.9
1,813,572	+		Xcc-8004.1880.1	0.56	+0.4
1,813,572	+		Xcc-8004.1880.1	0.56	-0.6
1,813,572	+		Xcc-8004.1880.1	0.56	-1.7
1,813,896	+		Xcc-8004.1880.1	0.77	-3.3
1,813,897	-		Xcc-8004.1880.1	0.77	-1.1
1,813,897	-		Xcc-8004.1880.1	0.77	-0.4
1,814,028	+		Xcc-8004.1880.1	0.86	+0.2
1,814,028	+		Xcc-8004.1880.1	0.86	+1.2
1,814,029	-		Xcc-8004.1880.1	0.86	+0.6
1,814,029	-		Xcc-8004.1880.1	0.86	-1.8
1,814,029	-		Xcc-8004.1880.1	0.86	-1.2
1,814,029	-		Xcc-8004.1880.1	0.86	-0.5
1,814,199	+				-1.1
1,814,199	+				-0.8
1,814,199	+				-1.1
1,814,200	-				-1.8
1,814,200	-				-2.8
1,814,200	-				-0.9
1,814,200	-				-2.2
1,814,295	+				+0.2
1,814,295	+				-1.3
1,814,302	-				+0.8
1,814,310	+				+1.6
1,814,310	+				-4.0
1,814,310	+				-0.2
1,814,310	+				-0.5
1,814,310	+				+2.4
1,814,310	+				-0.9
1,814,311	-				-1.9
1,814,311	-				+0.8
1,814,311	-				+0.7
1,814,311	-				-1.9
1,814,311	-				-0.4
1,814,311	-				+2.2
1,814,311	-				-0.1
1,814,311	-				+2.7
1,814,311	-				+1.1
1,814,345	+				-0.9
1,814,365	+				+1.9
1,814,365	+				+0.2
1,814,365	+				+0.5
1,814,365	+				-1.9
1,814,366	-				-1.3
1,814,366	-				+0.4
1,814,366	-				+1.2
1,814,366	-				+0.3
1,814,366	-				-1.9
1,814,366	-				+1.8
1,814,402	+				-2.0
1,814,403	-				-1.3
1,814,446	+				-1.2
1,814,704	+				+0.2
1,814,704	+				-0.3
1,814,704	+				-1.5
1,814,704	+				-0.1
1,814,704	+				+0.7
1,814,704	+				-3.1
1,814,704	+				+0.6
1,814,704	+				-1.3
1,814,704	+				+1.0
1,814,705	-				-1.5
1,814,705	-				-1.5
1,814,705	-				-0.8
1,814,705	-				-2.3
1,814,705	-				-0.9
1,814,887	-		Xcc-8004.1881.1	0.12	-0.8
1,815,055	+		Xcc-8004.1881.1	0.17	-1.4
1,815,056	-		Xcc-8004.1881.1	0.17	-1.5
1,815,400	+		Xcc-8004.1881.1	0.26	-1.9
1,815,401	-		Xcc-8004.1881.1	0.26	-2.5
1,815,817	+		Xcc-8004.1881.1	0.36	-2.8
1,815,817	+		Xcc-8004.1881.1	0.36	+0.8
1,815,817	+		Xcc-8004.1881.1	0.36	-0.3
1,815,818	-		Xcc-8004.1881.1	0.36	-0.5
1,815,818	-		Xcc-8004.1881.1	0.36	+1.4
1,815,818	-		Xcc-8004.1881.1	0.36	-0.9
1,815,818	-		Xcc-8004.1881.1	0.36	-1.9
1,815,818	-		Xcc-8004.1881.1	0.36	-0.2
1,816,252	+		Xcc-8004.1881.1	0.47	-0.3
1,816,252	+		Xcc-8004.1881.1	0.47	-2.2
1,816,252	+		Xcc-8004.1881.1	0.47	+1.8
1,816,252	+		Xcc-8004.1881.1	0.47	+1.4
1,816,252	+		Xcc-8004.1881.1	0.47	+0.2
1,816,252	+		Xcc-8004.1881.1	0.47	+0.4
1,816,252	+		Xcc-8004.1881.1	0.47	-3.4
1,816,252	+		Xcc-8004.1881.1	0.47	-1.1
1,816,252	+		Xcc-8004.1881.1	0.47	-2.2
1,816,252	+		Xcc-8004.1881.1	0.47	+0.1
1,816,252	+		Xcc-8004.1881.1	0.47	-1.7
1,816,253	-		Xcc-8004.1881.1	0.48	-2.2
1,816,253	-		Xcc-8004.1881.1	0.48	-0.1
1,816,253	-		Xcc-8004.1881.1	0.48	-0.7
1,816,253	-		Xcc-8004.1881.1	0.48	+0.0
1,816,253	-		Xcc-8004.1881.1	0.48	-0.3
1,816,253	-		Xcc-8004.1881.1	0.48	+0.7
1,816,253	-		Xcc-8004.1881.1	0.48	+1.2
1,816,253	-		Xcc-8004.1881.1	0.48	-1.9
1,816,253	-		Xcc-8004.1881.1	0.48	-0.4
1,816,253	-		Xcc-8004.1881.1	0.48	-2.5
1,816,253	-		Xcc-8004.1881.1	0.48	-0.8
1,816,253	-		Xcc-8004.1881.1	0.48	-2.3
1,816,328	-		Xcc-8004.1881.1	0.49	-2.0
1,816,696	+		Xcc-8004.1881.1	0.59	-1.1
1,816,696	+		Xcc-8004.1881.1	0.59	-2.5
1,816,696	+		Xcc-8004.1881.1	0.59	-0.8
1,816,696	+		Xcc-8004.1881.1	0.59	-3.2
1,816,696	+		Xcc-8004.1881.1	0.59	-2.5
1,816,696	+		Xcc-8004.1881.1	0.59	+0.7
1,816,696	+		Xcc-8004.1881.1	0.59	+1.5
1,816,697	-		Xcc-8004.1881.1	0.59	-0.1
1,816,697	-		Xcc-8004.1881.1	0.59	-1.0
1,816,697	-		Xcc-8004.1881.1	0.59	+2.4
1,816,697	-		Xcc-8004.1881.1	0.59	+0.2
1,816,697	-		Xcc-8004.1881.1	0.59	+0.0
1,816,697	-		Xcc-8004.1881.1	0.59	-2.2
1,816,697	-		Xcc-8004.1881.1	0.59	-2.2
1,816,697	-		Xcc-8004.1881.1	0.59	-0.4
1,816,697	-		Xcc-8004.1881.1	0.59	+0.5
1,818,190	+				-1.7
1,818,190	+				+1.3
1,818,190	+				-1.7
1,818,190	+				+0.7
1,818,190	+				+0.1
1,818,190	+				-1.9
1,818,190	+				-2.3
1,818,190	+				-1.9
1,818,190	+				+1.4
1,818,191	-				-1.5
1,818,191	-				-3.3
1,818,191	-				+1.3
1,818,191	-				-0.4
1,818,191	-				-1.7
1,818,191	-				-2.5
1,818,292	+				-2.1
1,818,293	-				+3.0
1,818,419	+		Xcc-8004.1882.1	0.15	-2.5
1,818,420	-		Xcc-8004.1882.1	0.15	-0.6
1,818,584	-		Xcc-8004.1882.1	0.37	+0.2
1,818,642	+		Xcc-8004.1882.1	0.44	-3.4
1,818,668	+		Xcc-8004.1882.1	0.48	-2.0
1,818,669	-		Xcc-8004.1882.1	0.48	+2.7
1,818,669	-		Xcc-8004.1882.1	0.48	+0.9
1,818,669	-		Xcc-8004.1882.1	0.48	+1.5
1,818,963	-		Xcc-8004.1882.1	0.87	+0.5
1,818,968	+		Xcc-8004.1882.1	0.87	-1.3
1,818,968	+		Xcc-8004.1882.1	0.87	+0.8
1,818,968	+		Xcc-8004.1882.1	0.87	-0.9
1,818,968	+		Xcc-8004.1882.1	0.87	-1.4
1,818,968	+		Xcc-8004.1882.1	0.87	-0.2
1,818,968	+		Xcc-8004.1882.1	0.87	+0.7
1,818,968	+		Xcc-8004.1882.1	0.87	+0.8
1,818,969	-		Xcc-8004.1882.1	0.88	+0.5
1,818,969	-		Xcc-8004.1882.1	0.88	-0.5
1,818,969	-		Xcc-8004.1882.1	0.88	+3.8
1,818,969	-		Xcc-8004.1882.1	0.88	+2.4
1,818,969	-		Xcc-8004.1882.1	0.88	+0.5
1,819,097	+				+0.7
1,819,220	+				-1.0
1,819,284	+				-1.2
1,819,284	+				-0.2
1,819,284	+				-1.7
1,819,284	+				-0.3
1,819,285	-				+0.5
1,819,285	-				-2.3
1,819,285	-				-0.3
1,819,285	-				+2.4