Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1672.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1670.1 and Xcc-8004.1671.1 are separated by 294 nucleotidesXcc-8004.1671.1 and Xcc-8004.1672.1 are separated by 3 nucleotidesXcc-8004.1672.1 and Xcc-8004.1673.1 are separated by 36 nucleotidesXcc-8004.1673.1 and Xcc-8004.1675.1 are separated by 34 nucleotides Xcc-8004.1670.1: Xcc-8004.1670.1 - FIG01211650: hypothetical protein, at 1,607,193 to 1,607,516 Xcc-8004.1670.1 Xcc-8004.1671.1: Xcc-8004.1671.1 - FIG01211114: hypothetical protein, at 1,607,811 to 1,608,494 Xcc-8004.1671.1 Xcc-8004.1672.1: Xcc-8004.1672.1 - FIG01211150: hypothetical protein, at 1,608,498 to 1,609,322 Xcc-8004.1672.1 Xcc-8004.1673.1: Xcc-8004.1673.1 - Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2), at 1,609,359 to 1,610,012 Xcc-8004.1673.1 Xcc-8004.1675.1: Xcc-8004.1675.1 - hypothetical protein, at 1,610,047 to 1,610,505 Xcc-8004.1675.1 Position (kb) 1608 1609 1610Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1607.546 kb on - strandat 1607.701 kb on + strandat 1607.701 kb on + strandat 1607.701 kb on + strandat 1607.765 kb on + strandat 1607.765 kb on + strandat 1607.766 kb on - strandat 1607.998 kb on + strand, within Xcc-8004.1671.1at 1607.999 kb on - strand, within Xcc-8004.1671.1at 1607.999 kb on - strand, within Xcc-8004.1671.1at 1607.999 kb on - strand, within Xcc-8004.1671.1at 1607.999 kb on - strand, within Xcc-8004.1671.1at 1607.999 kb on - strand, within Xcc-8004.1671.1at 1608.037 kb on + strand, within Xcc-8004.1671.1at 1608.038 kb on - strand, within Xcc-8004.1671.1at 1608.184 kb on + strand, within Xcc-8004.1671.1at 1608.184 kb on + strand, within Xcc-8004.1671.1at 1608.185 kb on - strand, within Xcc-8004.1671.1at 1608.322 kb on + strand, within Xcc-8004.1671.1at 1608.323 kb on - strand, within Xcc-8004.1671.1at 1608.323 kb on - strand, within Xcc-8004.1671.1at 1608.385 kb on + strand, within Xcc-8004.1671.1at 1608.385 kb on + strand, within Xcc-8004.1671.1at 1608.385 kb on + strand, within Xcc-8004.1671.1at 1608.385 kb on + strand, within Xcc-8004.1671.1at 1608.385 kb on + strand, within Xcc-8004.1671.1at 1608.385 kb on + strand, within Xcc-8004.1671.1at 1608.385 kb on + strand, within Xcc-8004.1671.1at 1608.385 kb on + strand, within Xcc-8004.1671.1at 1608.385 kb on + strand, within Xcc-8004.1671.1at 1608.386 kb on - strand, within Xcc-8004.1671.1at 1608.386 kb on - strand, within Xcc-8004.1671.1at 1608.386 kb on - strand, within Xcc-8004.1671.1at 1608.386 kb on - strand, within Xcc-8004.1671.1at 1608.386 kb on - strand, within Xcc-8004.1671.1at 1608.386 kb on - strand, within Xcc-8004.1671.1at 1608.386 kb on - strand, within Xcc-8004.1671.1at 1608.397 kb on + strand, within Xcc-8004.1671.1at 1608.575 kb on + strandat 1608.575 kb on + strandat 1608.575 kb on + strandat 1608.576 kb on - strandat 1608.576 kb on - strandat 1608.576 kb on - strandat 1608.579 kb on + strandat 1608.631 kb on + strand, within Xcc-8004.1672.1at 1608.633 kb on + strand, within Xcc-8004.1672.1at 1608.634 kb on - strand, within Xcc-8004.1672.1at 1608.634 kb on - strand, within Xcc-8004.1672.1at 1608.634 kb on - strand, within Xcc-8004.1672.1at 1608.634 kb on - strand, within Xcc-8004.1672.1at 1608.649 kb on + strand, within Xcc-8004.1672.1at 1608.650 kb on - strand, within Xcc-8004.1672.1at 1608.704 kb on - strand, within Xcc-8004.1672.1at 1608.704 kb on - strand, within Xcc-8004.1672.1at 1608.704 kb on - strand, within Xcc-8004.1672.1at 1608.730 kb on + strand, within Xcc-8004.1672.1at 1608.730 kb on + strand, within Xcc-8004.1672.1at 1608.731 kb on - strand, within Xcc-8004.1672.1at 1608.731 kb on - strand, within Xcc-8004.1672.1at 1608.736 kb on + strand, within Xcc-8004.1672.1at 1608.737 kb on - strand, within Xcc-8004.1672.1at 1608.737 kb on - strand, within Xcc-8004.1672.1at 1608.737 kb on - strand, within Xcc-8004.1672.1at 1608.737 kb on - strand, within Xcc-8004.1672.1at 1608.883 kb on + strand, within Xcc-8004.1672.1at 1608.883 kb on + strand, within Xcc-8004.1672.1at 1608.949 kb on + strand, within Xcc-8004.1672.1at 1608.949 kb on + strand, within Xcc-8004.1672.1at 1608.949 kb on + strand, within Xcc-8004.1672.1at 1608.949 kb on + strand, within Xcc-8004.1672.1at 1608.949 kb on + strand, within Xcc-8004.1672.1at 1608.949 kb on + strand, within Xcc-8004.1672.1at 1608.949 kb on + strand, within Xcc-8004.1672.1at 1608.949 kb on + strand, within Xcc-8004.1672.1at 1608.949 kb on + strand, within Xcc-8004.1672.1at 1608.950 kb on - strand, within Xcc-8004.1672.1at 1608.950 kb on - strand, within Xcc-8004.1672.1at 1608.950 kb on - strand, within Xcc-8004.1672.1at 1608.950 kb on - strand, within Xcc-8004.1672.1at 1608.950 kb on - strand, within Xcc-8004.1672.1at 1608.950 kb on - strand, within Xcc-8004.1672.1at 1609.043 kb on + strand, within Xcc-8004.1672.1at 1609.044 kb on - strand, within Xcc-8004.1672.1at 1609.108 kb on + strand, within Xcc-8004.1672.1at 1609.108 kb on + strand, within Xcc-8004.1672.1at 1609.120 kb on + strand, within Xcc-8004.1672.1at 1609.121 kb on - strand, within Xcc-8004.1672.1at 1609.121 kb on - strand, within Xcc-8004.1672.1at 1609.121 kb on - strand, within Xcc-8004.1672.1at 1609.121 kb on - strand, within Xcc-8004.1672.1at 1609.160 kb on + strand, within Xcc-8004.1672.1at 1609.160 kb on + strand, within Xcc-8004.1672.1at 1609.387 kb on - strandat 1609.400 kb on + strandat 1609.400 kb on + strandat 1609.400 kb on + strandat 1609.401 kb on - strandat 1609.401 kb on - strandat 1609.401 kb on - strandat 1609.401 kb on - strandat 1609.401 kb on - strandat 1609.401 kb on - strandat 1609.401 kb on - strandat 1609.401 kb on - strandat 1609.401 kb on - strandat 1609.465 kb on - strand, within Xcc-8004.1673.1at 1609.669 kb on + strand, within Xcc-8004.1673.1at 1609.670 kb on - strand, within Xcc-8004.1673.1at 1609.750 kb on + strand, within Xcc-8004.1673.1at 1609.750 kb on + strand, within Xcc-8004.1673.1at 1609.750 kb on + strand, within Xcc-8004.1673.1at 1609.750 kb on + strand, within Xcc-8004.1673.1at 1609.751 kb on - strand, within Xcc-8004.1673.1at 1609.751 kb on - strand, within Xcc-8004.1673.1at 1609.751 kb on - strand, within Xcc-8004.1673.1at 1609.970 kb on + strandat 1609.970 kb on + strandat 1610.012 kb on + strandat 1610.012 kb on + strandat 1610.012 kb on + strandat 1610.012 kb on + strandat 1610.012 kb on + strandat 1610.012 kb on + strandat 1610.012 kb on + strandat 1610.012 kb on + strandat 1610.013 kb on - strandat 1610.013 kb on - strandat 1610.013 kb on - strandat 1610.013 kb on - strandat 1610.013 kb on - strandat 1610.013 kb on - strandat 1610.030 kb on + strandat 1610.030 kb on + strandat 1610.030 kb on + strandat 1610.030 kb on + strandat 1610.031 kb on - strandat 1610.031 kb on - strandat 1610.031 kb on - strandat 1610.031 kb on - strandat 1610.031 kb on - strandat 1610.031 kb on - strandat 1610.032 kb on + strandat 1610.112 kb on + strand, within Xcc-8004.1675.1at 1610.112 kb on + strand, within Xcc-8004.1675.1at 1610.112 kb on + strand, within Xcc-8004.1675.1at 1610.113 kb on - strand, within Xcc-8004.1675.1at 1610.113 kb on - strand, within Xcc-8004.1675.1at 1610.216 kb on + strand, within Xcc-8004.1675.1at 1610.216 kb on + strand, within Xcc-8004.1675.1at 1610.217 kb on - strand, within Xcc-8004.1675.1at 1610.217 kb on - strand, within Xcc-8004.1675.1at 1610.217 kb on - strand, within Xcc-8004.1675.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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1,607,546 - -0.0
1,607,701 + +1.1
1,607,701 + -0.3
1,607,701 + +0.6
1,607,765 + +0.6
1,607,765 + -2.0
1,607,766 - +1.3
1,607,998 + Xcc-8004.1671.1 0.27 -0.7
1,607,999 - Xcc-8004.1671.1 0.27 +2.0
1,607,999 - Xcc-8004.1671.1 0.27 -2.0
1,607,999 - Xcc-8004.1671.1 0.27 -3.0
1,607,999 - Xcc-8004.1671.1 0.27 -0.3
1,607,999 - Xcc-8004.1671.1 0.27 -3.0
1,608,037 + Xcc-8004.1671.1 0.33 -1.7
1,608,038 - Xcc-8004.1671.1 0.33 -2.5
1,608,184 + Xcc-8004.1671.1 0.55 -0.1
1,608,184 + Xcc-8004.1671.1 0.55 +1.2
1,608,185 - Xcc-8004.1671.1 0.55 +0.5
1,608,322 + Xcc-8004.1671.1 0.75 -1.0
1,608,323 - Xcc-8004.1671.1 0.75 +0.5
1,608,323 - Xcc-8004.1671.1 0.75 +1.5
1,608,385 + Xcc-8004.1671.1 0.84 -0.8
1,608,385 + Xcc-8004.1671.1 0.84 +0.9
1,608,385 + Xcc-8004.1671.1 0.84 -0.3
1,608,385 + Xcc-8004.1671.1 0.84 -0.8
1,608,385 + Xcc-8004.1671.1 0.84 -2.6
1,608,385 + Xcc-8004.1671.1 0.84 -0.6
1,608,385 + Xcc-8004.1671.1 0.84 -0.7
1,608,385 + Xcc-8004.1671.1 0.84 +0.1
1,608,385 + Xcc-8004.1671.1 0.84 +3.9
1,608,386 - Xcc-8004.1671.1 0.84 -0.3
1,608,386 - Xcc-8004.1671.1 0.84 +3.1
1,608,386 - Xcc-8004.1671.1 0.84 -3.0
1,608,386 - Xcc-8004.1671.1 0.84 +2.2
1,608,386 - Xcc-8004.1671.1 0.84 -0.1
1,608,386 - Xcc-8004.1671.1 0.84 +0.3
1,608,386 - Xcc-8004.1671.1 0.84 +0.4
1,608,397 + Xcc-8004.1671.1 0.86 -1.2
1,608,575 + +0.5
1,608,575 + -1.3
1,608,575 + -2.8
1,608,576 - +0.3
1,608,576 - +1.0
1,608,576 - -0.5
1,608,579 + +0.4
1,608,631 + Xcc-8004.1672.1 0.16 +2.3
1,608,633 + Xcc-8004.1672.1 0.16 +2.1
1,608,634 - Xcc-8004.1672.1 0.16 -0.5
1,608,634 - Xcc-8004.1672.1 0.16 -0.7
1,608,634 - Xcc-8004.1672.1 0.16 +1.8
1,608,634 - Xcc-8004.1672.1 0.16 -2.1
1,608,649 + Xcc-8004.1672.1 0.18 +0.0
1,608,650 - Xcc-8004.1672.1 0.18 -0.6
1,608,704 - Xcc-8004.1672.1 0.25 -0.9
1,608,704 - Xcc-8004.1672.1 0.25 +2.8
1,608,704 - Xcc-8004.1672.1 0.25 -1.4
1,608,730 + Xcc-8004.1672.1 0.28 -0.3
1,608,730 + Xcc-8004.1672.1 0.28 -0.8
1,608,731 - Xcc-8004.1672.1 0.28 +1.4
1,608,731 - Xcc-8004.1672.1 0.28 -0.3
1,608,736 + Xcc-8004.1672.1 0.29 -1.3
1,608,737 - Xcc-8004.1672.1 0.29 -1.6
1,608,737 - Xcc-8004.1672.1 0.29 -1.8
1,608,737 - Xcc-8004.1672.1 0.29 +0.3
1,608,737 - Xcc-8004.1672.1 0.29 -0.2
1,608,883 + Xcc-8004.1672.1 0.47 -2.5
1,608,883 + Xcc-8004.1672.1 0.47 +3.5
1,608,949 + Xcc-8004.1672.1 0.55 -3.5
1,608,949 + Xcc-8004.1672.1 0.55 -2.9
1,608,949 + Xcc-8004.1672.1 0.55 +0.7
1,608,949 + Xcc-8004.1672.1 0.55 +0.2
1,608,949 + Xcc-8004.1672.1 0.55 +0.0
1,608,949 + Xcc-8004.1672.1 0.55 -2.2
1,608,949 + Xcc-8004.1672.1 0.55 +0.2
1,608,949 + Xcc-8004.1672.1 0.55 +0.7
1,608,949 + Xcc-8004.1672.1 0.55 -1.8
1,608,950 - Xcc-8004.1672.1 0.55 +0.3
1,608,950 - Xcc-8004.1672.1 0.55 +1.1
1,608,950 - Xcc-8004.1672.1 0.55 +2.9
1,608,950 - Xcc-8004.1672.1 0.55 -0.3
1,608,950 - Xcc-8004.1672.1 0.55 +2.1
1,608,950 - Xcc-8004.1672.1 0.55 +1.5
1,609,043 + Xcc-8004.1672.1 0.66 -2.1
1,609,044 - Xcc-8004.1672.1 0.66 +0.7
1,609,108 + Xcc-8004.1672.1 0.74 -0.6
1,609,108 + Xcc-8004.1672.1 0.74 -0.3
1,609,120 + Xcc-8004.1672.1 0.75 +0.7
1,609,121 - Xcc-8004.1672.1 0.76 -2.8
1,609,121 - Xcc-8004.1672.1 0.76 -1.0
1,609,121 - Xcc-8004.1672.1 0.76 -1.4
1,609,121 - Xcc-8004.1672.1 0.76 -2.8
1,609,160 + Xcc-8004.1672.1 0.80 -0.6
1,609,160 + Xcc-8004.1672.1 0.80 -0.3
1,609,387 - -2.0
1,609,400 + +0.9
1,609,400 + +0.6
1,609,400 + -0.5
1,609,401 - -1.7
1,609,401 - -2.5
1,609,401 - +0.4
1,609,401 - -0.5
1,609,401 - +2.4
1,609,401 - -3.4
1,609,401 - +0.3
1,609,401 - -0.7
1,609,401 - +0.3
1,609,465 - Xcc-8004.1673.1 0.16 +0.5
1,609,669 + Xcc-8004.1673.1 0.47 -0.5
1,609,670 - Xcc-8004.1673.1 0.48 +0.3
1,609,750 + Xcc-8004.1673.1 0.60 -0.8
1,609,750 + Xcc-8004.1673.1 0.60 -0.7
1,609,750 + Xcc-8004.1673.1 0.60 +1.4
1,609,750 + Xcc-8004.1673.1 0.60 -1.8
1,609,751 - Xcc-8004.1673.1 0.60 -0.9
1,609,751 - Xcc-8004.1673.1 0.60 -1.6
1,609,751 - Xcc-8004.1673.1 0.60 -1.4
1,609,970 + -1.0
1,609,970 + -1.8
1,610,012 + -0.2
1,610,012 + -0.4
1,610,012 + -0.8
1,610,012 + -0.8
1,610,012 + +2.1
1,610,012 + -0.1
1,610,012 + +1.7
1,610,012 + +1.7
1,610,013 - +0.0
1,610,013 - -0.6
1,610,013 - -0.8
1,610,013 - -2.4
1,610,013 - -0.0
1,610,013 - +0.6
1,610,030 + +1.6
1,610,030 + +0.7
1,610,030 + +0.2
1,610,030 + -0.1
1,610,031 - -1.0
1,610,031 - -4.0
1,610,031 - +1.7
1,610,031 - +2.0
1,610,031 - -1.4
1,610,031 - +0.4
1,610,032 + -0.5
1,610,112 + Xcc-8004.1675.1 0.14 +1.0
1,610,112 + Xcc-8004.1675.1 0.14 -0.8
1,610,112 + Xcc-8004.1675.1 0.14 -1.4
1,610,113 - Xcc-8004.1675.1 0.14 -0.3
1,610,113 - Xcc-8004.1675.1 0.14 +0.7
1,610,216 + Xcc-8004.1675.1 0.37 -0.5
1,610,216 + Xcc-8004.1675.1 0.37 +0.3
1,610,217 - Xcc-8004.1675.1 0.37 -1.1
1,610,217 - Xcc-8004.1675.1 0.37 +1.2
1,610,217 - Xcc-8004.1675.1 0.37 -0.5

Or see this region's nucleotide sequence