Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1599.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1598.1 and Xcc-8004.1599.1 are separated by 200 nucleotidesXcc-8004.1599.1 and Xcc-8004.1601.1 are separated by 189 nucleotides Xcc-8004.1598.1: Xcc-8004.1598.1 - Hydrolase, at 1,534,838 to 1,535,833 Xcc-8004.1598.1 Xcc-8004.1599.1: Xcc-8004.1599.1 - hypothetical protein, at 1,536,034 to 1,536,234 Xcc-8004.1599.1 Xcc-8004.1601.1: Xcc-8004.1601.1 - L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17), at 1,536,424 to 1,537,827 Xcc-8004.1601.1 Position (kb) 1536 1537Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1535.038 kb on + strand, within Xcc-8004.1598.1at 1535.038 kb on + strand, within Xcc-8004.1598.1at 1535.039 kb on - strand, within Xcc-8004.1598.1at 1535.047 kb on + strand, within Xcc-8004.1598.1at 1535.115 kb on + strand, within Xcc-8004.1598.1at 1535.115 kb on + strand, within Xcc-8004.1598.1at 1535.167 kb on + strand, within Xcc-8004.1598.1at 1535.220 kb on + strand, within Xcc-8004.1598.1at 1535.220 kb on + strand, within Xcc-8004.1598.1at 1535.220 kb on + strand, within Xcc-8004.1598.1at 1535.221 kb on - strand, within Xcc-8004.1598.1at 1535.221 kb on - strand, within Xcc-8004.1598.1at 1535.221 kb on - strand, within Xcc-8004.1598.1at 1535.223 kb on + strand, within Xcc-8004.1598.1at 1535.223 kb on + strand, within Xcc-8004.1598.1at 1535.223 kb on + strand, within Xcc-8004.1598.1at 1535.223 kb on + strand, within Xcc-8004.1598.1at 1535.223 kb on + strand, within Xcc-8004.1598.1at 1535.224 kb on - strand, within Xcc-8004.1598.1at 1535.224 kb on - strand, within Xcc-8004.1598.1at 1535.224 kb on - strand, within Xcc-8004.1598.1at 1535.224 kb on - strand, within Xcc-8004.1598.1at 1535.224 kb on - strand, within Xcc-8004.1598.1at 1535.238 kb on + strand, within Xcc-8004.1598.1at 1535.238 kb on + strand, within Xcc-8004.1598.1at 1535.239 kb on - strand, within Xcc-8004.1598.1at 1535.281 kb on - strand, within Xcc-8004.1598.1at 1535.281 kb on - strand, within Xcc-8004.1598.1at 1535.376 kb on + strand, within Xcc-8004.1598.1at 1535.676 kb on + strand, within Xcc-8004.1598.1at 1535.676 kb on + strand, within Xcc-8004.1598.1at 1535.676 kb on + strand, within Xcc-8004.1598.1at 1535.707 kb on + strand, within Xcc-8004.1598.1at 1535.707 kb on + strand, within Xcc-8004.1598.1at 1535.707 kb on + strand, within Xcc-8004.1598.1at 1535.763 kb on + strandat 1535.764 kb on - strandat 1535.865 kb on + strandat 1535.866 kb on - strandat 1535.890 kb on + strandat 1535.890 kb on + strandat 1535.890 kb on + strandat 1535.891 kb on - strandat 1535.956 kb on + strandat 1535.996 kb on + strandat 1535.996 kb on + strandat 1535.996 kb on + strandat 1535.997 kb on - strandat 1536.056 kb on + strand, within Xcc-8004.1599.1at 1536.056 kb on + strand, within Xcc-8004.1599.1at 1536.089 kb on + strand, within Xcc-8004.1599.1at 1536.089 kb on + strand, within Xcc-8004.1599.1at 1536.129 kb on + strand, within Xcc-8004.1599.1at 1536.129 kb on + strand, within Xcc-8004.1599.1at 1536.129 kb on + strand, within Xcc-8004.1599.1at 1536.130 kb on - strand, within Xcc-8004.1599.1at 1536.130 kb on - strand, within Xcc-8004.1599.1at 1536.276 kb on - strandat 1536.276 kb on - strandat 1536.473 kb on + strandat 1536.473 kb on + strandat 1536.473 kb on + strandat 1536.473 kb on + strandat 1536.473 kb on + strandat 1536.474 kb on - strandat 1536.474 kb on - strandat 1536.474 kb on - strandat 1536.812 kb on + strand, within Xcc-8004.1601.1at 1536.812 kb on + strand, within Xcc-8004.1601.1at 1536.812 kb on + strand, within Xcc-8004.1601.1at 1536.812 kb on + strand, within Xcc-8004.1601.1at 1536.813 kb on - strand, within Xcc-8004.1601.1at 1536.813 kb on - strand, within Xcc-8004.1601.1at 1536.813 kb on - strand, within Xcc-8004.1601.1at 1536.893 kb on + strand, within Xcc-8004.1601.1at 1536.893 kb on + strand, within Xcc-8004.1601.1at 1536.893 kb on + strand, within Xcc-8004.1601.1at 1536.893 kb on + strand, within Xcc-8004.1601.1at 1536.894 kb on - strand, within Xcc-8004.1601.1at 1536.894 kb on - strand, within Xcc-8004.1601.1at 1536.894 kb on - strand, within Xcc-8004.1601.1at 1536.990 kb on - strand, within Xcc-8004.1601.1at 1536.990 kb on - strand, within Xcc-8004.1601.1at 1537.062 kb on - strand, within Xcc-8004.1601.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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1,535,038 + Xcc-8004.1598.1 0.20 +1.3
1,535,038 + Xcc-8004.1598.1 0.20 +1.3
1,535,039 - Xcc-8004.1598.1 0.20 -0.9
1,535,047 + Xcc-8004.1598.1 0.21 -2.8
1,535,115 + Xcc-8004.1598.1 0.28 +0.8
1,535,115 + Xcc-8004.1598.1 0.28 -0.2
1,535,167 + Xcc-8004.1598.1 0.33 -1.1
1,535,220 + Xcc-8004.1598.1 0.38 +1.2
1,535,220 + Xcc-8004.1598.1 0.38 +1.2
1,535,220 + Xcc-8004.1598.1 0.38 -2.6
1,535,221 - Xcc-8004.1598.1 0.38 -1.2
1,535,221 - Xcc-8004.1598.1 0.38 -0.7
1,535,221 - Xcc-8004.1598.1 0.38 +1.9
1,535,223 + Xcc-8004.1598.1 0.39 +1.3
1,535,223 + Xcc-8004.1598.1 0.39 -2.3
1,535,223 + Xcc-8004.1598.1 0.39 -1.8
1,535,223 + Xcc-8004.1598.1 0.39 -1.1
1,535,223 + Xcc-8004.1598.1 0.39 +0.9
1,535,224 - Xcc-8004.1598.1 0.39 -0.4
1,535,224 - Xcc-8004.1598.1 0.39 +0.1
1,535,224 - Xcc-8004.1598.1 0.39 +3.4
1,535,224 - Xcc-8004.1598.1 0.39 +1.9
1,535,224 - Xcc-8004.1598.1 0.39 -2.2
1,535,238 + Xcc-8004.1598.1 0.40 +0.5
1,535,238 + Xcc-8004.1598.1 0.40 +0.2
1,535,239 - Xcc-8004.1598.1 0.40 +2.6
1,535,281 - Xcc-8004.1598.1 0.44 -0.7
1,535,281 - Xcc-8004.1598.1 0.44 +0.0
1,535,376 + Xcc-8004.1598.1 0.54 +3.3
1,535,676 + Xcc-8004.1598.1 0.84 +0.8
1,535,676 + Xcc-8004.1598.1 0.84 -2.6
1,535,676 + Xcc-8004.1598.1 0.84 +1.5
1,535,707 + Xcc-8004.1598.1 0.87 -2.7
1,535,707 + Xcc-8004.1598.1 0.87 +1.9
1,535,707 + Xcc-8004.1598.1 0.87 -0.3
1,535,763 + -2.0
1,535,764 - -1.1
1,535,865 + +0.0
1,535,866 - -1.5
1,535,890 + +2.3
1,535,890 + -0.8
1,535,890 + +0.4
1,535,891 - +2.2
1,535,956 + +0.5
1,535,996 + +1.7
1,535,996 + -1.4
1,535,996 + +0.9
1,535,997 - +1.1
1,536,056 + Xcc-8004.1599.1 0.11 +0.0
1,536,056 + Xcc-8004.1599.1 0.11 +2.1
1,536,089 + Xcc-8004.1599.1 0.27 +1.8
1,536,089 + Xcc-8004.1599.1 0.27 +1.0
1,536,129 + Xcc-8004.1599.1 0.47 +0.9
1,536,129 + Xcc-8004.1599.1 0.47 -3.3
1,536,129 + Xcc-8004.1599.1 0.47 +1.0
1,536,130 - Xcc-8004.1599.1 0.48 +0.0
1,536,130 - Xcc-8004.1599.1 0.48 -0.7
1,536,276 - -2.6
1,536,276 - +1.6
1,536,473 + +2.0
1,536,473 + +0.8
1,536,473 + -1.6
1,536,473 + -1.1
1,536,473 + +1.1
1,536,474 - -3.2
1,536,474 - +0.5
1,536,474 - -2.1
1,536,812 + Xcc-8004.1601.1 0.28 +1.6
1,536,812 + Xcc-8004.1601.1 0.28 +1.9
1,536,812 + Xcc-8004.1601.1 0.28 +2.0
1,536,812 + Xcc-8004.1601.1 0.28 -0.8
1,536,813 - Xcc-8004.1601.1 0.28 +0.0
1,536,813 - Xcc-8004.1601.1 0.28 +2.2
1,536,813 - Xcc-8004.1601.1 0.28 +1.2
1,536,893 + Xcc-8004.1601.1 0.33 +0.3
1,536,893 + Xcc-8004.1601.1 0.33 +1.3
1,536,893 + Xcc-8004.1601.1 0.33 -0.4
1,536,893 + Xcc-8004.1601.1 0.33 -0.4
1,536,894 - Xcc-8004.1601.1 0.33 -1.8
1,536,894 - Xcc-8004.1601.1 0.33 -2.4
1,536,894 - Xcc-8004.1601.1 0.33 -0.7
1,536,990 - Xcc-8004.1601.1 0.40 -2.3
1,536,990 - Xcc-8004.1601.1 0.40 -2.5
1,537,062 - Xcc-8004.1601.1 0.45 +0.2

Or see this region's nucleotide sequence