Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1431.1 and Xcc-8004.1432.1 are separated by 347 nucleotides Xcc-8004.1432.1 and Xcc-8004.1433.1 are separated by 124 nucleotides Xcc-8004.1433.1 and Xcc-8004.1434.1 are separated by 75 nucleotides Xcc-8004.1434.1 and Xcc-8004.1435.1 are separated by 129 nucleotides
Xcc-8004.1431.1: Xcc-8004.1431.1 - Aspartyl-tRNA synthetase (EC 6.1.1.12), at 1,370,278 to 1,372,044
Xcc-8004.1431.1
Xcc-8004.1432.1: Xcc-8004.1432.1 - acetyltransferase, at 1,372,392 to 1,372,919
Xcc-8004.1432.1
Xcc-8004.1433.1: Xcc-8004.1433.1 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 1,373,044 to 1,373,703
Xcc-8004.1433.1
Xcc-8004.1434.1: Xcc-8004.1434.1 - FIG000859: hypothetical protein YebC, at 1,373,779 to 1,374,507
Xcc-8004.1434.1
Xcc-8004.1435.1: Xcc-8004.1435.1 - Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4), at 1,374,637 to 1,375,161
Xcc-8004.1435.1
Position (kb) 1373
1374 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 1372.133 kb on + strand at 1372.133 kb on + strand at 1372.134 kb on - strand at 1372.521 kb on + strand, within Xcc-8004.1432.1 at 1372.521 kb on + strand, within Xcc-8004.1432.1 at 1372.521 kb on + strand, within Xcc-8004.1432.1 at 1372.522 kb on - strand, within Xcc-8004.1432.1 at 1372.522 kb on - strand, within Xcc-8004.1432.1 at 1372.522 kb on - strand, within Xcc-8004.1432.1 at 1372.677 kb on + strand, within Xcc-8004.1432.1 at 1372.678 kb on - strand, within Xcc-8004.1432.1 at 1372.678 kb on - strand, within Xcc-8004.1432.1 at 1372.692 kb on + strand, within Xcc-8004.1432.1 at 1372.692 kb on + strand, within Xcc-8004.1432.1 at 1372.692 kb on + strand, within Xcc-8004.1432.1 at 1372.692 kb on + strand, within Xcc-8004.1432.1 at 1372.692 kb on + strand, within Xcc-8004.1432.1 at 1372.693 kb on - strand, within Xcc-8004.1432.1 at 1372.812 kb on + strand, within Xcc-8004.1432.1 at 1372.812 kb on + strand, within Xcc-8004.1432.1 at 1372.812 kb on + strand, within Xcc-8004.1432.1 at 1372.813 kb on - strand, within Xcc-8004.1432.1 at 1372.813 kb on - strand, within Xcc-8004.1432.1 at 1372.813 kb on - strand, within Xcc-8004.1432.1 at 1372.813 kb on - strand, within Xcc-8004.1432.1 at 1372.813 kb on - strand, within Xcc-8004.1432.1 at 1372.813 kb on - strand, within Xcc-8004.1432.1 at 1372.822 kb on - strand, within Xcc-8004.1432.1 at 1372.822 kb on - strand, within Xcc-8004.1432.1 at 1372.881 kb on + strand at 1372.881 kb on + strand at 1372.881 kb on + strand at 1372.881 kb on + strand at 1372.881 kb on + strand at 1372.881 kb on + strand at 1372.881 kb on + strand at 1372.882 kb on - strand at 1372.882 kb on - strand at 1372.882 kb on - strand at 1372.917 kb on + strand at 1372.917 kb on + strand at 1372.917 kb on + strand at 1372.918 kb on - strand at 1373.169 kb on + strand, within Xcc-8004.1433.1 at 1373.170 kb on - strand, within Xcc-8004.1433.1 at 1373.201 kb on - strand, within Xcc-8004.1433.1 at 1373.276 kb on + strand, within Xcc-8004.1433.1 at 1373.464 kb on - strand, within Xcc-8004.1433.1 at 1373.628 kb on + strand, within Xcc-8004.1433.1 at 1373.694 kb on + strand at 1373.737 kb on + strand at 1373.784 kb on + strand at 1373.785 kb on - strand at 1374.013 kb on + strand, within Xcc-8004.1434.1 at 1374.014 kb on - strand, within Xcc-8004.1434.1 at 1374.472 kb on + strand at 1374.472 kb on + strand at 1374.472 kb on + strand at 1374.472 kb on + strand at 1374.472 kb on + strand at 1374.472 kb on + strand at 1374.472 kb on + strand at 1374.473 kb on - strand at 1374.505 kb on + strand at 1374.506 kb on - strand at 1374.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 1,372,133 + +1.2 1,372,133 + -0.5 1,372,134 - -0.4 1,372,521 + Xcc-8004.1432.1 0.24 -1.9 1,372,521 + Xcc-8004.1432.1 0.24 -0.2 1,372,521 + Xcc-8004.1432.1 0.24 -0.6 1,372,522 - Xcc-8004.1432.1 0.25 +1.4 1,372,522 - Xcc-8004.1432.1 0.25 +0.4 1,372,522 - Xcc-8004.1432.1 0.25 +0.6 1,372,677 + Xcc-8004.1432.1 0.54 -2.3 1,372,678 - Xcc-8004.1432.1 0.54 -4.1 1,372,678 - Xcc-8004.1432.1 0.54 +0.3 1,372,692 + Xcc-8004.1432.1 0.57 -1.7 1,372,692 + Xcc-8004.1432.1 0.57 -1.3 1,372,692 + Xcc-8004.1432.1 0.57 +1.3 1,372,692 + Xcc-8004.1432.1 0.57 +1.7 1,372,692 + Xcc-8004.1432.1 0.57 -2.0 1,372,693 - Xcc-8004.1432.1 0.57 -1.1 1,372,812 + Xcc-8004.1432.1 0.80 +4.3 1,372,812 + Xcc-8004.1432.1 0.80 -1.9 1,372,812 + Xcc-8004.1432.1 0.80 -0.4 1,372,813 - Xcc-8004.1432.1 0.80 -1.9 1,372,813 - Xcc-8004.1432.1 0.80 +0.7 1,372,813 - Xcc-8004.1432.1 0.80 -0.6 1,372,813 - Xcc-8004.1432.1 0.80 +0.9 1,372,813 - Xcc-8004.1432.1 0.80 -0.0 1,372,813 - Xcc-8004.1432.1 0.80 -1.1 1,372,822 - Xcc-8004.1432.1 0.81 +2.9 1,372,822 - Xcc-8004.1432.1 0.81 -1.0 1,372,881 + +0.8 1,372,881 + -1.8 1,372,881 + -0.9 1,372,881 + +0.3 1,372,881 + +2.2 1,372,881 + -0.6 1,372,881 + -2.7 1,372,882 - +0.3 1,372,882 - -0.1 1,372,882 - -1.1 1,372,917 + -1.5 1,372,917 + -1.3 1,372,917 + +1.0 1,372,918 - +5.8 1,373,169 + Xcc-8004.1433.1 0.19 +1.3 1,373,170 - Xcc-8004.1433.1 0.19 -1.1 1,373,201 - Xcc-8004.1433.1 0.24 +1.6 1,373,276 + Xcc-8004.1433.1 0.35 +0.6 1,373,464 - Xcc-8004.1433.1 0.64 +0.1 1,373,628 + Xcc-8004.1433.1 0.88 -2.6 1,373,694 + -0.5 1,373,737 + -3.0 1,373,784 + +0.1 1,373,785 - -2.1 1,374,013 + Xcc-8004.1434.1 0.32 -2.7 1,374,014 - Xcc-8004.1434.1 0.32 -3.1 1,374,472 + +0.1 1,374,472 + -0.4 1,374,472 + -1.9 1,374,472 + -0.3 1,374,472 + -1.3 1,374,472 + +2.8 1,374,472 + -1.7 1,374,473 - -0.8 1,374,505 + +1.3 1,374,506 - -2.2 1,374,597 - +2.5
Or see this region's nucleotide sequence