Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1396.1 and Xcc-8004.1397.1 overlap by 13 nucleotides Xcc-8004.1397.1 and Xcc-8004.1398.1 overlap by 4 nucleotides
Xcc-8004.1396.1: Xcc-8004.1396.1 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) / Cobyric acid synthase (EC 6.3.5.10), at 1,323,426 to 1,325,879
Xcc-8004.1396.1
Xcc-8004.1397.1: Xcc-8004.1397.1 - Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 1,325,867 to 1,326,388
Xcc-8004.1397.1
Xcc-8004.1398.1: Xcc-8004.1398.1 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 1,326,385 to 1,327,431
Xcc-8004.1398.1
Position (kb) 1325
1326
1327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1325.082 kb on + strand, within Xcc-8004.1396.1 at 1325.682 kb on + strand at 1325.682 kb on + strand at 1325.682 kb on + strand at 1325.682 kb on + strand at 1325.682 kb on + strand at 1325.683 kb on - strand at 1325.954 kb on + strand, within Xcc-8004.1397.1 at 1325.954 kb on + strand, within Xcc-8004.1397.1 at 1325.954 kb on + strand, within Xcc-8004.1397.1 at 1325.954 kb on + strand, within Xcc-8004.1397.1 at 1325.954 kb on + strand, within Xcc-8004.1397.1 at 1325.954 kb on + strand, within Xcc-8004.1397.1 at 1325.955 kb on - strand, within Xcc-8004.1397.1 at 1325.955 kb on - strand, within Xcc-8004.1397.1 at 1325.955 kb on - strand, within Xcc-8004.1397.1 at 1325.955 kb on - strand, within Xcc-8004.1397.1 at 1325.955 kb on - strand, within Xcc-8004.1397.1 at 1325.955 kb on - strand, within Xcc-8004.1397.1 at 1326.322 kb on - strand, within Xcc-8004.1397.1 at 1326.390 kb on + strand at 1326.391 kb on - strand at 1326.574 kb on + strand, within Xcc-8004.1398.1 at 1326.574 kb on + strand, within Xcc-8004.1398.1 at 1326.575 kb on - strand, within Xcc-8004.1398.1 at 1326.575 kb on - strand, within Xcc-8004.1398.1 at 1327.129 kb on + strand, within Xcc-8004.1398.1 at 1327.129 kb on + strand, within Xcc-8004.1398.1 at 1327.129 kb on + strand, within Xcc-8004.1398.1 at 1327.129 kb on + strand, within Xcc-8004.1398.1 at 1327.130 kb on - strand, within Xcc-8004.1398.1 at 1327.130 kb on - strand, within Xcc-8004.1398.1 at 1327.130 kb on - strand, within Xcc-8004.1398.1 at 1327.130 kb on - strand, within Xcc-8004.1398.1 at 1327.130 kb on - strand, within Xcc-8004.1398.1 at 1327.131 kb on + strand, within Xcc-8004.1398.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 1,325,082 + Xcc-8004.1396.1 0.67 +0.9 1,325,682 + +0.1 1,325,682 + +2.4 1,325,682 + -0.8 1,325,682 + +1.6 1,325,682 + +0.9 1,325,683 - -3.6 1,325,954 + Xcc-8004.1397.1 0.17 +3.0 1,325,954 + Xcc-8004.1397.1 0.17 -1.8 1,325,954 + Xcc-8004.1397.1 0.17 -1.9 1,325,954 + Xcc-8004.1397.1 0.17 -0.3 1,325,954 + Xcc-8004.1397.1 0.17 +0.3 1,325,954 + Xcc-8004.1397.1 0.17 -2.1 1,325,955 - Xcc-8004.1397.1 0.17 +1.9 1,325,955 - Xcc-8004.1397.1 0.17 +1.9 1,325,955 - Xcc-8004.1397.1 0.17 +0.0 1,325,955 - Xcc-8004.1397.1 0.17 -0.2 1,325,955 - Xcc-8004.1397.1 0.17 +3.4 1,325,955 - Xcc-8004.1397.1 0.17 +0.0 1,326,322 - Xcc-8004.1397.1 0.87 -1.9 1,326,390 + +1.3 1,326,391 - +3.9 1,326,574 + Xcc-8004.1398.1 0.18 -1.0 1,326,574 + Xcc-8004.1398.1 0.18 +2.1 1,326,575 - Xcc-8004.1398.1 0.18 -1.2 1,326,575 - Xcc-8004.1398.1 0.18 +0.6 1,327,129 + Xcc-8004.1398.1 0.71 +1.5 1,327,129 + Xcc-8004.1398.1 0.71 -1.0 1,327,129 + Xcc-8004.1398.1 0.71 -0.1 1,327,129 + Xcc-8004.1398.1 0.71 +0.6 1,327,130 - Xcc-8004.1398.1 0.71 +3.4 1,327,130 - Xcc-8004.1398.1 0.71 +1.6 1,327,130 - Xcc-8004.1398.1 0.71 +1.0 1,327,130 - Xcc-8004.1398.1 0.71 +2.7 1,327,130 - Xcc-8004.1398.1 0.71 +0.1 1,327,131 + Xcc-8004.1398.1 0.71 +1.5
Or see this region's nucleotide sequence