Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1112.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1110.1 and Xcc-8004.1111.1 are separated by 211 nucleotidesXcc-8004.1111.1 and Xcc-8004.1112.1 are separated by 125 nucleotidesXcc-8004.1112.1 and Xcc-8004.1113.1 overlap by 68 nucleotidesXcc-8004.1113.1 and Xcc-8004.1115.1 overlap by 2 nucleotides Xcc-8004.1110.1: Xcc-8004.1110.1 - DedA protein, at 1,056,170 to 1,058,200 Xcc-8004.1110.1 Xcc-8004.1111.1: Xcc-8004.1111.1 - FIG01211770: hypothetical protein, at 1,058,412 to 1,059,071 Xcc-8004.1111.1 Xcc-8004.1112.1: Xcc-8004.1112.1 - Short chain dehydrogenase, at 1,059,197 to 1,060,012 Xcc-8004.1112.1 Xcc-8004.1113.1: Xcc-8004.1113.1 - hypothetical protein, at 1,059,945 to 1,060,547 Xcc-8004.1113.1 Xcc-8004.1115.1: Xcc-8004.1115.1 - FIG01210202: hypothetical protein, at 1,060,546 to 1,061,592 Xcc-8004.1115.1 Position (kb) 1059 1060 1061Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1058.262 kb on + strandat 1058.262 kb on + strandat 1058.262 kb on + strandat 1058.262 kb on + strandat 1058.263 kb on - strandat 1058.263 kb on - strandat 1058.401 kb on + strandat 1058.401 kb on + strandat 1058.402 kb on - strandat 1058.649 kb on + strand, within Xcc-8004.1111.1at 1058.650 kb on - strand, within Xcc-8004.1111.1at 1058.670 kb on + strand, within Xcc-8004.1111.1at 1058.670 kb on + strand, within Xcc-8004.1111.1at 1058.670 kb on + strand, within Xcc-8004.1111.1at 1058.670 kb on + strand, within Xcc-8004.1111.1at 1058.670 kb on + strand, within Xcc-8004.1111.1at 1058.671 kb on - strand, within Xcc-8004.1111.1at 1058.671 kb on - strand, within Xcc-8004.1111.1at 1058.671 kb on - strand, within Xcc-8004.1111.1at 1058.671 kb on - strand, within Xcc-8004.1111.1at 1058.671 kb on - strand, within Xcc-8004.1111.1at 1058.701 kb on - strand, within Xcc-8004.1111.1at 1058.884 kb on + strand, within Xcc-8004.1111.1at 1058.884 kb on + strand, within Xcc-8004.1111.1at 1058.884 kb on + strand, within Xcc-8004.1111.1at 1058.884 kb on + strand, within Xcc-8004.1111.1at 1058.885 kb on - strand, within Xcc-8004.1111.1at 1058.885 kb on - strand, within Xcc-8004.1111.1at 1058.885 kb on - strand, within Xcc-8004.1111.1at 1058.913 kb on + strand, within Xcc-8004.1111.1at 1058.913 kb on + strand, within Xcc-8004.1111.1at 1058.913 kb on + strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.980 kb on + strand, within Xcc-8004.1111.1at 1058.980 kb on + strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1059.006 kb on + strandat 1059.158 kb on + strandat 1059.158 kb on + strandat 1059.158 kb on + strandat 1059.159 kb on - strandat 1059.159 kb on - strandat 1059.159 kb on - strandat 1059.190 kb on + strandat 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.769 kb on - strand, within Xcc-8004.1112.1at 1059.769 kb on - strand, within Xcc-8004.1112.1at 1059.962 kb on + strandat 1059.990 kb on + strandat 1060.228 kb on + strand, within Xcc-8004.1113.1at 1060.228 kb on + strand, within Xcc-8004.1113.1at 1060.229 kb on - strand, within Xcc-8004.1113.1at 1060.256 kb on + strand, within Xcc-8004.1113.1at 1060.375 kb on - strand, within Xcc-8004.1113.1at 1060.585 kb on + strandat 1060.585 kb on + strandat 1060.586 kb on - strandat 1060.586 kb on - strandat 1060.586 kb on - strandat 1060.623 kb on - strandat 1060.623 kb on - strandat 1060.768 kb on + strand, within Xcc-8004.1115.1at 1060.769 kb on - strand, within Xcc-8004.1115.1at 1060.769 kb on - strand, within Xcc-8004.1115.1at 1060.769 kb on - strand, within Xcc-8004.1115.1at 1060.769 kb on - strand, within Xcc-8004.1115.1at 1060.769 kb on - strand, within Xcc-8004.1115.1at 1060.769 kb on - strand, within Xcc-8004.1115.1at 1060.813 kb on + strand, within Xcc-8004.1115.1at 1060.813 kb on + strand, within Xcc-8004.1115.1at 1060.813 kb on + strand, within Xcc-8004.1115.1at 1060.813 kb on + strand, within Xcc-8004.1115.1at 1060.813 kb on + strand, within Xcc-8004.1115.1at 1060.814 kb on - strand, within Xcc-8004.1115.1at 1060.814 kb on - strand, within Xcc-8004.1115.1at 1060.814 kb on - strand, within Xcc-8004.1115.1at 1060.814 kb on - strand, within Xcc-8004.1115.1at 1060.814 kb on - strand, within Xcc-8004.1115.1at 1060.822 kb on + strand, within Xcc-8004.1115.1at 1060.822 kb on + strand, within Xcc-8004.1115.1at 1060.822 kb on + strand, within Xcc-8004.1115.1at 1060.822 kb on + strand, within Xcc-8004.1115.1at 1060.822 kb on + strand, within Xcc-8004.1115.1at 1060.822 kb on + strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.991 kb on - strand, within Xcc-8004.1115.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
remove
1,058,262 + +0.2
1,058,262 + -1.0
1,058,262 + +0.2
1,058,262 + -0.2
1,058,263 - -2.1
1,058,263 - +1.7
1,058,401 + +0.8
1,058,401 + -2.4
1,058,402 - +3.4
1,058,649 + Xcc-8004.1111.1 0.36 -1.9
1,058,650 - Xcc-8004.1111.1 0.36 -0.4
1,058,670 + Xcc-8004.1111.1 0.39 -0.5
1,058,670 + Xcc-8004.1111.1 0.39 +1.2
1,058,670 + Xcc-8004.1111.1 0.39 +2.4
1,058,670 + Xcc-8004.1111.1 0.39 +0.0
1,058,670 + Xcc-8004.1111.1 0.39 -1.0
1,058,671 - Xcc-8004.1111.1 0.39 -0.5
1,058,671 - Xcc-8004.1111.1 0.39 +2.0
1,058,671 - Xcc-8004.1111.1 0.39 +0.4
1,058,671 - Xcc-8004.1111.1 0.39 -0.6
1,058,671 - Xcc-8004.1111.1 0.39 +5.1
1,058,701 - Xcc-8004.1111.1 0.44 +0.0
1,058,884 + Xcc-8004.1111.1 0.72 +0.6
1,058,884 + Xcc-8004.1111.1 0.72 -0.4
1,058,884 + Xcc-8004.1111.1 0.72 -2.4
1,058,884 + Xcc-8004.1111.1 0.72 +0.7
1,058,885 - Xcc-8004.1111.1 0.72 -0.1
1,058,885 - Xcc-8004.1111.1 0.72 +1.5
1,058,885 - Xcc-8004.1111.1 0.72 -0.2
1,058,913 + Xcc-8004.1111.1 0.76 +0.6
1,058,913 + Xcc-8004.1111.1 0.76 -0.9
1,058,913 + Xcc-8004.1111.1 0.76 +0.1
1,058,914 - Xcc-8004.1111.1 0.76 -1.6
1,058,914 - Xcc-8004.1111.1 0.76 +0.6
1,058,914 - Xcc-8004.1111.1 0.76 +0.9
1,058,914 - Xcc-8004.1111.1 0.76 -0.4
1,058,914 - Xcc-8004.1111.1 0.76 -0.0
1,058,914 - Xcc-8004.1111.1 0.76 +3.2
1,058,914 - Xcc-8004.1111.1 0.76 -0.0
1,058,980 + Xcc-8004.1111.1 0.86 -1.3
1,058,980 + Xcc-8004.1111.1 0.86 +0.8
1,058,981 - Xcc-8004.1111.1 0.86 -0.3
1,058,981 - Xcc-8004.1111.1 0.86 -1.2
1,058,981 - Xcc-8004.1111.1 0.86 +2.0
1,058,981 - Xcc-8004.1111.1 0.86 +2.6
1,058,981 - Xcc-8004.1111.1 0.86 -0.1
1,058,981 - Xcc-8004.1111.1 0.86 -0.9
1,059,006 + +2.3
1,059,158 + -2.4
1,059,158 + -0.8
1,059,158 + -1.7
1,059,159 - -1.2
1,059,159 - +0.5
1,059,159 - -0.7
1,059,190 + +0.5
1,059,768 + Xcc-8004.1112.1 0.70 +0.6
1,059,768 + Xcc-8004.1112.1 0.70 -0.4
1,059,768 + Xcc-8004.1112.1 0.70 -3.0
1,059,768 + Xcc-8004.1112.1 0.70 +0.9
1,059,768 + Xcc-8004.1112.1 0.70 +3.4
1,059,768 + Xcc-8004.1112.1 0.70 +1.4
1,059,769 - Xcc-8004.1112.1 0.70 +1.4
1,059,769 - Xcc-8004.1112.1 0.70 +1.6
1,059,962 + +2.6
1,059,990 + +0.7
1,060,228 + Xcc-8004.1113.1 0.47 -0.8
1,060,228 + Xcc-8004.1113.1 0.47 +1.1
1,060,229 - Xcc-8004.1113.1 0.47 -0.9
1,060,256 + Xcc-8004.1113.1 0.52 -0.8
1,060,375 - Xcc-8004.1113.1 0.71 -0.4
1,060,585 + -0.0
1,060,585 + +2.1
1,060,586 - -0.2
1,060,586 - +0.4
1,060,586 - +1.9
1,060,623 - -2.8
1,060,623 - +0.0
1,060,768 + Xcc-8004.1115.1 0.21 +0.2
1,060,769 - Xcc-8004.1115.1 0.21 -0.2
1,060,769 - Xcc-8004.1115.1 0.21 +1.8
1,060,769 - Xcc-8004.1115.1 0.21 -0.7
1,060,769 - Xcc-8004.1115.1 0.21 +2.1
1,060,769 - Xcc-8004.1115.1 0.21 -0.4
1,060,769 - Xcc-8004.1115.1 0.21 -2.2
1,060,813 + Xcc-8004.1115.1 0.26 -2.1
1,060,813 + Xcc-8004.1115.1 0.26 -0.4
1,060,813 + Xcc-8004.1115.1 0.26 +0.4
1,060,813 + Xcc-8004.1115.1 0.26 +0.9
1,060,813 + Xcc-8004.1115.1 0.26 +1.3
1,060,814 - Xcc-8004.1115.1 0.26 +1.7
1,060,814 - Xcc-8004.1115.1 0.26 -0.5
1,060,814 - Xcc-8004.1115.1 0.26 +0.5
1,060,814 - Xcc-8004.1115.1 0.26 +0.0
1,060,814 - Xcc-8004.1115.1 0.26 +1.3
1,060,822 + Xcc-8004.1115.1 0.26 +2.3
1,060,822 + Xcc-8004.1115.1 0.26 +0.2
1,060,822 + Xcc-8004.1115.1 0.26 +1.5
1,060,822 + Xcc-8004.1115.1 0.26 +0.4
1,060,822 + Xcc-8004.1115.1 0.26 -0.8
1,060,822 + Xcc-8004.1115.1 0.26 +0.9
1,060,823 - Xcc-8004.1115.1 0.26 -0.4
1,060,823 - Xcc-8004.1115.1 0.26 +0.6
1,060,823 - Xcc-8004.1115.1 0.26 +1.2
1,060,823 - Xcc-8004.1115.1 0.26 +0.1
1,060,823 - Xcc-8004.1115.1 0.26 +3.1
1,060,823 - Xcc-8004.1115.1 0.26 +1.4
1,060,823 - Xcc-8004.1115.1 0.26 +1.4
1,060,823 - Xcc-8004.1115.1 0.26 +0.5
1,060,991 - Xcc-8004.1115.1 0.43 -0.2

Or see this region's nucleotide sequence