Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.894.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.892.1 and Xcc-8004.893.1 are separated by 87 nucleotidesXcc-8004.893.1 and Xcc-8004.894.1 are separated by 122 nucleotidesXcc-8004.894.1 and Xcc-8004.895.1 overlap by 4 nucleotides Xcc-8004.892.1: Xcc-8004.892.1 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 838,503 to 839,714 Xcc-8004.892.1 Xcc-8004.893.1: Xcc-8004.893.1 - hypothetical protein, at 839,802 to 840,224 Xcc-8004.893.1 Xcc-8004.894.1: Xcc-8004.894.1 - hypothetical protein, at 840,347 to 840,991 Xcc-8004.894.1 Xcc-8004.895.1: Xcc-8004.895.1 - FIG01213692: hypothetical protein, at 840,988 to 843,900 Xcc-8004.895.1 Position (kb) 840 841Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 839.347 kb on - strand, within Xcc-8004.892.1at 839.451 kb on + strand, within Xcc-8004.892.1at 839.669 kb on - strandat 839.713 kb on - strandat 839.713 kb on - strandat 839.713 kb on - strandat 839.747 kb on - strandat 839.760 kb on + strandat 839.760 kb on + strandat 839.777 kb on - strandat 839.806 kb on + strandat 839.806 kb on + strandat 839.807 kb on - strandat 839.807 kb on - strandat 839.807 kb on - strandat 839.807 kb on - strandat 839.839 kb on + strandat 839.839 kb on + strandat 839.839 kb on + strandat 839.839 kb on + strandat 839.839 kb on + strandat 839.840 kb on - strandat 839.840 kb on - strandat 839.840 kb on - strandat 839.844 kb on + strandat 839.876 kb on - strand, within Xcc-8004.893.1at 839.883 kb on + strand, within Xcc-8004.893.1at 839.883 kb on + strand, within Xcc-8004.893.1at 839.884 kb on - strand, within Xcc-8004.893.1at 839.892 kb on + strand, within Xcc-8004.893.1at 839.893 kb on - strand, within Xcc-8004.893.1at 839.893 kb on - strand, within Xcc-8004.893.1at 839.893 kb on - strand, within Xcc-8004.893.1at 839.968 kb on - strand, within Xcc-8004.893.1at 839.979 kb on + strand, within Xcc-8004.893.1at 839.980 kb on - strand, within Xcc-8004.893.1at 839.980 kb on - strand, within Xcc-8004.893.1at 839.980 kb on - strand, within Xcc-8004.893.1at 839.996 kb on + strand, within Xcc-8004.893.1at 839.996 kb on + strand, within Xcc-8004.893.1at 839.996 kb on + strand, within Xcc-8004.893.1at 839.997 kb on - strand, within Xcc-8004.893.1at 839.997 kb on - strand, within Xcc-8004.893.1at 839.997 kb on - strand, within Xcc-8004.893.1at 840.055 kb on + strand, within Xcc-8004.893.1at 840.055 kb on + strand, within Xcc-8004.893.1at 840.056 kb on - strand, within Xcc-8004.893.1at 840.056 kb on - strand, within Xcc-8004.893.1at 840.056 kb on - strand, within Xcc-8004.893.1at 840.056 kb on - strand, within Xcc-8004.893.1at 840.059 kb on + strand, within Xcc-8004.893.1at 840.059 kb on + strand, within Xcc-8004.893.1at 840.069 kb on - strand, within Xcc-8004.893.1at 840.069 kb on - strand, within Xcc-8004.893.1at 840.069 kb on - strand, within Xcc-8004.893.1at 840.077 kb on + strand, within Xcc-8004.893.1at 840.077 kb on + strand, within Xcc-8004.893.1at 840.078 kb on - strand, within Xcc-8004.893.1at 840.122 kb on - strand, within Xcc-8004.893.1at 840.160 kb on + strand, within Xcc-8004.893.1at 840.160 kb on + strand, within Xcc-8004.893.1at 840.163 kb on - strand, within Xcc-8004.893.1at 840.171 kb on + strand, within Xcc-8004.893.1at 840.197 kb on + strandat 840.197 kb on + strandat 840.251 kb on + strandat 840.281 kb on + strandat 840.301 kb on - strandat 840.313 kb on + strandat 840.314 kb on - strandat 840.346 kb on + strandat 840.346 kb on + strandat 840.347 kb on - strandat 840.355 kb on + strandat 840.356 kb on - strandat 840.371 kb on + strandat 840.372 kb on - strandat 840.372 kb on - strandat 840.372 kb on - strandat 840.393 kb on + strandat 840.463 kb on - strand, within Xcc-8004.894.1at 840.595 kb on + strand, within Xcc-8004.894.1at 840.596 kb on - strand, within Xcc-8004.894.1at 840.596 kb on - strand, within Xcc-8004.894.1at 840.596 kb on - strand, within Xcc-8004.894.1at 840.687 kb on + strand, within Xcc-8004.894.1at 840.699 kb on - strand, within Xcc-8004.894.1at 840.740 kb on + strand, within Xcc-8004.894.1at 840.741 kb on - strand, within Xcc-8004.894.1at 840.741 kb on - strand, within Xcc-8004.894.1at 840.865 kb on + strand, within Xcc-8004.894.1at 840.985 kb on + strandat 840.988 kb on - strandat 841.249 kb on + strandat 841.264 kb on + strandat 841.406 kb on - strand, within Xcc-8004.895.1at 841.508 kb on - strand, within Xcc-8004.895.1at 841.538 kb on - strand, within Xcc-8004.895.1at 841.593 kb on - strand, within Xcc-8004.895.1at 841.713 kb on - strand, within Xcc-8004.895.1at 841.757 kb on + strand, within Xcc-8004.895.1at 841.757 kb on + strand, within Xcc-8004.895.1at 841.832 kb on + strand, within Xcc-8004.895.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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839,347 - Xcc-8004.892.1 0.70 -3.1
839,451 + Xcc-8004.892.1 0.78 -0.5
839,669 - +2.1
839,713 - -1.0
839,713 - -1.3
839,713 - +1.0
839,747 - -2.3
839,760 + +1.2
839,760 + +1.8
839,777 - +2.7
839,806 + -0.0
839,806 + -1.8
839,807 - -1.6
839,807 - +1.5
839,807 - -0.9
839,807 - +2.4
839,839 + -2.2
839,839 + -0.5
839,839 + -1.3
839,839 + -0.3
839,839 + -2.5
839,840 - +0.2
839,840 - -2.6
839,840 - +0.4
839,844 + -1.4
839,876 - Xcc-8004.893.1 0.17 -2.0
839,883 + Xcc-8004.893.1 0.19 +1.5
839,883 + Xcc-8004.893.1 0.19 -0.1
839,884 - Xcc-8004.893.1 0.19 -0.8
839,892 + Xcc-8004.893.1 0.21 -1.4
839,893 - Xcc-8004.893.1 0.22 +4.1
839,893 - Xcc-8004.893.1 0.22 +0.4
839,893 - Xcc-8004.893.1 0.22 -3.5
839,968 - Xcc-8004.893.1 0.39 -1.1
839,979 + Xcc-8004.893.1 0.42 -0.4
839,980 - Xcc-8004.893.1 0.42 -0.3
839,980 - Xcc-8004.893.1 0.42 +2.0
839,980 - Xcc-8004.893.1 0.42 +0.1
839,996 + Xcc-8004.893.1 0.46 -0.5
839,996 + Xcc-8004.893.1 0.46 +2.8
839,996 + Xcc-8004.893.1 0.46 +1.4
839,997 - Xcc-8004.893.1 0.46 +0.3
839,997 - Xcc-8004.893.1 0.46 +0.3
839,997 - Xcc-8004.893.1 0.46 +0.6
840,055 + Xcc-8004.893.1 0.60 -0.2
840,055 + Xcc-8004.893.1 0.60 -2.9
840,056 - Xcc-8004.893.1 0.60 +2.3
840,056 - Xcc-8004.893.1 0.60 -1.2
840,056 - Xcc-8004.893.1 0.60 -0.9
840,056 - Xcc-8004.893.1 0.60 -1.2
840,059 + Xcc-8004.893.1 0.61 -1.5
840,059 + Xcc-8004.893.1 0.61 -0.3
840,069 - Xcc-8004.893.1 0.63 -0.8
840,069 - Xcc-8004.893.1 0.63 +0.0
840,069 - Xcc-8004.893.1 0.63 -0.9
840,077 + Xcc-8004.893.1 0.65 -1.9
840,077 + Xcc-8004.893.1 0.65 -0.5
840,078 - Xcc-8004.893.1 0.65 -1.9
840,122 - Xcc-8004.893.1 0.76 -0.7
840,160 + Xcc-8004.893.1 0.85 -2.0
840,160 + Xcc-8004.893.1 0.85 -0.8
840,163 - Xcc-8004.893.1 0.85 +0.7
840,171 + Xcc-8004.893.1 0.87 -0.8
840,197 + +0.8
840,197 + +0.2
840,251 + +0.8
840,281 + +0.7
840,301 - -0.2
840,313 + -0.8
840,314 - +0.4
840,346 + -0.2
840,346 + -0.1
840,347 - +0.9
840,355 + +0.5
840,356 - -0.3
840,371 + +1.2
840,372 - -0.3
840,372 - +0.6
840,372 - -0.7
840,393 + -1.9
840,463 - Xcc-8004.894.1 0.18 +1.8
840,595 + Xcc-8004.894.1 0.38 +1.8
840,596 - Xcc-8004.894.1 0.39 +3.0
840,596 - Xcc-8004.894.1 0.39 -1.2
840,596 - Xcc-8004.894.1 0.39 -0.3
840,687 + Xcc-8004.894.1 0.53 +0.3
840,699 - Xcc-8004.894.1 0.55 +1.1
840,740 + Xcc-8004.894.1 0.61 +1.5
840,741 - Xcc-8004.894.1 0.61 -1.0
840,741 - Xcc-8004.894.1 0.61 +1.5
840,865 + Xcc-8004.894.1 0.80 +0.2
840,985 + +2.1
840,988 - -1.1
841,249 + +0.6
841,264 + -1.9
841,406 - Xcc-8004.895.1 0.14 +0.1
841,508 - Xcc-8004.895.1 0.18 -1.5
841,538 - Xcc-8004.895.1 0.19 -1.1
841,593 - Xcc-8004.895.1 0.21 +0.6
841,713 - Xcc-8004.895.1 0.25 +0.5
841,757 + Xcc-8004.895.1 0.26 -0.5
841,757 + Xcc-8004.895.1 0.26 +1.2
841,832 + Xcc-8004.895.1 0.29 -0.5

Or see this region's nucleotide sequence