Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.867.1 and Xcc-8004.868.1 are separated by 17 nucleotides Xcc-8004.868.1 and Xcc-8004.869.1 are separated by 0 nucleotides Xcc-8004.869.1 and Xcc-8004.870.1 overlap by 4 nucleotides
Xcc-8004.867.1: Xcc-8004.867.1 - Mobile element protein, at 816,194 to 816,466
Xcc-8004.867.1
Xcc-8004.868.1: Xcc-8004.868.1 - Mobile element protein, at 816,484 to 817,338
Xcc-8004.868.1
Xcc-8004.869.1: Xcc-8004.869.1 - Methanol dehydrogenase large subunit protein (EC 1.1.99.8), at 817,339 to 817,668
Xcc-8004.869.1
Xcc-8004.870.1: Xcc-8004.870.1 - MoxJ protein, at 817,665 to 819,419
Xcc-8004.870.1
Position (kb) 817
818 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 817.393 kb on + strand, within Xcc-8004.869.1 at 817.414 kb on + strand, within Xcc-8004.869.1 at 817.563 kb on + strand, within Xcc-8004.869.1 at 817.563 kb on + strand, within Xcc-8004.869.1 at 817.563 kb on + strand, within Xcc-8004.869.1 at 817.564 kb on - strand, within Xcc-8004.869.1 at 817.564 kb on - strand, within Xcc-8004.869.1 at 817.564 kb on - strand, within Xcc-8004.869.1 at 817.912 kb on + strand, within Xcc-8004.870.1 at 817.913 kb on - strand, within Xcc-8004.870.1 at 818.031 kb on + strand, within Xcc-8004.870.1 at 818.031 kb on + strand, within Xcc-8004.870.1 at 818.032 kb on - strand, within Xcc-8004.870.1 at 818.032 kb on - strand, within Xcc-8004.870.1 at 818.032 kb on - strand, within Xcc-8004.870.1 at 818.034 kb on + strand, within Xcc-8004.870.1 at 818.034 kb on + strand, within Xcc-8004.870.1 at 818.148 kb on + strand, within Xcc-8004.870.1 at 818.148 kb on + strand, within Xcc-8004.870.1 at 818.149 kb on - strand, within Xcc-8004.870.1 at 818.149 kb on - strand, within Xcc-8004.870.1 at 818.262 kb on + strand, within Xcc-8004.870.1 at 818.293 kb on - strand, within Xcc-8004.870.1 at 818.293 kb on - strand, within Xcc-8004.870.1 at 818.293 kb on - strand, within Xcc-8004.870.1 at 818.302 kb on - strand, within Xcc-8004.870.1 at 818.407 kb on - strand, within Xcc-8004.870.1 at 818.469 kb on + strand, within Xcc-8004.870.1 at 818.574 kb on + strand, within Xcc-8004.870.1 at 818.575 kb on - strand, within Xcc-8004.870.1 at 818.640 kb on + strand, within Xcc-8004.870.1 at 818.640 kb on + strand, within Xcc-8004.870.1 at 818.641 kb on - strand, within Xcc-8004.870.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 817,393 + Xcc-8004.869.1 0.16 -0.3 817,414 + Xcc-8004.869.1 0.23 +0.3 817,563 + Xcc-8004.869.1 0.68 -0.1 817,563 + Xcc-8004.869.1 0.68 +0.5 817,563 + Xcc-8004.869.1 0.68 -0.2 817,564 - Xcc-8004.869.1 0.68 +2.2 817,564 - Xcc-8004.869.1 0.68 +1.6 817,564 - Xcc-8004.869.1 0.68 +1.9 817,912 + Xcc-8004.870.1 0.14 -1.1 817,913 - Xcc-8004.870.1 0.14 +2.7 818,031 + Xcc-8004.870.1 0.21 +0.8 818,031 + Xcc-8004.870.1 0.21 +1.7 818,032 - Xcc-8004.870.1 0.21 +0.9 818,032 - Xcc-8004.870.1 0.21 -1.7 818,032 - Xcc-8004.870.1 0.21 +1.6 818,034 + Xcc-8004.870.1 0.21 -2.9 818,034 + Xcc-8004.870.1 0.21 +0.2 818,148 + Xcc-8004.870.1 0.28 -1.5 818,148 + Xcc-8004.870.1 0.28 -1.0 818,149 - Xcc-8004.870.1 0.28 +0.9 818,149 - Xcc-8004.870.1 0.28 +0.2 818,262 + Xcc-8004.870.1 0.34 -0.6 818,293 - Xcc-8004.870.1 0.36 +1.5 818,293 - Xcc-8004.870.1 0.36 -2.5 818,293 - Xcc-8004.870.1 0.36 +0.1 818,302 - Xcc-8004.870.1 0.36 +0.2 818,407 - Xcc-8004.870.1 0.42 +0.1 818,469 + Xcc-8004.870.1 0.46 -0.2 818,574 + Xcc-8004.870.1 0.52 -0.8 818,575 - Xcc-8004.870.1 0.52 -0.3 818,640 + Xcc-8004.870.1 0.56 +0.5 818,640 + Xcc-8004.870.1 0.56 -1.8 818,641 - Xcc-8004.870.1 0.56 -0.8
Or see this region's nucleotide sequence