Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.786.1 and Xcc-8004.787.1 are separated by 30 nucleotides Xcc-8004.787.1 and Xcc-8004.788.1 are separated by 191 nucleotides Xcc-8004.788.1 and Xcc-8004.789.1 are separated by 161 nucleotides
Xcc-8004.786.1: Xcc-8004.786.1 - FIG01210197: hypothetical protein, at 730,992 to 732,872
Xcc-8004.786.1
Xcc-8004.787.1: Xcc-8004.787.1 - Rrf2 family transcriptional regulator, group III, at 732,903 to 733,448
Xcc-8004.787.1
Xcc-8004.788.1: Xcc-8004.788.1 - Serine peptidase, at 733,640 to 733,978
Xcc-8004.788.1
Xcc-8004.789.1: Xcc-8004.789.1 - Thioredoxin reductase (EC 1.8.1.9), at 734,140 to 735,039
Xcc-8004.789.1
Position (kb) 733
734 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 732.822 kb on + strand at 732.822 kb on + strand at 732.822 kb on + strand at 732.823 kb on - strand at 732.862 kb on - strand at 732.862 kb on - strand at 732.862 kb on - strand at 732.871 kb on - strand at 733.128 kb on + strand, within Xcc-8004.787.1 at 733.435 kb on + strand at 733.571 kb on + strand at 733.571 kb on + strand at 733.572 kb on - strand at 733.572 kb on - strand at 733.630 kb on + strand at 733.630 kb on + strand at 733.631 kb on - strand at 733.631 kb on - strand at 733.631 kb on - strand at 733.652 kb on + strand at 733.652 kb on + strand at 733.652 kb on + strand at 733.653 kb on - strand at 733.767 kb on - strand, within Xcc-8004.788.1 at 733.767 kb on - strand, within Xcc-8004.788.1 at 733.905 kb on + strand, within Xcc-8004.788.1 at 733.905 kb on + strand, within Xcc-8004.788.1 at 733.905 kb on + strand, within Xcc-8004.788.1 at 733.958 kb on + strand at 733.958 kb on + strand at 733.959 kb on - strand at 733.959 kb on - strand at 733.959 kb on - strand at 733.959 kb on - strand at 734.146 kb on + strand at 734.147 kb on - strand at 734.147 kb on - strand at 734.174 kb on - strand at 734.174 kb on - strand at 734.548 kb on + strand, within Xcc-8004.789.1 at 734.549 kb on - strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.569 kb on - strand, within Xcc-8004.789.1 at 734.569 kb on - strand, within Xcc-8004.789.1 at 734.569 kb on - strand, within Xcc-8004.789.1 at 734.569 kb on - strand, within Xcc-8004.789.1 at 734.690 kb on + strand, within Xcc-8004.789.1 at 734.690 kb on + strand, within Xcc-8004.789.1 at 734.691 kb on - strand, within Xcc-8004.789.1 at 734.691 kb on - strand, within Xcc-8004.789.1 at 734.691 kb on - strand, within Xcc-8004.789.1 at 734.885 kb on + strand, within Xcc-8004.789.1 at 734.885 kb on + strand, within Xcc-8004.789.1 at 734.886 kb on - strand, within Xcc-8004.789.1 at 734.886 kb on - strand, within Xcc-8004.789.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 732,822 + -1.5 732,822 + +2.1 732,822 + +0.6 732,823 - -0.8 732,862 - -1.0 732,862 - +3.5 732,862 - -0.5 732,871 - -1.6 733,128 + Xcc-8004.787.1 0.41 +1.3 733,435 + +1.1 733,571 + +1.0 733,571 + +0.6 733,572 - -0.3 733,572 - +0.2 733,630 + -0.3 733,630 + -2.4 733,631 - -0.1 733,631 - -0.5 733,631 - +1.1 733,652 + +0.0 733,652 + +3.2 733,652 + -0.9 733,653 - +1.5 733,767 - Xcc-8004.788.1 0.37 -2.0 733,767 - Xcc-8004.788.1 0.37 +1.2 733,905 + Xcc-8004.788.1 0.78 +2.5 733,905 + Xcc-8004.788.1 0.78 -0.1 733,905 + Xcc-8004.788.1 0.78 +0.8 733,958 + +2.7 733,958 + +0.2 733,959 - -0.3 733,959 - -0.4 733,959 - +2.8 733,959 - +0.4 734,146 + -1.0 734,147 - -0.5 734,147 - -1.2 734,174 - +1.1 734,174 - -0.7 734,548 + Xcc-8004.789.1 0.45 +0.4 734,549 - Xcc-8004.789.1 0.45 +0.9 734,568 + Xcc-8004.789.1 0.48 +0.6 734,568 + Xcc-8004.789.1 0.48 +1.8 734,568 + Xcc-8004.789.1 0.48 +0.4 734,568 + Xcc-8004.789.1 0.48 -0.6 734,568 + Xcc-8004.789.1 0.48 +1.6 734,569 - Xcc-8004.789.1 0.48 -0.5 734,569 - Xcc-8004.789.1 0.48 +1.5 734,569 - Xcc-8004.789.1 0.48 +0.6 734,569 - Xcc-8004.789.1 0.48 -0.9 734,690 + Xcc-8004.789.1 0.61 +0.5 734,690 + Xcc-8004.789.1 0.61 -0.7 734,691 - Xcc-8004.789.1 0.61 +2.7 734,691 - Xcc-8004.789.1 0.61 +2.7 734,691 - Xcc-8004.789.1 0.61 -1.4 734,885 + Xcc-8004.789.1 0.83 -1.6 734,885 + Xcc-8004.789.1 0.83 -0.0 734,886 - Xcc-8004.789.1 0.83 -1.4 734,886 - Xcc-8004.789.1 0.83 +1.3
Or see this region's nucleotide sequence