Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.780.1 and Xcc-8004.781.1 are separated by 271 nucleotides Xcc-8004.781.1 and Xcc-8004.782.1 overlap by 4 nucleotides Xcc-8004.782.1 and Xcc-8004.783.1 are separated by 119 nucleotides
Xcc-8004.780.1: Xcc-8004.780.1 - FIG01213532: hypothetical protein, at 725,376 to 726,002
Xcc-8004.780.1
Xcc-8004.781.1: Xcc-8004.781.1 - inner membrane protein, at 726,274 to 726,636
Xcc-8004.781.1
Xcc-8004.782.1: Xcc-8004.782.1 - hypothetical protein, at 726,633 to 726,773
Xcc-8004.782.1
Xcc-8004.783.1: Xcc-8004.783.1 - Dipeptidyl peptidase IV, at 726,893 to 729,217
Xcc-8004.783.1
Position (kb) 726
727 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 725.590 kb on + strand, within Xcc-8004.780.1 at 725.590 kb on + strand, within Xcc-8004.780.1 at 725.591 kb on - strand, within Xcc-8004.780.1 at 725.593 kb on + strand, within Xcc-8004.780.1 at 725.593 kb on + strand, within Xcc-8004.780.1 at 725.594 kb on - strand, within Xcc-8004.780.1 at 725.594 kb on - strand, within Xcc-8004.780.1 at 725.594 kb on - strand, within Xcc-8004.780.1 at 725.594 kb on - strand, within Xcc-8004.780.1 at 725.594 kb on - strand, within Xcc-8004.780.1 at 725.614 kb on + strand, within Xcc-8004.780.1 at 725.626 kb on + strand, within Xcc-8004.780.1 at 725.627 kb on - strand, within Xcc-8004.780.1 at 726.238 kb on - strand at 726.242 kb on + strand at 726.242 kb on + strand at 726.242 kb on + strand at 726.242 kb on + strand at 726.243 kb on - strand at 726.416 kb on - strand, within Xcc-8004.781.1 at 726.416 kb on - strand, within Xcc-8004.781.1 at 726.416 kb on - strand, within Xcc-8004.781.1 at 726.416 kb on - strand, within Xcc-8004.781.1 at 726.484 kb on + strand, within Xcc-8004.781.1 at 726.484 kb on + strand, within Xcc-8004.781.1 at 726.485 kb on - strand, within Xcc-8004.781.1 at 726.485 kb on - strand, within Xcc-8004.781.1 at 726.688 kb on - strand, within Xcc-8004.782.1 at 726.714 kb on + strand, within Xcc-8004.782.1 at 726.715 kb on - strand, within Xcc-8004.782.1 at 726.715 kb on - strand, within Xcc-8004.782.1 at 726.715 kb on - strand, within Xcc-8004.782.1 at 726.771 kb on + strand at 726.937 kb on + strand at 726.937 kb on + strand at 726.951 kb on + strand at 726.952 kb on - strand at 726.952 kb on - strand at 727.089 kb on + strand at 727.090 kb on - strand at 727.179 kb on + strand, within Xcc-8004.783.1 at 727.558 kb on - strand, within Xcc-8004.783.1 at 727.599 kb on + strand, within Xcc-8004.783.1 at 727.600 kb on - strand, within Xcc-8004.783.1 at 727.605 kb on + strand, within Xcc-8004.783.1 at 727.605 kb on + strand, within Xcc-8004.783.1 at 727.605 kb on + strand, within Xcc-8004.783.1 at 727.605 kb on + strand, within Xcc-8004.783.1 at 727.606 kb on - strand, within Xcc-8004.783.1 at 727.606 kb on - strand, within Xcc-8004.783.1 at 727.606 kb on - strand, within Xcc-8004.783.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 725,590 + Xcc-8004.780.1 0.34 +0.1 725,590 + Xcc-8004.780.1 0.34 -0.1 725,591 - Xcc-8004.780.1 0.34 +0.5 725,593 + Xcc-8004.780.1 0.35 +0.7 725,593 + Xcc-8004.780.1 0.35 -0.7 725,594 - Xcc-8004.780.1 0.35 -1.2 725,594 - Xcc-8004.780.1 0.35 -0.9 725,594 - Xcc-8004.780.1 0.35 -0.0 725,594 - Xcc-8004.780.1 0.35 -0.2 725,594 - Xcc-8004.780.1 0.35 +1.6 725,614 + Xcc-8004.780.1 0.38 -0.0 725,626 + Xcc-8004.780.1 0.40 -0.1 725,627 - Xcc-8004.780.1 0.40 -1.4 726,238 - +0.5 726,242 + -0.1 726,242 + +0.4 726,242 + +1.5 726,242 + +0.1 726,243 - -1.2 726,416 - Xcc-8004.781.1 0.39 +1.5 726,416 - Xcc-8004.781.1 0.39 -2.7 726,416 - Xcc-8004.781.1 0.39 +2.5 726,416 - Xcc-8004.781.1 0.39 +1.8 726,484 + Xcc-8004.781.1 0.58 +0.5 726,484 + Xcc-8004.781.1 0.58 -0.3 726,485 - Xcc-8004.781.1 0.58 +2.1 726,485 - Xcc-8004.781.1 0.58 -1.2 726,688 - Xcc-8004.782.1 0.39 +1.2 726,714 + Xcc-8004.782.1 0.57 -1.2 726,715 - Xcc-8004.782.1 0.58 -0.9 726,715 - Xcc-8004.782.1 0.58 +1.6 726,715 - Xcc-8004.782.1 0.58 -1.3 726,771 + -1.0 726,937 + +0.5 726,937 + -1.2 726,951 + +0.5 726,952 - +3.1 726,952 - -0.2 727,089 + -0.8 727,090 - +0.3 727,179 + Xcc-8004.783.1 0.12 +0.9 727,558 - Xcc-8004.783.1 0.29 +0.9 727,599 + Xcc-8004.783.1 0.30 +0.5 727,600 - Xcc-8004.783.1 0.30 +0.2 727,605 + Xcc-8004.783.1 0.31 +0.3 727,605 + Xcc-8004.783.1 0.31 -0.2 727,605 + Xcc-8004.783.1 0.31 -0.3 727,605 + Xcc-8004.783.1 0.31 +2.9 727,606 - Xcc-8004.783.1 0.31 -0.2 727,606 - Xcc-8004.783.1 0.31 +0.5 727,606 - Xcc-8004.783.1 0.31 +1.5
Or see this region's nucleotide sequence