Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.769.1 and Xcc-8004.770.1 are separated by 6 nucleotides Xcc-8004.770.1 and Xcc-8004.771.1 are separated by 27 nucleotides Xcc-8004.771.1 and Xcc-8004.772.1 are separated by 280 nucleotides Xcc-8004.772.1 and Xcc-8004.773.1 are separated by 24 nucleotides Xcc-8004.773.1 and Xcc-8004.774.1 are separated by 283 nucleotides
Xcc-8004.769.1: Xcc-8004.769.1 - Lactoylglutathione lyase and related lyases, at 715,798 to 716,190
Xcc-8004.769.1
Xcc-8004.770.1: Xcc-8004.770.1 - hypothetical protein, at 716,197 to 716,328
Xcc-8004.770.1
Xcc-8004.771.1: Xcc-8004.771.1 - FIG01209961: hypothetical protein, at 716,356 to 716,817
Xcc-8004.771.1
Xcc-8004.772.1: Xcc-8004.772.1 - protease, putative, at 717,098 to 718,027
Xcc-8004.772.1
Xcc-8004.773.1: Xcc-8004.773.1 - Transcriptional regulator marR family, at 718,052 to 718,591
Xcc-8004.773.1
Xcc-8004.774.1: Xcc-8004.774.1 - aminopeptidase N, at 718,875 to 720,230
Xcc-8004.774.1
Position (kb) 717
718
719 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 716.140 kb on + strand, within Xcc-8004.769.1 at 716.141 kb on - strand, within Xcc-8004.769.1 at 716.188 kb on + strand at 716.252 kb on - strand, within Xcc-8004.770.1 at 716.252 kb on - strand, within Xcc-8004.770.1 at 716.256 kb on - strand, within Xcc-8004.770.1 at 716.323 kb on - strand at 716.323 kb on - strand at 716.480 kb on + strand, within Xcc-8004.771.1 at 716.833 kb on + strand at 716.880 kb on + strand at 716.881 kb on - strand at 716.897 kb on + strand at 716.897 kb on + strand at 716.897 kb on + strand at 716.898 kb on - strand at 716.898 kb on - strand at 716.949 kb on + strand at 716.949 kb on + strand at 716.950 kb on - strand at 716.950 kb on - strand at 716.995 kb on - strand at 716.995 kb on - strand at 717.054 kb on + strand at 717.055 kb on - strand at 717.055 kb on - strand at 717.247 kb on + strand, within Xcc-8004.772.1 at 717.248 kb on - strand, within Xcc-8004.772.1 at 717.300 kb on + strand, within Xcc-8004.772.1 at 717.326 kb on - strand, within Xcc-8004.772.1 at 717.326 kb on - strand, within Xcc-8004.772.1 at 717.616 kb on - strand, within Xcc-8004.772.1 at 717.786 kb on - strand, within Xcc-8004.772.1 at 718.029 kb on + strand at 718.030 kb on - strand at 718.030 kb on - strand at 718.301 kb on - strand, within Xcc-8004.773.1 at 718.425 kb on + strand, within Xcc-8004.773.1 at 718.426 kb on - strand, within Xcc-8004.773.1 at 718.426 kb on - strand, within Xcc-8004.773.1 at 718.426 kb on - strand, within Xcc-8004.773.1 at 718.426 kb on - strand, within Xcc-8004.773.1 at 718.458 kb on + strand, within Xcc-8004.773.1 at 718.519 kb on + strand, within Xcc-8004.773.1 at 718.549 kb on - strand at 718.583 kb on + strand at 718.583 kb on + strand at 718.583 kb on + strand at 718.584 kb on - strand at 718.584 kb on - strand at 718.739 kb on + strand at 718.739 kb on + strand at 718.798 kb on + strand at 718.799 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 716,140 + Xcc-8004.769.1 0.87 -0.6 716,141 - Xcc-8004.769.1 0.87 -0.5 716,188 + -0.3 716,252 - Xcc-8004.770.1 0.42 +0.5 716,252 - Xcc-8004.770.1 0.42 +1.2 716,256 - Xcc-8004.770.1 0.45 +0.2 716,323 - +1.0 716,323 - +0.0 716,480 + Xcc-8004.771.1 0.27 +0.5 716,833 + +1.3 716,880 + +0.8 716,881 - -0.3 716,897 + -1.7 716,897 + -1.7 716,897 + -0.1 716,898 - +0.9 716,898 - +0.9 716,949 + +1.1 716,949 + -0.5 716,950 - -0.5 716,950 - -0.0 716,995 - +0.2 716,995 - -1.8 717,054 + -1.7 717,055 - -3.1 717,055 - +1.1 717,247 + Xcc-8004.772.1 0.16 -1.2 717,248 - Xcc-8004.772.1 0.16 -2.8 717,300 + Xcc-8004.772.1 0.22 -0.7 717,326 - Xcc-8004.772.1 0.25 +0.2 717,326 - Xcc-8004.772.1 0.25 -0.4 717,616 - Xcc-8004.772.1 0.56 +0.0 717,786 - Xcc-8004.772.1 0.74 -0.9 718,029 + +0.5 718,030 - -0.8 718,030 - +2.5 718,301 - Xcc-8004.773.1 0.46 +0.2 718,425 + Xcc-8004.773.1 0.69 -0.9 718,426 - Xcc-8004.773.1 0.69 +2.3 718,426 - Xcc-8004.773.1 0.69 -2.6 718,426 - Xcc-8004.773.1 0.69 -0.1 718,426 - Xcc-8004.773.1 0.69 -0.0 718,458 + Xcc-8004.773.1 0.75 +1.7 718,519 + Xcc-8004.773.1 0.86 -0.6 718,549 - -0.0 718,583 + -0.9 718,583 + -0.1 718,583 + +1.2 718,584 - -0.0 718,584 - -0.3 718,739 + +2.0 718,739 + +1.7 718,798 + +0.4 718,799 - +0.5
Or see this region's nucleotide sequence