Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.745.1 and Xcc-8004.746.1 are separated by 29 nucleotides Xcc-8004.746.1 and Xcc-8004.747.1 overlap by 4 nucleotides Xcc-8004.747.1 and Xcc-8004.748.1 are separated by 0 nucleotides
Xcc-8004.745.1: Xcc-8004.745.1 - VirP protein, at 694,436 to 695,122
Xcc-8004.745.1
Xcc-8004.746.1: Xcc-8004.746.1 - Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV, at 695,152 to 695,571
Xcc-8004.746.1
Xcc-8004.747.1: Xcc-8004.747.1 - Serine-protein kinase RsbW (EC 2.7.11.1), at 695,568 to 695,999
Xcc-8004.747.1
Xcc-8004.748.1: Xcc-8004.748.1 - Serine phosphatase RsbU, regulator of sigma subunit, at 696,000 to 698,081
Xcc-8004.748.1
Position (kb) 694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 693.614 kb on + strand at 693.872 kb on + strand at 693.872 kb on + strand at 693.938 kb on + strand at 693.939 kb on - strand at 693.955 kb on - strand at 693.982 kb on + strand at 693.982 kb on + strand at 693.982 kb on + strand at 693.983 kb on - strand at 693.983 kb on - strand at 693.983 kb on - strand at 694.001 kb on + strand at 694.002 kb on - strand at 694.002 kb on - strand at 694.058 kb on - strand at 694.597 kb on - strand, within Xcc-8004.745.1 at 694.632 kb on - strand, within Xcc-8004.745.1 at 694.632 kb on - strand, within Xcc-8004.745.1 at 694.703 kb on + strand, within Xcc-8004.745.1 at 694.703 kb on + strand, within Xcc-8004.745.1 at 694.704 kb on - strand, within Xcc-8004.745.1 at 695.067 kb on + strand at 695.067 kb on + strand at 695.090 kb on - strand at 695.235 kb on - strand, within Xcc-8004.746.1 at 695.235 kb on - strand, within Xcc-8004.746.1 at 695.405 kb on + strand, within Xcc-8004.746.1 at 695.406 kb on - strand, within Xcc-8004.746.1 at 695.490 kb on + strand, within Xcc-8004.746.1 at 695.490 kb on + strand, within Xcc-8004.746.1 at 695.490 kb on + strand, within Xcc-8004.746.1 at 695.491 kb on - strand, within Xcc-8004.746.1 at 695.491 kb on - strand, within Xcc-8004.746.1 at 695.491 kb on - strand, within Xcc-8004.746.1 at 695.491 kb on - strand, within Xcc-8004.746.1 at 695.491 kb on - strand, within Xcc-8004.746.1 at 695.596 kb on + strand at 695.629 kb on + strand, within Xcc-8004.747.1 at 695.629 kb on + strand, within Xcc-8004.747.1 at 695.629 kb on + strand, within Xcc-8004.747.1 at 695.629 kb on + strand, within Xcc-8004.747.1 at 695.629 kb on + strand, within Xcc-8004.747.1 at 695.630 kb on + strand, within Xcc-8004.747.1 at 695.630 kb on - strand, within Xcc-8004.747.1 at 695.630 kb on - strand, within Xcc-8004.747.1 at 695.630 kb on - strand, within Xcc-8004.747.1 at 695.630 kb on - strand, within Xcc-8004.747.1 at 695.630 kb on - strand, within Xcc-8004.747.1 at 695.630 kb on - strand, within Xcc-8004.747.1 at 695.648 kb on - strand, within Xcc-8004.747.1 at 695.648 kb on - strand, within Xcc-8004.747.1 at 695.680 kb on + strand, within Xcc-8004.747.1 at 695.680 kb on + strand, within Xcc-8004.747.1 at 695.680 kb on + strand, within Xcc-8004.747.1 at 695.680 kb on + strand, within Xcc-8004.747.1 at 695.812 kb on + strand, within Xcc-8004.747.1 at 695.812 kb on + strand, within Xcc-8004.747.1 at 695.812 kb on + strand, within Xcc-8004.747.1 at 695.812 kb on + strand, within Xcc-8004.747.1 at 695.812 kb on + strand, within Xcc-8004.747.1 at 695.812 kb on + strand, within Xcc-8004.747.1 at 695.812 kb on + strand, within Xcc-8004.747.1 at 695.812 kb on + strand, within Xcc-8004.747.1 at 695.813 kb on - strand, within Xcc-8004.747.1 at 695.813 kb on - strand, within Xcc-8004.747.1 at 695.813 kb on - strand, within Xcc-8004.747.1 at 695.813 kb on - strand, within Xcc-8004.747.1 at 695.941 kb on - strand, within Xcc-8004.747.1 at 695.941 kb on - strand, within Xcc-8004.747.1 at 696.001 kb on + strand at 696.001 kb on + strand at 696.001 kb on + strand at 696.002 kb on - strand at 696.002 kb on - strand at 696.002 kb on - strand at 696.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 693,614 + +0.9 693,872 + +0.9 693,872 + -2.4 693,938 + -1.6 693,939 - +0.9 693,955 - -1.5 693,982 + -0.4 693,982 + -0.3 693,982 + -0.3 693,983 - -0.2 693,983 - -3.3 693,983 - -2.1 694,001 + +1.4 694,002 - -0.8 694,002 - +0.1 694,058 - +0.6 694,597 - Xcc-8004.745.1 0.23 -2.8 694,632 - Xcc-8004.745.1 0.29 -0.6 694,632 - Xcc-8004.745.1 0.29 -1.3 694,703 + Xcc-8004.745.1 0.39 +0.3 694,703 + Xcc-8004.745.1 0.39 -2.6 694,704 - Xcc-8004.745.1 0.39 -1.7 695,067 + +0.5 695,067 + +0.2 695,090 - +1.9 695,235 - Xcc-8004.746.1 0.20 +0.1 695,235 - Xcc-8004.746.1 0.20 -1.3 695,405 + Xcc-8004.746.1 0.60 +1.1 695,406 - Xcc-8004.746.1 0.60 +1.0 695,490 + Xcc-8004.746.1 0.80 -0.6 695,490 + Xcc-8004.746.1 0.80 -1.9 695,490 + Xcc-8004.746.1 0.80 +0.9 695,491 - Xcc-8004.746.1 0.81 -1.3 695,491 - Xcc-8004.746.1 0.81 +0.0 695,491 - Xcc-8004.746.1 0.81 -2.2 695,491 - Xcc-8004.746.1 0.81 -0.2 695,491 - Xcc-8004.746.1 0.81 -2.3 695,596 + -2.2 695,629 + Xcc-8004.747.1 0.14 -1.2 695,629 + Xcc-8004.747.1 0.14 -0.7 695,629 + Xcc-8004.747.1 0.14 +0.6 695,629 + Xcc-8004.747.1 0.14 -2.8 695,629 + Xcc-8004.747.1 0.14 +0.7 695,630 + Xcc-8004.747.1 0.14 -2.8 695,630 - Xcc-8004.747.1 0.14 +1.0 695,630 - Xcc-8004.747.1 0.14 -1.1 695,630 - Xcc-8004.747.1 0.14 -1.7 695,630 - Xcc-8004.747.1 0.14 +0.3 695,630 - Xcc-8004.747.1 0.14 -0.2 695,630 - Xcc-8004.747.1 0.14 +0.9 695,648 - Xcc-8004.747.1 0.19 -1.5 695,648 - Xcc-8004.747.1 0.19 -0.9 695,680 + Xcc-8004.747.1 0.26 -1.2 695,680 + Xcc-8004.747.1 0.26 +0.3 695,680 + Xcc-8004.747.1 0.26 +0.5 695,680 + Xcc-8004.747.1 0.26 +1.1 695,812 + Xcc-8004.747.1 0.56 +0.1 695,812 + Xcc-8004.747.1 0.56 +0.9 695,812 + Xcc-8004.747.1 0.56 -0.1 695,812 + Xcc-8004.747.1 0.56 -1.2 695,812 + Xcc-8004.747.1 0.56 +0.9 695,812 + Xcc-8004.747.1 0.56 +0.2 695,812 + Xcc-8004.747.1 0.56 -1.5 695,812 + Xcc-8004.747.1 0.56 -0.6 695,813 - Xcc-8004.747.1 0.57 +1.5 695,813 - Xcc-8004.747.1 0.57 -3.5 695,813 - Xcc-8004.747.1 0.57 -2.9 695,813 - Xcc-8004.747.1 0.57 +0.6 695,941 - Xcc-8004.747.1 0.86 -3.0 695,941 - Xcc-8004.747.1 0.86 +0.0 696,001 + +1.5 696,001 + +0.2 696,001 + -0.6 696,002 - -0.9 696,002 - -0.6 696,002 - +1.9 696,098 - +0.1
Or see this region's nucleotide sequence