Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.673.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.672.1 and Xcc-8004.673.1 are separated by 285 nucleotidesXcc-8004.673.1 and Xcc-8004.674.1 are separated by 73 nucleotidesXcc-8004.674.1 and Xcc-8004.675.1 are separated by 1 nucleotides Xcc-8004.672.1: Xcc-8004.672.1 - FIG01211636: hypothetical protein, at 617,340 to 618,629 Xcc-8004.672.1 Xcc-8004.673.1: Xcc-8004.673.1 - Transcriptional regulator pbsX family, at 618,915 to 619,367 Xcc-8004.673.1 Xcc-8004.674.1: Xcc-8004.674.1 - FIG01211343: hypothetical protein, at 619,441 to 619,935 Xcc-8004.674.1 Xcc-8004.675.1: Xcc-8004.675.1 - Ribosomal protein L11 methyltransferase (EC 2.1.1.-), at 619,937 to 620,857 Xcc-8004.675.1 Position (kb) 618 619 620Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 618.184 kb on - strand, within Xcc-8004.672.1at 618.194 kb on + strand, within Xcc-8004.672.1at 618.194 kb on + strand, within Xcc-8004.672.1at 618.195 kb on - strand, within Xcc-8004.672.1at 618.195 kb on - strand, within Xcc-8004.672.1at 618.195 kb on - strand, within Xcc-8004.672.1at 618.204 kb on + strand, within Xcc-8004.672.1at 618.204 kb on + strand, within Xcc-8004.672.1at 618.204 kb on + strand, within Xcc-8004.672.1at 618.204 kb on + strand, within Xcc-8004.672.1at 618.204 kb on + strand, within Xcc-8004.672.1at 618.204 kb on + strand, within Xcc-8004.672.1at 618.204 kb on + strand, within Xcc-8004.672.1at 618.205 kb on - strand, within Xcc-8004.672.1at 618.205 kb on - strand, within Xcc-8004.672.1at 618.205 kb on - strand, within Xcc-8004.672.1at 618.205 kb on - strand, within Xcc-8004.672.1at 618.205 kb on - strand, within Xcc-8004.672.1at 618.205 kb on - strand, within Xcc-8004.672.1at 618.205 kb on - strand, within Xcc-8004.672.1at 618.205 kb on - strand, within Xcc-8004.672.1at 618.205 kb on - strand, within Xcc-8004.672.1at 618.205 kb on - strand, within Xcc-8004.672.1at 618.450 kb on + strand, within Xcc-8004.672.1at 618.451 kb on - strand, within Xcc-8004.672.1at 618.451 kb on - strand, within Xcc-8004.672.1at 618.451 kb on - strand, within Xcc-8004.672.1at 618.513 kb on + strandat 618.514 kb on - strandat 618.514 kb on - strandat 618.514 kb on - strandat 618.514 kb on - strandat 618.514 kb on - strandat 618.656 kb on + strandat 618.657 kb on - strandat 618.798 kb on + strandat 618.847 kb on - strandat 618.847 kb on - strandat 618.911 kb on + strandat 618.911 kb on + strandat 618.912 kb on - strandat 618.912 kb on - strandat 618.912 kb on - strandat 619.037 kb on - strand, within Xcc-8004.673.1at 619.108 kb on + strand, within Xcc-8004.673.1at 619.109 kb on - strand, within Xcc-8004.673.1at 619.109 kb on - strand, within Xcc-8004.673.1at 619.109 kb on - strand, within Xcc-8004.673.1at 619.109 kb on - strand, within Xcc-8004.673.1at 619.109 kb on - strand, within Xcc-8004.673.1at 619.269 kb on + strand, within Xcc-8004.673.1at 619.269 kb on + strand, within Xcc-8004.673.1at 619.269 kb on + strand, within Xcc-8004.673.1at 619.270 kb on - strand, within Xcc-8004.673.1at 619.270 kb on - strand, within Xcc-8004.673.1at 619.270 kb on - strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.279 kb on + strand, within Xcc-8004.673.1at 619.280 kb on - strand, within Xcc-8004.673.1at 619.280 kb on - strand, within Xcc-8004.673.1at 619.280 kb on - strand, within Xcc-8004.673.1at 619.280 kb on - strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.281 kb on + strand, within Xcc-8004.673.1at 619.282 kb on - strand, within Xcc-8004.673.1at 619.282 kb on - strand, within Xcc-8004.673.1at 619.282 kb on - strand, within Xcc-8004.673.1at 619.282 kb on - strand, within Xcc-8004.673.1at 619.325 kb on + strandat 619.325 kb on + strandat 619.325 kb on + strandat 619.325 kb on + strandat 619.325 kb on + strandat 619.325 kb on + strandat 619.325 kb on + strandat 619.326 kb on - strandat 619.326 kb on - strandat 619.326 kb on - strandat 619.326 kb on - strandat 619.326 kb on - strandat 619.326 kb on - strandat 619.327 kb on + strandat 619.327 kb on + strandat 619.327 kb on + strandat 619.327 kb on + strandat 619.327 kb on + strandat 619.328 kb on - strandat 619.328 kb on - strandat 619.328 kb on - strandat 619.328 kb on - strandat 619.349 kb on + strandat 619.349 kb on + strandat 619.350 kb on - strandat 619.350 kb on - strandat 619.350 kb on - strandat 619.356 kb on + strandat 619.357 kb on - strandat 619.357 kb on - strandat 619.357 kb on - strandat 619.357 kb on - strandat 619.386 kb on + strandat 619.514 kb on - strand, within Xcc-8004.674.1at 619.561 kb on + strand, within Xcc-8004.674.1at 619.965 kb on - strandat 619.981 kb on - strandat 619.981 kb on - strandat 619.981 kb on - strandat 620.013 kb on + strandat 620.014 kb on - strandat 620.131 kb on + strand, within Xcc-8004.675.1at 620.151 kb on + strand, within Xcc-8004.675.1at 620.151 kb on + strand, within Xcc-8004.675.1at 620.151 kb on + strand, within Xcc-8004.675.1at 620.151 kb on + strand, within Xcc-8004.675.1at 620.152 kb on - strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.181 kb on + strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.182 kb on - strand, within Xcc-8004.675.1at 620.253 kb on + strand, within Xcc-8004.675.1at 620.253 kb on + strand, within Xcc-8004.675.1at 620.253 kb on + strand, within Xcc-8004.675.1at 620.254 kb on - strand, within Xcc-8004.675.1at 620.254 kb on - strand, within Xcc-8004.675.1at 620.254 kb on - strand, within Xcc-8004.675.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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618,184 - Xcc-8004.672.1 0.65 +0.5
618,194 + Xcc-8004.672.1 0.66 -1.8
618,194 + Xcc-8004.672.1 0.66 +1.5
618,195 - Xcc-8004.672.1 0.66 -2.8
618,195 - Xcc-8004.672.1 0.66 -0.1
618,195 - Xcc-8004.672.1 0.66 +0.2
618,204 + Xcc-8004.672.1 0.67 +1.5
618,204 + Xcc-8004.672.1 0.67 -1.4
618,204 + Xcc-8004.672.1 0.67 -2.0
618,204 + Xcc-8004.672.1 0.67 +0.7
618,204 + Xcc-8004.672.1 0.67 -1.0
618,204 + Xcc-8004.672.1 0.67 -0.3
618,204 + Xcc-8004.672.1 0.67 +1.2
618,205 - Xcc-8004.672.1 0.67 +1.0
618,205 - Xcc-8004.672.1 0.67 +0.7
618,205 - Xcc-8004.672.1 0.67 +1.2
618,205 - Xcc-8004.672.1 0.67 +0.0
618,205 - Xcc-8004.672.1 0.67 +0.2
618,205 - Xcc-8004.672.1 0.67 -1.5
618,205 - Xcc-8004.672.1 0.67 +1.3
618,205 - Xcc-8004.672.1 0.67 +0.3
618,205 - Xcc-8004.672.1 0.67 +2.9
618,205 - Xcc-8004.672.1 0.67 +0.3
618,450 + Xcc-8004.672.1 0.86 -0.1
618,451 - Xcc-8004.672.1 0.86 -1.9
618,451 - Xcc-8004.672.1 0.86 +1.0
618,451 - Xcc-8004.672.1 0.86 +0.5
618,513 + +0.6
618,514 - -1.0
618,514 - +0.8
618,514 - +0.3
618,514 - +0.5
618,514 - +0.7
618,656 + +1.1
618,657 - -0.1
618,798 + -1.5
618,847 - -1.1
618,847 - +1.8
618,911 + +1.6
618,911 + +0.2
618,912 - +1.3
618,912 - +2.7
618,912 - -1.2
619,037 - Xcc-8004.673.1 0.27 +0.7
619,108 + Xcc-8004.673.1 0.43 +3.7
619,109 - Xcc-8004.673.1 0.43 +0.7
619,109 - Xcc-8004.673.1 0.43 -0.2
619,109 - Xcc-8004.673.1 0.43 -0.2
619,109 - Xcc-8004.673.1 0.43 +2.0
619,109 - Xcc-8004.673.1 0.43 -0.6
619,269 + Xcc-8004.673.1 0.78 +0.7
619,269 + Xcc-8004.673.1 0.78 +3.5
619,269 + Xcc-8004.673.1 0.78 +0.2
619,270 - Xcc-8004.673.1 0.78 -0.6
619,270 - Xcc-8004.673.1 0.78 +0.2
619,270 - Xcc-8004.673.1 0.78 -2.2
619,279 + Xcc-8004.673.1 0.80 +2.3
619,279 + Xcc-8004.673.1 0.80 +1.9
619,279 + Xcc-8004.673.1 0.80 -0.9
619,279 + Xcc-8004.673.1 0.80 +4.6
619,279 + Xcc-8004.673.1 0.80 +0.8
619,279 + Xcc-8004.673.1 0.80 +3.1
619,279 + Xcc-8004.673.1 0.80 +1.5
619,279 + Xcc-8004.673.1 0.80 +1.1
619,280 - Xcc-8004.673.1 0.81 -2.7
619,280 - Xcc-8004.673.1 0.81 -0.8
619,280 - Xcc-8004.673.1 0.81 -0.6
619,280 - Xcc-8004.673.1 0.81 +0.9
619,281 + Xcc-8004.673.1 0.81 -0.2
619,281 + Xcc-8004.673.1 0.81 +1.1
619,281 + Xcc-8004.673.1 0.81 +2.5
619,281 + Xcc-8004.673.1 0.81 +2.5
619,281 + Xcc-8004.673.1 0.81 +1.2
619,281 + Xcc-8004.673.1 0.81 +1.0
619,281 + Xcc-8004.673.1 0.81 +1.6
619,281 + Xcc-8004.673.1 0.81 +0.5
619,281 + Xcc-8004.673.1 0.81 +0.8
619,281 + Xcc-8004.673.1 0.81 +0.0
619,281 + Xcc-8004.673.1 0.81 +1.4
619,281 + Xcc-8004.673.1 0.81 +1.7
619,282 - Xcc-8004.673.1 0.81 -1.0
619,282 - Xcc-8004.673.1 0.81 +1.3
619,282 - Xcc-8004.673.1 0.81 -0.3
619,282 - Xcc-8004.673.1 0.81 -0.7
619,325 + +3.4
619,325 + +5.0
619,325 + +2.0
619,325 + +0.5
619,325 + -0.2
619,325 + +3.1
619,325 + +1.4
619,326 - +0.4
619,326 - +2.1
619,326 - -0.6
619,326 - -1.2
619,326 - -1.0
619,326 - -0.0
619,327 + +5.4
619,327 + +3.4
619,327 + +1.0
619,327 + +1.4
619,327 + +0.5
619,328 - +1.4
619,328 - +1.0
619,328 - -0.1
619,328 - -0.6
619,349 + -1.3
619,349 + +0.9
619,350 - -1.3
619,350 - +0.2
619,350 - -1.8
619,356 + +2.2
619,357 - +2.5
619,357 - +1.2
619,357 - +1.7
619,357 - +2.2
619,386 + +4.2
619,514 - Xcc-8004.674.1 0.15 +0.5
619,561 + Xcc-8004.674.1 0.24 +0.5
619,965 - +0.4
619,981 - -1.8
619,981 - -2.2
619,981 - -0.8
620,013 + +1.0
620,014 - +2.5
620,131 + Xcc-8004.675.1 0.21 -2.6
620,151 + Xcc-8004.675.1 0.23 +1.2
620,151 + Xcc-8004.675.1 0.23 -0.5
620,151 + Xcc-8004.675.1 0.23 +0.3
620,151 + Xcc-8004.675.1 0.23 -1.1
620,152 - Xcc-8004.675.1 0.23 +0.9
620,181 + Xcc-8004.675.1 0.26 +0.5
620,181 + Xcc-8004.675.1 0.26 -1.4
620,181 + Xcc-8004.675.1 0.26 -1.2
620,181 + Xcc-8004.675.1 0.26 +1.2
620,181 + Xcc-8004.675.1 0.26 -1.4
620,181 + Xcc-8004.675.1 0.26 -1.1
620,181 + Xcc-8004.675.1 0.26 +1.9
620,181 + Xcc-8004.675.1 0.26 +0.9
620,181 + Xcc-8004.675.1 0.26 -1.0
620,182 - Xcc-8004.675.1 0.27 -0.0
620,182 - Xcc-8004.675.1 0.27 -0.1
620,182 - Xcc-8004.675.1 0.27 -0.0
620,182 - Xcc-8004.675.1 0.27 -2.0
620,182 - Xcc-8004.675.1 0.27 -0.7
620,182 - Xcc-8004.675.1 0.27 -0.7
620,182 - Xcc-8004.675.1 0.27 -0.8
620,182 - Xcc-8004.675.1 0.27 -1.4
620,182 - Xcc-8004.675.1 0.27 -1.4
620,182 - Xcc-8004.675.1 0.27 +0.3
620,182 - Xcc-8004.675.1 0.27 +0.8
620,182 - Xcc-8004.675.1 0.27 +1.9
620,253 + Xcc-8004.675.1 0.34 -0.8
620,253 + Xcc-8004.675.1 0.34 +0.5
620,253 + Xcc-8004.675.1 0.34 +3.5
620,254 - Xcc-8004.675.1 0.34 +1.9
620,254 - Xcc-8004.675.1 0.34 +1.7
620,254 - Xcc-8004.675.1 0.34 +0.8

Or see this region's nucleotide sequence