Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.652.1 and Xcc-8004.653.1 are separated by 67 nucleotides Xcc-8004.653.1 and Xcc-8004.654.1 are separated by 16 nucleotides
Xcc-8004.652.1: Xcc-8004.652.1 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 593,067 to 594,989
Xcc-8004.652.1
Xcc-8004.653.1: Xcc-8004.653.1 - Transcriptional regulator, LysR family, at 595,057 to 595,959
Xcc-8004.653.1
Xcc-8004.654.1: Xcc-8004.654.1 - MFS permease protein, at 595,976 to 597,250
Xcc-8004.654.1
Position (kb) 595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 594.193 kb on + strand, within Xcc-8004.652.1 at 594.193 kb on + strand, within Xcc-8004.652.1 at 594.193 kb on + strand, within Xcc-8004.652.1 at 594.193 kb on + strand, within Xcc-8004.652.1 at 594.193 kb on + strand, within Xcc-8004.652.1 at 594.193 kb on + strand, within Xcc-8004.652.1 at 594.193 kb on + strand, within Xcc-8004.652.1 at 594.194 kb on - strand, within Xcc-8004.652.1 at 594.194 kb on - strand, within Xcc-8004.652.1 at 594.194 kb on - strand, within Xcc-8004.652.1 at 594.194 kb on - strand, within Xcc-8004.652.1 at 594.194 kb on - strand, within Xcc-8004.652.1 at 594.194 kb on - strand, within Xcc-8004.652.1 at 594.194 kb on - strand, within Xcc-8004.652.1 at 594.194 kb on - strand, within Xcc-8004.652.1 at 594.194 kb on - strand, within Xcc-8004.652.1 at 594.229 kb on + strand, within Xcc-8004.652.1 at 594.229 kb on + strand, within Xcc-8004.652.1 at 594.229 kb on + strand, within Xcc-8004.652.1 at 594.229 kb on + strand, within Xcc-8004.652.1 at 594.229 kb on + strand, within Xcc-8004.652.1 at 594.229 kb on + strand, within Xcc-8004.652.1 at 594.230 kb on - strand, within Xcc-8004.652.1 at 594.230 kb on - strand, within Xcc-8004.652.1 at 594.230 kb on - strand, within Xcc-8004.652.1 at 594.230 kb on - strand, within Xcc-8004.652.1 at 594.230 kb on - strand, within Xcc-8004.652.1 at 594.230 kb on - strand, within Xcc-8004.652.1 at 594.230 kb on - strand, within Xcc-8004.652.1 at 594.252 kb on + strand, within Xcc-8004.652.1 at 594.601 kb on + strand, within Xcc-8004.652.1 at 594.796 kb on + strand, within Xcc-8004.652.1 at 594.797 kb on - strand at 594.832 kb on + strand at 594.832 kb on + strand at 594.865 kb on + strand at 594.865 kb on + strand at 594.866 kb on - strand at 594.866 kb on - strand at 595.160 kb on + strand, within Xcc-8004.653.1 at 595.160 kb on + strand, within Xcc-8004.653.1 at 595.160 kb on + strand, within Xcc-8004.653.1 at 595.161 kb on - strand, within Xcc-8004.653.1 at 595.161 kb on - strand, within Xcc-8004.653.1 at 595.161 kb on - strand, within Xcc-8004.653.1 at 595.299 kb on - strand, within Xcc-8004.653.1 at 595.299 kb on - strand, within Xcc-8004.653.1 at 595.792 kb on + strand, within Xcc-8004.653.1 at 595.996 kb on - strand at 596.107 kb on - strand, within Xcc-8004.654.1 at 596.150 kb on + strand, within Xcc-8004.654.1 at 596.150 kb on + strand, within Xcc-8004.654.1 at 596.151 kb on - strand, within Xcc-8004.654.1 at 596.151 kb on - strand, within Xcc-8004.654.1 at 596.151 kb on - strand, within Xcc-8004.654.1 at 596.151 kb on - strand, within Xcc-8004.654.1 at 596.151 kb on - strand, within Xcc-8004.654.1 at 596.154 kb on - strand, within Xcc-8004.654.1 at 596.567 kb on + strand, within Xcc-8004.654.1 at 596.654 kb on + strand, within Xcc-8004.654.1 at 596.801 kb on + strand, within Xcc-8004.654.1 at 596.802 kb on - strand, within Xcc-8004.654.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 594,193 + Xcc-8004.652.1 0.59 +1.5 594,193 + Xcc-8004.652.1 0.59 +1.5 594,193 + Xcc-8004.652.1 0.59 +0.2 594,193 + Xcc-8004.652.1 0.59 +1.0 594,193 + Xcc-8004.652.1 0.59 +0.7 594,193 + Xcc-8004.652.1 0.59 +0.2 594,193 + Xcc-8004.652.1 0.59 +1.2 594,194 - Xcc-8004.652.1 0.59 +0.9 594,194 - Xcc-8004.652.1 0.59 -1.5 594,194 - Xcc-8004.652.1 0.59 -0.2 594,194 - Xcc-8004.652.1 0.59 +3.3 594,194 - Xcc-8004.652.1 0.59 -0.7 594,194 - Xcc-8004.652.1 0.59 -0.5 594,194 - Xcc-8004.652.1 0.59 -0.2 594,194 - Xcc-8004.652.1 0.59 -2.8 594,194 - Xcc-8004.652.1 0.59 +0.0 594,229 + Xcc-8004.652.1 0.60 -0.1 594,229 + Xcc-8004.652.1 0.60 -1.0 594,229 + Xcc-8004.652.1 0.60 +0.1 594,229 + Xcc-8004.652.1 0.60 +2.3 594,229 + Xcc-8004.652.1 0.60 +0.3 594,229 + Xcc-8004.652.1 0.60 +0.5 594,230 - Xcc-8004.652.1 0.60 -0.8 594,230 - Xcc-8004.652.1 0.60 +0.2 594,230 - Xcc-8004.652.1 0.60 -1.5 594,230 - Xcc-8004.652.1 0.60 -1.1 594,230 - Xcc-8004.652.1 0.60 -1.5 594,230 - Xcc-8004.652.1 0.60 +0.9 594,230 - Xcc-8004.652.1 0.60 +0.1 594,252 + Xcc-8004.652.1 0.62 -2.4 594,601 + Xcc-8004.652.1 0.80 -0.6 594,796 + Xcc-8004.652.1 0.90 +1.3 594,797 - -0.8 594,832 + +0.2 594,832 + -0.7 594,865 + -1.0 594,865 + +1.0 594,866 - -1.6 594,866 - +0.0 595,160 + Xcc-8004.653.1 0.11 -2.0 595,160 + Xcc-8004.653.1 0.11 +0.1 595,160 + Xcc-8004.653.1 0.11 -0.2 595,161 - Xcc-8004.653.1 0.12 -0.9 595,161 - Xcc-8004.653.1 0.12 -0.1 595,161 - Xcc-8004.653.1 0.12 +1.0 595,299 - Xcc-8004.653.1 0.27 +1.6 595,299 - Xcc-8004.653.1 0.27 -0.4 595,792 + Xcc-8004.653.1 0.81 +1.7 595,996 - -0.1 596,107 - Xcc-8004.654.1 0.10 -0.4 596,150 + Xcc-8004.654.1 0.14 +1.0 596,150 + Xcc-8004.654.1 0.14 -2.2 596,151 - Xcc-8004.654.1 0.14 +1.7 596,151 - Xcc-8004.654.1 0.14 -0.5 596,151 - Xcc-8004.654.1 0.14 +0.8 596,151 - Xcc-8004.654.1 0.14 -1.2 596,151 - Xcc-8004.654.1 0.14 +0.5 596,154 - Xcc-8004.654.1 0.14 +0.6 596,567 + Xcc-8004.654.1 0.46 -1.9 596,654 + Xcc-8004.654.1 0.53 -0.1 596,801 + Xcc-8004.654.1 0.65 -0.4 596,802 - Xcc-8004.654.1 0.65 -0.0
Or see this region's nucleotide sequence