Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.636.1 and Xcc-8004.637.1 overlap by 8 nucleotides Xcc-8004.637.1 and Xcc-8004.638.1 are separated by 223 nucleotides Xcc-8004.638.1 and Xcc-8004.639.1 are separated by 309 nucleotides
Xcc-8004.636.1: Xcc-8004.636.1 - Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-), at 580,931 to 581,548
Xcc-8004.636.1
Xcc-8004.637.1: Xcc-8004.637.1 - Bacterioferritin-associated ferredoxin, at 581,541 to 581,837
Xcc-8004.637.1
Xcc-8004.638.1: Xcc-8004.638.1 - Bacterioferritin, at 582,061 to 582,531
Xcc-8004.638.1
Xcc-8004.639.1: Xcc-8004.639.1 - FIG037127: Two-component system sensor protein, at 582,841 to 585,144
Xcc-8004.639.1
Position (kb) 582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 581.081 kb on + strand, within Xcc-8004.636.1 at 581.081 kb on + strand, within Xcc-8004.636.1 at 581.081 kb on + strand, within Xcc-8004.636.1 at 581.081 kb on + strand, within Xcc-8004.636.1 at 581.081 kb on + strand, within Xcc-8004.636.1 at 581.081 kb on + strand, within Xcc-8004.636.1 at 581.081 kb on + strand, within Xcc-8004.636.1 at 581.082 kb on - strand, within Xcc-8004.636.1 at 581.082 kb on - strand, within Xcc-8004.636.1 at 581.082 kb on - strand, within Xcc-8004.636.1 at 581.154 kb on + strand, within Xcc-8004.636.1 at 581.155 kb on - strand, within Xcc-8004.636.1 at 581.166 kb on + strand, within Xcc-8004.636.1 at 581.275 kb on + strand, within Xcc-8004.636.1 at 581.275 kb on + strand, within Xcc-8004.636.1 at 581.276 kb on - strand, within Xcc-8004.636.1 at 581.360 kb on + strand, within Xcc-8004.636.1 at 581.360 kb on + strand, within Xcc-8004.636.1 at 581.360 kb on + strand, within Xcc-8004.636.1 at 581.360 kb on + strand, within Xcc-8004.636.1 at 581.360 kb on + strand, within Xcc-8004.636.1 at 581.361 kb on - strand, within Xcc-8004.636.1 at 581.361 kb on - strand, within Xcc-8004.636.1 at 581.361 kb on - strand, within Xcc-8004.636.1 at 581.361 kb on - strand, within Xcc-8004.636.1 at 581.361 kb on - strand, within Xcc-8004.636.1 at 581.361 kb on - strand, within Xcc-8004.636.1 at 581.361 kb on - strand, within Xcc-8004.636.1 at 581.506 kb on + strand at 581.506 kb on + strand at 581.507 kb on - strand at 581.507 kb on - strand at 581.539 kb on + strand at 581.540 kb on - strand at 581.540 kb on - strand at 581.565 kb on + strand at 581.565 kb on + strand at 581.565 kb on + strand at 581.565 kb on + strand at 581.566 kb on - strand at 581.566 kb on - strand at 581.631 kb on + strand, within Xcc-8004.637.1 at 581.631 kb on + strand, within Xcc-8004.637.1 at 581.631 kb on + strand, within Xcc-8004.637.1 at 581.631 kb on + strand, within Xcc-8004.637.1 at 581.632 kb on - strand, within Xcc-8004.637.1 at 581.632 kb on - strand, within Xcc-8004.637.1 at 581.632 kb on - strand, within Xcc-8004.637.1 at 581.632 kb on - strand, within Xcc-8004.637.1 at 581.632 kb on - strand, within Xcc-8004.637.1 at 581.632 kb on - strand, within Xcc-8004.637.1 at 581.632 kb on - strand, within Xcc-8004.637.1 at 581.645 kb on + strand, within Xcc-8004.637.1 at 581.645 kb on + strand, within Xcc-8004.637.1 at 581.645 kb on + strand, within Xcc-8004.637.1 at 581.645 kb on + strand, within Xcc-8004.637.1 at 581.645 kb on + strand, within Xcc-8004.637.1 at 581.645 kb on + strand, within Xcc-8004.637.1 at 581.646 kb on - strand, within Xcc-8004.637.1 at 581.646 kb on - strand, within Xcc-8004.637.1 at 581.646 kb on - strand, within Xcc-8004.637.1 at 581.646 kb on - strand, within Xcc-8004.637.1 at 581.853 kb on + strand at 581.853 kb on + strand at 581.854 kb on - strand at 581.854 kb on - strand at 581.854 kb on - strand at 581.854 kb on - strand at 581.854 kb on - strand at 581.854 kb on - strand at 581.854 kb on - strand at 581.891 kb on + strand at 581.891 kb on + strand at 581.891 kb on + strand at 581.891 kb on + strand at 581.891 kb on + strand at 581.892 kb on - strand at 581.892 kb on - strand at 581.892 kb on - strand at 581.917 kb on + strand at 581.917 kb on + strand at 581.917 kb on + strand at 581.918 kb on - strand at 582.025 kb on + strand at 582.025 kb on + strand at 582.026 kb on - strand at 582.026 kb on - strand at 582.026 kb on - strand at 582.089 kb on - strand at 582.089 kb on - strand at 582.089 kb on - strand at 582.106 kb on + strand at 582.106 kb on + strand at 582.106 kb on + strand at 582.106 kb on + strand at 582.107 kb on - strand at 582.107 kb on - strand at 582.107 kb on - strand at 582.107 kb on - strand at 582.107 kb on - strand at 582.134 kb on - strand, within Xcc-8004.638.1 at 582.193 kb on + strand, within Xcc-8004.638.1 at 582.193 kb on + strand, within Xcc-8004.638.1 at 582.193 kb on + strand, within Xcc-8004.638.1 at 582.193 kb on + strand, within Xcc-8004.638.1 at 582.193 kb on + strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.194 kb on - strand, within Xcc-8004.638.1 at 582.379 kb on + strand, within Xcc-8004.638.1 at 582.380 kb on - strand, within Xcc-8004.638.1 at 582.400 kb on + strand, within Xcc-8004.638.1 at 582.400 kb on + strand, within Xcc-8004.638.1 at 582.400 kb on + strand, within Xcc-8004.638.1 at 582.400 kb on + strand, within Xcc-8004.638.1 at 582.400 kb on + strand, within Xcc-8004.638.1 at 582.400 kb on + strand, within Xcc-8004.638.1 at 582.400 kb on + strand, within Xcc-8004.638.1 at 582.400 kb on + strand, within Xcc-8004.638.1 at 582.400 kb on + strand, within Xcc-8004.638.1 at 582.400 kb on + strand, within Xcc-8004.638.1 at 582.400 kb on + strand, within Xcc-8004.638.1 at 582.401 kb on - strand, within Xcc-8004.638.1 at 582.401 kb on - strand, within Xcc-8004.638.1 at 582.505 kb on + strand at 582.505 kb on + strand at 582.506 kb on - strand at 582.506 kb on - strand at 582.530 kb on - strand at 582.550 kb on + strand at 582.550 kb on + strand at 582.551 kb on - strand at 582.557 kb on + strand at 582.558 kb on - strand at 582.886 kb on + strand at 582.886 kb on + strand at 582.886 kb on + strand at 582.886 kb on + strand at 582.887 kb on - strand at 582.887 kb on - strand at 582.887 kb on - strand at 582.887 kb on - strand at 582.887 kb on - strand at 582.911 kb on + strand at 582.912 kb on - strand at 582.912 kb on - strand at 582.912 kb on - strand at 583.000 kb on + strand at 583.169 kb on + strand, within Xcc-8004.639.1 at 583.169 kb on + strand, within Xcc-8004.639.1 at 583.169 kb on + strand, within Xcc-8004.639.1 at 583.169 kb on + strand, within Xcc-8004.639.1 at 583.169 kb on + strand, within Xcc-8004.639.1 at 583.170 kb on - strand, within Xcc-8004.639.1 at 583.170 kb on - strand, within Xcc-8004.639.1 at 583.170 kb on - strand, within Xcc-8004.639.1 at 583.170 kb on - strand, within Xcc-8004.639.1 at 583.349 kb on + strand, within Xcc-8004.639.1 at 583.349 kb on + strand, within Xcc-8004.639.1 at 583.349 kb on + strand, within Xcc-8004.639.1 at 583.349 kb on + strand, within Xcc-8004.639.1 at 583.349 kb on + strand, within Xcc-8004.639.1 at 583.350 kb on - strand, within Xcc-8004.639.1 at 583.350 kb on - strand, within Xcc-8004.639.1 at 583.350 kb on - strand, within Xcc-8004.639.1 at 583.350 kb on - strand, within Xcc-8004.639.1 at 583.350 kb on - strand, within Xcc-8004.639.1 at 583.350 kb on - strand, within Xcc-8004.639.1 at 583.350 kb on - strand, within Xcc-8004.639.1 at 583.350 kb on - strand, within Xcc-8004.639.1 at 583.350 kb on - strand, within Xcc-8004.639.1 at 583.478 kb on + strand, within Xcc-8004.639.1 at 583.478 kb on + strand, within Xcc-8004.639.1 at 583.479 kb on - strand, within Xcc-8004.639.1 at 583.479 kb on - strand, within Xcc-8004.639.1 at 583.479 kb on - strand, within Xcc-8004.639.1 at 583.479 kb on - strand, within Xcc-8004.639.1 at 583.523 kb on + strand, within Xcc-8004.639.1 at 583.524 kb on - strand, within Xcc-8004.639.1 at 583.524 kb on - strand, within Xcc-8004.639.1 at 583.524 kb on - strand, within Xcc-8004.639.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 581,081 + Xcc-8004.636.1 0.24 +0.9 581,081 + Xcc-8004.636.1 0.24 -1.5 581,081 + Xcc-8004.636.1 0.24 -1.1 581,081 + Xcc-8004.636.1 0.24 +0.9 581,081 + Xcc-8004.636.1 0.24 -1.0 581,081 + Xcc-8004.636.1 0.24 -0.8 581,081 + Xcc-8004.636.1 0.24 -1.5 581,082 - Xcc-8004.636.1 0.24 +0.2 581,082 - Xcc-8004.636.1 0.24 -0.9 581,082 - Xcc-8004.636.1 0.24 -0.1 581,154 + Xcc-8004.636.1 0.36 +0.4 581,155 - Xcc-8004.636.1 0.36 -1.2 581,166 + Xcc-8004.636.1 0.38 -1.7 581,275 + Xcc-8004.636.1 0.56 +1.0 581,275 + Xcc-8004.636.1 0.56 -1.5 581,276 - Xcc-8004.636.1 0.56 -0.4 581,360 + Xcc-8004.636.1 0.69 -1.4 581,360 + Xcc-8004.636.1 0.69 -2.2 581,360 + Xcc-8004.636.1 0.69 -0.7 581,360 + Xcc-8004.636.1 0.69 +2.5 581,360 + Xcc-8004.636.1 0.69 +0.6 581,361 - Xcc-8004.636.1 0.70 -2.7 581,361 - Xcc-8004.636.1 0.70 +0.0 581,361 - Xcc-8004.636.1 0.70 +0.5 581,361 - Xcc-8004.636.1 0.70 -2.2 581,361 - Xcc-8004.636.1 0.70 -2.1 581,361 - Xcc-8004.636.1 0.70 -0.4 581,361 - Xcc-8004.636.1 0.70 +0.4 581,506 + -0.5 581,506 + -0.4 581,507 - -0.8 581,507 - -2.9 581,539 + -0.2 581,540 - +1.4 581,540 - -0.6 581,565 + -0.1 581,565 + -0.4 581,565 + +2.8 581,565 + -2.8 581,566 - +0.2 581,566 - -0.5 581,631 + Xcc-8004.637.1 0.30 -0.8 581,631 + Xcc-8004.637.1 0.30 +0.3 581,631 + Xcc-8004.637.1 0.30 -1.7 581,631 + Xcc-8004.637.1 0.30 -0.7 581,632 - Xcc-8004.637.1 0.31 -1.1 581,632 - Xcc-8004.637.1 0.31 -1.0 581,632 - Xcc-8004.637.1 0.31 +0.2 581,632 - Xcc-8004.637.1 0.31 +0.5 581,632 - Xcc-8004.637.1 0.31 -2.2 581,632 - Xcc-8004.637.1 0.31 -0.4 581,632 - Xcc-8004.637.1 0.31 -0.2 581,645 + Xcc-8004.637.1 0.35 -0.3 581,645 + Xcc-8004.637.1 0.35 -0.3 581,645 + Xcc-8004.637.1 0.35 -0.2 581,645 + Xcc-8004.637.1 0.35 -0.4 581,645 + Xcc-8004.637.1 0.35 -0.1 581,645 + Xcc-8004.637.1 0.35 +1.3 581,646 - Xcc-8004.637.1 0.35 +0.5 581,646 - Xcc-8004.637.1 0.35 -2.9 581,646 - Xcc-8004.637.1 0.35 +0.3 581,646 - Xcc-8004.637.1 0.35 -0.5 581,853 + -0.1 581,853 + -0.8 581,854 - +1.8 581,854 - +0.9 581,854 - -1.5 581,854 - +0.5 581,854 - -0.4 581,854 - +1.6 581,854 - -0.1 581,891 + -0.1 581,891 + -1.6 581,891 + -0.7 581,891 + -0.7 581,891 + +1.1 581,892 - -1.0 581,892 - -1.5 581,892 - +1.2 581,917 + -0.7 581,917 + +1.0 581,917 + -1.0 581,918 - -0.0 582,025 + +1.7 582,025 + +1.8 582,026 - -0.2 582,026 - -0.5 582,026 - +0.1 582,089 - +3.5 582,089 - +1.0 582,089 - +1.5 582,106 + +1.7 582,106 + +0.9 582,106 + +1.2 582,106 + +0.6 582,107 - -2.2 582,107 - +2.0 582,107 - +1.3 582,107 - +1.4 582,107 - +1.6 582,134 - Xcc-8004.638.1 0.15 +1.1 582,193 + Xcc-8004.638.1 0.28 +2.2 582,193 + Xcc-8004.638.1 0.28 -2.5 582,193 + Xcc-8004.638.1 0.28 -0.5 582,193 + Xcc-8004.638.1 0.28 +0.8 582,193 + Xcc-8004.638.1 0.28 +1.9 582,194 - Xcc-8004.638.1 0.28 -1.0 582,194 - Xcc-8004.638.1 0.28 +0.6 582,194 - Xcc-8004.638.1 0.28 +0.6 582,194 - Xcc-8004.638.1 0.28 -0.2 582,194 - Xcc-8004.638.1 0.28 +1.7 582,194 - Xcc-8004.638.1 0.28 -2.1 582,194 - Xcc-8004.638.1 0.28 +0.7 582,194 - Xcc-8004.638.1 0.28 +0.2 582,194 - Xcc-8004.638.1 0.28 +1.2 582,194 - Xcc-8004.638.1 0.28 -1.1 582,194 - Xcc-8004.638.1 0.28 +3.1 582,194 - Xcc-8004.638.1 0.28 -2.1 582,194 - Xcc-8004.638.1 0.28 +1.1 582,194 - Xcc-8004.638.1 0.28 +2.5 582,194 - Xcc-8004.638.1 0.28 +1.6 582,194 - Xcc-8004.638.1 0.28 +1.2 582,379 + Xcc-8004.638.1 0.68 -0.3 582,380 - Xcc-8004.638.1 0.68 +1.3 582,400 + Xcc-8004.638.1 0.72 +0.8 582,400 + Xcc-8004.638.1 0.72 +1.6 582,400 + Xcc-8004.638.1 0.72 -1.0 582,400 + Xcc-8004.638.1 0.72 +1.3 582,400 + Xcc-8004.638.1 0.72 +0.6 582,400 + Xcc-8004.638.1 0.72 +0.5 582,400 + Xcc-8004.638.1 0.72 +1.3 582,400 + Xcc-8004.638.1 0.72 -0.5 582,400 + Xcc-8004.638.1 0.72 -0.9 582,400 + Xcc-8004.638.1 0.72 +3.9 582,400 + Xcc-8004.638.1 0.72 +0.1 582,401 - Xcc-8004.638.1 0.72 +0.7 582,401 - Xcc-8004.638.1 0.72 +0.5 582,505 + +1.0 582,505 + +0.5 582,506 - +1.5 582,506 - -0.8 582,530 - +1.7 582,550 + -2.2 582,550 + +0.7 582,551 - +0.9 582,557 + -3.2 582,558 - -1.0 582,886 + -1.5 582,886 + +1.3 582,886 + -0.9 582,886 + -1.5 582,887 - +2.0 582,887 - +0.1 582,887 - +0.3 582,887 - +1.1 582,887 - +2.0 582,911 + -1.1 582,912 - -0.4 582,912 - -0.4 582,912 - -1.4 583,000 + -0.1 583,169 + Xcc-8004.639.1 0.14 -2.4 583,169 + Xcc-8004.639.1 0.14 +0.7 583,169 + Xcc-8004.639.1 0.14 -1.7 583,169 + Xcc-8004.639.1 0.14 -0.1 583,169 + Xcc-8004.639.1 0.14 +0.3 583,170 - Xcc-8004.639.1 0.14 -1.9 583,170 - Xcc-8004.639.1 0.14 -0.7 583,170 - Xcc-8004.639.1 0.14 -0.9 583,170 - Xcc-8004.639.1 0.14 +0.1 583,349 + Xcc-8004.639.1 0.22 +2.1 583,349 + Xcc-8004.639.1 0.22 +1.5 583,349 + Xcc-8004.639.1 0.22 +0.5 583,349 + Xcc-8004.639.1 0.22 -0.7 583,349 + Xcc-8004.639.1 0.22 +0.4 583,350 - Xcc-8004.639.1 0.22 -0.5 583,350 - Xcc-8004.639.1 0.22 -0.6 583,350 - Xcc-8004.639.1 0.22 -1.8 583,350 - Xcc-8004.639.1 0.22 -0.2 583,350 - Xcc-8004.639.1 0.22 -1.0 583,350 - Xcc-8004.639.1 0.22 +1.7 583,350 - Xcc-8004.639.1 0.22 +1.2 583,350 - Xcc-8004.639.1 0.22 -2.8 583,350 - Xcc-8004.639.1 0.22 -1.0 583,478 + Xcc-8004.639.1 0.28 +0.8 583,478 + Xcc-8004.639.1 0.28 +0.1 583,479 - Xcc-8004.639.1 0.28 +1.5 583,479 - Xcc-8004.639.1 0.28 -1.9 583,479 - Xcc-8004.639.1 0.28 -0.7 583,479 - Xcc-8004.639.1 0.28 +0.2 583,523 + Xcc-8004.639.1 0.30 -0.2 583,524 - Xcc-8004.639.1 0.30 +1.2 583,524 - Xcc-8004.639.1 0.30 -0.0 583,524 - Xcc-8004.639.1 0.30 -0.4
Or see this region's nucleotide sequence