Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5135.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5134.1 and Xcc-8004.5135.1 are separated by 146 nucleotidesXcc-8004.5135.1 and Xcc-8004.5136.1 are separated by 341 nucleotides Xcc-8004.5134.1: Xcc-8004.5134.1 - FIG01113058: hypothetical protein, at 4,866,486 to 4,868,303 Xcc-8004.5134.1 Xcc-8004.5135.1: Xcc-8004.5135.1 - rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB, at 4,868,450 to 4,869,088 Xcc-8004.5135.1 Xcc-8004.5136.1: Xcc-8004.5136.1 - secreted alkaline phosphatase, at 4,869,430 to 4,871,022 Xcc-8004.5136.1 Position (kb) 4868 4869 4870Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4867.456 kb on + strand, within Xcc-8004.5134.1at 4867.516 kb on + strand, within Xcc-8004.5134.1at 4867.516 kb on + strand, within Xcc-8004.5134.1at 4867.516 kb on + strand, within Xcc-8004.5134.1at 4867.516 kb on + strand, within Xcc-8004.5134.1at 4867.516 kb on + strand, within Xcc-8004.5134.1at 4867.516 kb on + strand, within Xcc-8004.5134.1at 4867.516 kb on + strand, within Xcc-8004.5134.1at 4867.517 kb on - strand, within Xcc-8004.5134.1at 4867.517 kb on - strand, within Xcc-8004.5134.1at 4867.549 kb on + strand, within Xcc-8004.5134.1at 4867.549 kb on + strand, within Xcc-8004.5134.1at 4867.550 kb on - strand, within Xcc-8004.5134.1at 4867.651 kb on + strand, within Xcc-8004.5134.1at 4867.651 kb on + strand, within Xcc-8004.5134.1at 4867.651 kb on + strand, within Xcc-8004.5134.1at 4867.651 kb on + strand, within Xcc-8004.5134.1at 4867.651 kb on + strand, within Xcc-8004.5134.1at 4867.651 kb on + strand, within Xcc-8004.5134.1at 4867.652 kb on - strand, within Xcc-8004.5134.1at 4867.652 kb on - strand, within Xcc-8004.5134.1at 4867.652 kb on - strand, within Xcc-8004.5134.1at 4867.652 kb on - strand, within Xcc-8004.5134.1at 4867.652 kb on - strand, within Xcc-8004.5134.1at 4867.652 kb on - strand, within Xcc-8004.5134.1at 4867.652 kb on - strand, within Xcc-8004.5134.1at 4867.652 kb on - strand, within Xcc-8004.5134.1at 4867.652 kb on - strand, within Xcc-8004.5134.1at 4867.816 kb on + strand, within Xcc-8004.5134.1at 4867.816 kb on + strand, within Xcc-8004.5134.1at 4867.817 kb on - strand, within Xcc-8004.5134.1at 4867.817 kb on - strand, within Xcc-8004.5134.1at 4867.817 kb on - strand, within Xcc-8004.5134.1at 4867.909 kb on + strand, within Xcc-8004.5134.1at 4867.957 kb on + strand, within Xcc-8004.5134.1at 4867.957 kb on + strand, within Xcc-8004.5134.1at 4867.958 kb on - strand, within Xcc-8004.5134.1at 4867.958 kb on - strand, within Xcc-8004.5134.1at 4867.958 kb on - strand, within Xcc-8004.5134.1at 4867.958 kb on - strand, within Xcc-8004.5134.1at 4867.958 kb on - strand, within Xcc-8004.5134.1at 4867.958 kb on - strand, within Xcc-8004.5134.1at 4867.966 kb on + strand, within Xcc-8004.5134.1at 4867.966 kb on + strand, within Xcc-8004.5134.1at 4867.966 kb on + strand, within Xcc-8004.5134.1at 4867.966 kb on + strand, within Xcc-8004.5134.1at 4867.966 kb on + strand, within Xcc-8004.5134.1at 4867.966 kb on + strand, within Xcc-8004.5134.1at 4867.966 kb on + strand, within Xcc-8004.5134.1at 4867.966 kb on + strand, within Xcc-8004.5134.1at 4867.966 kb on + strand, within Xcc-8004.5134.1at 4867.966 kb on + strand, within Xcc-8004.5134.1at 4867.966 kb on + strand, within Xcc-8004.5134.1at 4867.966 kb on + strand, within Xcc-8004.5134.1at 4867.967 kb on - strand, within Xcc-8004.5134.1at 4867.967 kb on - strand, within Xcc-8004.5134.1at 4867.967 kb on - strand, within Xcc-8004.5134.1at 4867.967 kb on - strand, within Xcc-8004.5134.1at 4867.967 kb on - strand, within Xcc-8004.5134.1at 4868.161 kb on + strandat 4868.161 kb on + strandat 4868.162 kb on - strandat 4868.162 kb on - strandat 4868.162 kb on - strandat 4868.162 kb on - strandat 4868.275 kb on + strandat 4868.641 kb on + strand, within Xcc-8004.5135.1at 4868.642 kb on - strand, within Xcc-8004.5135.1at 4868.880 kb on + strand, within Xcc-8004.5135.1at 4868.880 kb on + strand, within Xcc-8004.5135.1at 4868.880 kb on + strand, within Xcc-8004.5135.1at 4868.880 kb on + strand, within Xcc-8004.5135.1at 4868.880 kb on + strand, within Xcc-8004.5135.1at 4868.880 kb on + strand, within Xcc-8004.5135.1at 4868.881 kb on - strand, within Xcc-8004.5135.1at 4868.881 kb on - strand, within Xcc-8004.5135.1at 4868.881 kb on - strand, within Xcc-8004.5135.1at 4868.955 kb on + strand, within Xcc-8004.5135.1at 4868.956 kb on - strand, within Xcc-8004.5135.1at 4868.956 kb on - strand, within Xcc-8004.5135.1at 4868.956 kb on - strand, within Xcc-8004.5135.1at 4868.956 kb on - strand, within Xcc-8004.5135.1at 4868.956 kb on - strand, within Xcc-8004.5135.1at 4868.988 kb on + strand, within Xcc-8004.5135.1at 4868.989 kb on - strand, within Xcc-8004.5135.1at 4868.989 kb on - strand, within Xcc-8004.5135.1at 4869.188 kb on + strandat 4869.188 kb on + strandat 4869.189 kb on - strandat 4869.189 kb on - strandat 4869.189 kb on - strandat 4869.189 kb on - strandat 4869.238 kb on + strandat 4869.238 kb on + strandat 4869.238 kb on + strandat 4869.238 kb on + strandat 4869.239 kb on - strandat 4869.391 kb on + strandat 4869.391 kb on + strandat 4869.392 kb on - strandat 4869.392 kb on - strandat 4869.760 kb on + strand, within Xcc-8004.5136.1at 4869.925 kb on + strand, within Xcc-8004.5136.1at 4869.925 kb on + strand, within Xcc-8004.5136.1at 4869.925 kb on + strand, within Xcc-8004.5136.1at 4869.925 kb on + strand, within Xcc-8004.5136.1at 4869.925 kb on + strand, within Xcc-8004.5136.1at 4869.925 kb on + strand, within Xcc-8004.5136.1at 4869.926 kb on - strand, within Xcc-8004.5136.1at 4869.982 kb on + strand, within Xcc-8004.5136.1at 4869.982 kb on + strand, within Xcc-8004.5136.1at 4869.982 kb on + strand, within Xcc-8004.5136.1at 4869.982 kb on + strand, within Xcc-8004.5136.1at 4869.982 kb on + strand, within Xcc-8004.5136.1at 4869.983 kb on - strand, within Xcc-8004.5136.1at 4869.983 kb on - strand, within Xcc-8004.5136.1at 4869.983 kb on - strand, within Xcc-8004.5136.1at 4869.983 kb on - strand, within Xcc-8004.5136.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,867,456 + Xcc-8004.5134.1 0.53 +0.1
4,867,516 + Xcc-8004.5134.1 0.57 -2.0
4,867,516 + Xcc-8004.5134.1 0.57 +0.1
4,867,516 + Xcc-8004.5134.1 0.57 -1.3
4,867,516 + Xcc-8004.5134.1 0.57 -1.2
4,867,516 + Xcc-8004.5134.1 0.57 +0.5
4,867,516 + Xcc-8004.5134.1 0.57 +0.9
4,867,516 + Xcc-8004.5134.1 0.57 -0.3
4,867,517 - Xcc-8004.5134.1 0.57 +1.9
4,867,517 - Xcc-8004.5134.1 0.57 +0.7
4,867,549 + Xcc-8004.5134.1 0.58 -1.2
4,867,549 + Xcc-8004.5134.1 0.58 -0.4
4,867,550 - Xcc-8004.5134.1 0.59 -0.2
4,867,651 + Xcc-8004.5134.1 0.64 -0.3
4,867,651 + Xcc-8004.5134.1 0.64 +1.2
4,867,651 + Xcc-8004.5134.1 0.64 -2.1
4,867,651 + Xcc-8004.5134.1 0.64 +0.8
4,867,651 + Xcc-8004.5134.1 0.64 -0.8
4,867,651 + Xcc-8004.5134.1 0.64 -2.6
4,867,652 - Xcc-8004.5134.1 0.64 -0.5
4,867,652 - Xcc-8004.5134.1 0.64 -0.3
4,867,652 - Xcc-8004.5134.1 0.64 +0.0
4,867,652 - Xcc-8004.5134.1 0.64 +1.5
4,867,652 - Xcc-8004.5134.1 0.64 -3.1
4,867,652 - Xcc-8004.5134.1 0.64 -0.3
4,867,652 - Xcc-8004.5134.1 0.64 +0.6
4,867,652 - Xcc-8004.5134.1 0.64 +0.5
4,867,652 - Xcc-8004.5134.1 0.64 +0.0
4,867,816 + Xcc-8004.5134.1 0.73 +0.8
4,867,816 + Xcc-8004.5134.1 0.73 +0.6
4,867,817 - Xcc-8004.5134.1 0.73 -0.2
4,867,817 - Xcc-8004.5134.1 0.73 +1.4
4,867,817 - Xcc-8004.5134.1 0.73 -0.0
4,867,909 + Xcc-8004.5134.1 0.78 -1.8
4,867,957 + Xcc-8004.5134.1 0.81 -0.1
4,867,957 + Xcc-8004.5134.1 0.81 -0.3
4,867,958 - Xcc-8004.5134.1 0.81 +1.1
4,867,958 - Xcc-8004.5134.1 0.81 -1.8
4,867,958 - Xcc-8004.5134.1 0.81 -1.7
4,867,958 - Xcc-8004.5134.1 0.81 -0.3
4,867,958 - Xcc-8004.5134.1 0.81 -1.9
4,867,958 - Xcc-8004.5134.1 0.81 +0.7
4,867,966 + Xcc-8004.5134.1 0.81 +1.3
4,867,966 + Xcc-8004.5134.1 0.81 +1.2
4,867,966 + Xcc-8004.5134.1 0.81 +0.5
4,867,966 + Xcc-8004.5134.1 0.81 +0.1
4,867,966 + Xcc-8004.5134.1 0.81 +1.3
4,867,966 + Xcc-8004.5134.1 0.81 +0.7
4,867,966 + Xcc-8004.5134.1 0.81 -0.2
4,867,966 + Xcc-8004.5134.1 0.81 +0.5
4,867,966 + Xcc-8004.5134.1 0.81 -1.8
4,867,966 + Xcc-8004.5134.1 0.81 -2.1
4,867,966 + Xcc-8004.5134.1 0.81 -2.1
4,867,966 + Xcc-8004.5134.1 0.81 -1.7
4,867,967 - Xcc-8004.5134.1 0.81 +0.2
4,867,967 - Xcc-8004.5134.1 0.81 -0.1
4,867,967 - Xcc-8004.5134.1 0.81 -2.2
4,867,967 - Xcc-8004.5134.1 0.81 -1.9
4,867,967 - Xcc-8004.5134.1 0.81 -0.5
4,868,161 + -2.4
4,868,161 + -0.1
4,868,162 - -1.2
4,868,162 - +0.6
4,868,162 - +1.4
4,868,162 - -1.0
4,868,275 + +0.7
4,868,641 + Xcc-8004.5135.1 0.30 +2.2
4,868,642 - Xcc-8004.5135.1 0.30 +1.3
4,868,880 + Xcc-8004.5135.1 0.67 -1.4
4,868,880 + Xcc-8004.5135.1 0.67 +1.5
4,868,880 + Xcc-8004.5135.1 0.67 +0.9
4,868,880 + Xcc-8004.5135.1 0.67 +1.7
4,868,880 + Xcc-8004.5135.1 0.67 +0.4
4,868,880 + Xcc-8004.5135.1 0.67 -0.4
4,868,881 - Xcc-8004.5135.1 0.67 +1.4
4,868,881 - Xcc-8004.5135.1 0.67 +1.6
4,868,881 - Xcc-8004.5135.1 0.67 -0.4
4,868,955 + Xcc-8004.5135.1 0.79 -0.8
4,868,956 - Xcc-8004.5135.1 0.79 -0.1
4,868,956 - Xcc-8004.5135.1 0.79 +0.7
4,868,956 - Xcc-8004.5135.1 0.79 +2.5
4,868,956 - Xcc-8004.5135.1 0.79 -0.8
4,868,956 - Xcc-8004.5135.1 0.79 +0.4
4,868,988 + Xcc-8004.5135.1 0.84 +0.9
4,868,989 - Xcc-8004.5135.1 0.84 -0.3
4,868,989 - Xcc-8004.5135.1 0.84 +2.9
4,869,188 + +1.2
4,869,188 + -0.2
4,869,189 - +1.5
4,869,189 - +3.1
4,869,189 - +1.2
4,869,189 - +1.5
4,869,238 + +1.0
4,869,238 + -0.0
4,869,238 + +1.0
4,869,238 + +0.9
4,869,239 - -0.5
4,869,391 + -0.1
4,869,391 + +1.4
4,869,392 - -1.0
4,869,392 - -1.0
4,869,760 + Xcc-8004.5136.1 0.21 +1.1
4,869,925 + Xcc-8004.5136.1 0.31 +2.4
4,869,925 + Xcc-8004.5136.1 0.31 -0.7
4,869,925 + Xcc-8004.5136.1 0.31 +2.3
4,869,925 + Xcc-8004.5136.1 0.31 +0.6
4,869,925 + Xcc-8004.5136.1 0.31 -0.2
4,869,925 + Xcc-8004.5136.1 0.31 -0.5
4,869,926 - Xcc-8004.5136.1 0.31 -0.4
4,869,982 + Xcc-8004.5136.1 0.35 -0.7
4,869,982 + Xcc-8004.5136.1 0.35 +1.0
4,869,982 + Xcc-8004.5136.1 0.35 -1.6
4,869,982 + Xcc-8004.5136.1 0.35 +0.3
4,869,982 + Xcc-8004.5136.1 0.35 +1.1
4,869,983 - Xcc-8004.5136.1 0.35 -2.1
4,869,983 - Xcc-8004.5136.1 0.35 +0.1
4,869,983 - Xcc-8004.5136.1 0.35 -1.7
4,869,983 - Xcc-8004.5136.1 0.35 +3.2

Or see this region's nucleotide sequence