Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5100.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5098.1 and Xcc-8004.5099.1 overlap by 4 nucleotidesXcc-8004.5099.1 and Xcc-8004.5100.1 overlap by 4 nucleotidesXcc-8004.5100.1 and Xcc-8004.5101.1 are separated by 301 nucleotides Xcc-8004.5098.1: Xcc-8004.5098.1 - hypothetical protein, at 4,836,789 to 4,836,881 Xcc-8004.5098.1 Xcc-8004.5099.1: Xcc-8004.5099.1 - FIG01209960: hypothetical protein, at 4,836,878 to 4,837,795 Xcc-8004.5099.1 Xcc-8004.5100.1: Xcc-8004.5100.1 - FIG01211066: hypothetical protein, at 4,837,792 to 4,838,361 Xcc-8004.5100.1 Xcc-8004.5101.1: Xcc-8004.5101.1 - Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3), at 4,838,663 to 4,839,562 Xcc-8004.5101.1 Position (kb) 4837 4838 4839Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4836.816 kb on + strand, within Xcc-8004.5098.1at 4836.816 kb on + strand, within Xcc-8004.5098.1at 4836.816 kb on + strand, within Xcc-8004.5098.1at 4836.816 kb on + strand, within Xcc-8004.5098.1at 4836.817 kb on - strand, within Xcc-8004.5098.1at 4836.893 kb on + strandat 4836.893 kb on + strandat 4836.893 kb on + strandat 4836.893 kb on + strandat 4836.893 kb on + strandat 4836.893 kb on + strandat 4836.894 kb on - strandat 4836.894 kb on - strandat 4836.949 kb on + strandat 4836.950 kb on - strandat 4836.950 kb on - strandat 4836.950 kb on - strandat 4836.950 kb on - strandat 4836.950 kb on - strandat 4836.950 kb on - strandat 4836.963 kb on + strandat 4836.963 kb on + strandat 4836.963 kb on + strandat 4836.963 kb on + strandat 4836.964 kb on - strandat 4836.964 kb on - strandat 4836.998 kb on + strand, within Xcc-8004.5099.1at 4836.998 kb on + strand, within Xcc-8004.5099.1at 4836.998 kb on + strand, within Xcc-8004.5099.1at 4836.998 kb on + strand, within Xcc-8004.5099.1at 4836.998 kb on + strand, within Xcc-8004.5099.1at 4836.998 kb on + strand, within Xcc-8004.5099.1at 4836.998 kb on + strand, within Xcc-8004.5099.1at 4836.998 kb on + strand, within Xcc-8004.5099.1at 4836.999 kb on - strand, within Xcc-8004.5099.1at 4836.999 kb on - strand, within Xcc-8004.5099.1at 4836.999 kb on - strand, within Xcc-8004.5099.1at 4836.999 kb on - strand, within Xcc-8004.5099.1at 4836.999 kb on - strand, within Xcc-8004.5099.1at 4836.999 kb on - strand, within Xcc-8004.5099.1at 4837.077 kb on + strand, within Xcc-8004.5099.1at 4837.077 kb on + strand, within Xcc-8004.5099.1at 4837.077 kb on + strand, within Xcc-8004.5099.1at 4837.078 kb on - strand, within Xcc-8004.5099.1at 4837.078 kb on - strand, within Xcc-8004.5099.1at 4837.078 kb on - strand, within Xcc-8004.5099.1at 4837.253 kb on + strand, within Xcc-8004.5099.1at 4837.253 kb on + strand, within Xcc-8004.5099.1at 4837.253 kb on + strand, within Xcc-8004.5099.1at 4837.253 kb on + strand, within Xcc-8004.5099.1at 4837.254 kb on - strand, within Xcc-8004.5099.1at 4837.254 kb on - strand, within Xcc-8004.5099.1at 4837.254 kb on - strand, within Xcc-8004.5099.1at 4837.254 kb on - strand, within Xcc-8004.5099.1at 4837.254 kb on - strand, within Xcc-8004.5099.1at 4837.254 kb on - strand, within Xcc-8004.5099.1at 4837.334 kb on + strand, within Xcc-8004.5099.1at 4837.514 kb on - strand, within Xcc-8004.5099.1at 4837.592 kb on + strand, within Xcc-8004.5099.1at 4837.592 kb on + strand, within Xcc-8004.5099.1at 4837.593 kb on - strand, within Xcc-8004.5099.1at 4837.593 kb on - strand, within Xcc-8004.5099.1at 4837.593 kb on - strand, within Xcc-8004.5099.1at 4837.593 kb on - strand, within Xcc-8004.5099.1at 4837.722 kb on - strandat 4837.722 kb on - strandat 4837.722 kb on - strandat 4837.722 kb on - strandat 4837.722 kb on - strandat 4837.722 kb on - strandat 4837.722 kb on - strandat 4838.119 kb on - strand, within Xcc-8004.5100.1at 4838.119 kb on - strand, within Xcc-8004.5100.1at 4838.119 kb on - strand, within Xcc-8004.5100.1at 4838.141 kb on + strand, within Xcc-8004.5100.1at 4838.651 kb on + strandat 4838.651 kb on + strandat 4838.652 kb on - strandat 4838.652 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,836,816 + Xcc-8004.5098.1 0.29 -0.6
4,836,816 + Xcc-8004.5098.1 0.29 -0.2
4,836,816 + Xcc-8004.5098.1 0.29 -1.3
4,836,816 + Xcc-8004.5098.1 0.29 -1.2
4,836,817 - Xcc-8004.5098.1 0.30 +1.3
4,836,893 + -1.3
4,836,893 + +0.5
4,836,893 + -0.3
4,836,893 + -0.7
4,836,893 + -0.9
4,836,893 + -1.3
4,836,894 - +0.5
4,836,894 - -0.3
4,836,949 + -0.0
4,836,950 - +0.9
4,836,950 - +0.0
4,836,950 - -1.2
4,836,950 - -1.4
4,836,950 - -0.4
4,836,950 - -1.0
4,836,963 + +0.9
4,836,963 + +0.1
4,836,963 + -1.6
4,836,963 + +0.4
4,836,964 - +0.1
4,836,964 - +2.2
4,836,998 + Xcc-8004.5099.1 0.13 -1.8
4,836,998 + Xcc-8004.5099.1 0.13 -0.8
4,836,998 + Xcc-8004.5099.1 0.13 +0.1
4,836,998 + Xcc-8004.5099.1 0.13 +1.0
4,836,998 + Xcc-8004.5099.1 0.13 -1.0
4,836,998 + Xcc-8004.5099.1 0.13 -0.6
4,836,998 + Xcc-8004.5099.1 0.13 +0.9
4,836,998 + Xcc-8004.5099.1 0.13 +1.8
4,836,999 - Xcc-8004.5099.1 0.13 +0.1
4,836,999 - Xcc-8004.5099.1 0.13 -1.3
4,836,999 - Xcc-8004.5099.1 0.13 +0.0
4,836,999 - Xcc-8004.5099.1 0.13 +0.3
4,836,999 - Xcc-8004.5099.1 0.13 +0.1
4,836,999 - Xcc-8004.5099.1 0.13 +1.6
4,837,077 + Xcc-8004.5099.1 0.22 +2.0
4,837,077 + Xcc-8004.5099.1 0.22 +0.8
4,837,077 + Xcc-8004.5099.1 0.22 -1.9
4,837,078 - Xcc-8004.5099.1 0.22 +1.1
4,837,078 - Xcc-8004.5099.1 0.22 -0.2
4,837,078 - Xcc-8004.5099.1 0.22 +0.6
4,837,253 + Xcc-8004.5099.1 0.41 -0.2
4,837,253 + Xcc-8004.5099.1 0.41 +0.2
4,837,253 + Xcc-8004.5099.1 0.41 -2.4
4,837,253 + Xcc-8004.5099.1 0.41 -1.1
4,837,254 - Xcc-8004.5099.1 0.41 +0.2
4,837,254 - Xcc-8004.5099.1 0.41 +2.5
4,837,254 - Xcc-8004.5099.1 0.41 -1.0
4,837,254 - Xcc-8004.5099.1 0.41 +0.5
4,837,254 - Xcc-8004.5099.1 0.41 +0.5
4,837,254 - Xcc-8004.5099.1 0.41 -0.5
4,837,334 + Xcc-8004.5099.1 0.50 +0.3
4,837,514 - Xcc-8004.5099.1 0.69 -1.0
4,837,592 + Xcc-8004.5099.1 0.78 -1.3
4,837,592 + Xcc-8004.5099.1 0.78 -2.0
4,837,593 - Xcc-8004.5099.1 0.78 +0.6
4,837,593 - Xcc-8004.5099.1 0.78 +1.5
4,837,593 - Xcc-8004.5099.1 0.78 +2.8
4,837,593 - Xcc-8004.5099.1 0.78 +0.3
4,837,722 - +2.2
4,837,722 - +1.4
4,837,722 - +1.5
4,837,722 - -2.0
4,837,722 - -0.4
4,837,722 - -0.7
4,837,722 - -1.7
4,838,119 - Xcc-8004.5100.1 0.57 -3.1
4,838,119 - Xcc-8004.5100.1 0.57 +0.2
4,838,119 - Xcc-8004.5100.1 0.57 -0.5
4,838,141 + Xcc-8004.5100.1 0.61 +2.0
4,838,651 + +0.3
4,838,651 + -1.0
4,838,652 - +1.4
4,838,652 - +1.0

Or see this region's nucleotide sequence