Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5047.1 and Xcc-8004.5048.1 overlap by 4 nucleotides Xcc-8004.5048.1 and Xcc-8004.5049.1 overlap by 1 nucleotides Xcc-8004.5049.1 and Xcc-8004.5051.1 are separated by 115 nucleotides
Xcc-8004.5047.1: Xcc-8004.5047.1 - ABC-type multidrug transport system, ATPase component, at 4,786,873 to 4,787,871
Xcc-8004.5047.1
Xcc-8004.5048.1: Xcc-8004.5048.1 - permease, at 4,787,868 to 4,788,680
Xcc-8004.5048.1
Xcc-8004.5049.1: Xcc-8004.5049.1 - FIG01211140: hypothetical protein, at 4,788,680 to 4,789,432
Xcc-8004.5049.1
Xcc-8004.5051.1: Xcc-8004.5051.1 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 4,789,548 to 4,790,486
Xcc-8004.5051.1
Position (kb) 4788
4789
4790 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4788.021 kb on + strand, within Xcc-8004.5048.1 at 4788.021 kb on + strand, within Xcc-8004.5048.1 at 4788.081 kb on + strand, within Xcc-8004.5048.1 at 4788.081 kb on + strand, within Xcc-8004.5048.1 at 4788.081 kb on + strand, within Xcc-8004.5048.1 at 4788.082 kb on - strand, within Xcc-8004.5048.1 at 4788.082 kb on - strand, within Xcc-8004.5048.1 at 4788.082 kb on - strand, within Xcc-8004.5048.1 at 4788.082 kb on - strand, within Xcc-8004.5048.1 at 4788.234 kb on + strand, within Xcc-8004.5048.1 at 4788.234 kb on + strand, within Xcc-8004.5048.1 at 4788.234 kb on + strand, within Xcc-8004.5048.1 at 4788.397 kb on - strand, within Xcc-8004.5048.1 at 4788.456 kb on + strand, within Xcc-8004.5048.1 at 4788.457 kb on - strand, within Xcc-8004.5048.1 at 4788.474 kb on + strand, within Xcc-8004.5048.1 at 4788.474 kb on + strand, within Xcc-8004.5048.1 at 4788.475 kb on - strand, within Xcc-8004.5048.1 at 4788.534 kb on + strand, within Xcc-8004.5048.1 at 4788.534 kb on + strand, within Xcc-8004.5048.1 at 4788.534 kb on + strand, within Xcc-8004.5048.1 at 4788.534 kb on + strand, within Xcc-8004.5048.1 at 4788.535 kb on - strand, within Xcc-8004.5048.1 at 4788.597 kb on + strand, within Xcc-8004.5048.1 at 4788.598 kb on - strand, within Xcc-8004.5048.1 at 4788.644 kb on - strand at 4788.698 kb on + strand at 4788.698 kb on + strand at 4788.698 kb on + strand at 4788.699 kb on - strand at 4788.800 kb on + strand, within Xcc-8004.5049.1 at 4788.801 kb on - strand, within Xcc-8004.5049.1 at 4788.801 kb on - strand, within Xcc-8004.5049.1 at 4789.082 kb on + strand, within Xcc-8004.5049.1 at 4789.082 kb on + strand, within Xcc-8004.5049.1 at 4789.083 kb on - strand, within Xcc-8004.5049.1 at 4789.085 kb on + strand, within Xcc-8004.5049.1 at 4789.085 kb on + strand, within Xcc-8004.5049.1 at 4789.085 kb on + strand, within Xcc-8004.5049.1 at 4789.085 kb on + strand, within Xcc-8004.5049.1 at 4789.086 kb on - strand, within Xcc-8004.5049.1 at 4789.230 kb on + strand, within Xcc-8004.5049.1 at 4789.230 kb on + strand, within Xcc-8004.5049.1 at 4789.231 kb on - strand, within Xcc-8004.5049.1 at 4789.231 kb on - strand, within Xcc-8004.5049.1 at 4789.231 kb on - strand, within Xcc-8004.5049.1 at 4789.231 kb on - strand, within Xcc-8004.5049.1 at 4789.285 kb on - strand, within Xcc-8004.5049.1 at 4789.285 kb on - strand, within Xcc-8004.5049.1 at 4789.547 kb on + strand at 4789.548 kb on - strand at 4789.548 kb on - strand at 4789.548 kb on - strand at 4789.588 kb on - strand at 4789.588 kb on - strand at 4789.794 kb on + strand, within Xcc-8004.5051.1 at 4789.881 kb on + strand, within Xcc-8004.5051.1 at 4790.121 kb on + strand, within Xcc-8004.5051.1 at 4790.122 kb on - strand, within Xcc-8004.5051.1 at 4790.122 kb on - strand, within Xcc-8004.5051.1 at 4790.224 kb on - strand, within Xcc-8004.5051.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 4,788,021 + Xcc-8004.5048.1 0.19 -0.5 4,788,021 + Xcc-8004.5048.1 0.19 +0.4 4,788,081 + Xcc-8004.5048.1 0.26 +1.5 4,788,081 + Xcc-8004.5048.1 0.26 +1.6 4,788,081 + Xcc-8004.5048.1 0.26 +0.1 4,788,082 - Xcc-8004.5048.1 0.26 +1.1 4,788,082 - Xcc-8004.5048.1 0.26 -0.2 4,788,082 - Xcc-8004.5048.1 0.26 +0.5 4,788,082 - Xcc-8004.5048.1 0.26 -1.0 4,788,234 + Xcc-8004.5048.1 0.45 +0.1 4,788,234 + Xcc-8004.5048.1 0.45 -1.2 4,788,234 + Xcc-8004.5048.1 0.45 +1.8 4,788,397 - Xcc-8004.5048.1 0.65 -0.3 4,788,456 + Xcc-8004.5048.1 0.72 +0.5 4,788,457 - Xcc-8004.5048.1 0.72 +0.2 4,788,474 + Xcc-8004.5048.1 0.75 -0.7 4,788,474 + Xcc-8004.5048.1 0.75 +1.0 4,788,475 - Xcc-8004.5048.1 0.75 -2.7 4,788,534 + Xcc-8004.5048.1 0.82 -1.7 4,788,534 + Xcc-8004.5048.1 0.82 -0.1 4,788,534 + Xcc-8004.5048.1 0.82 -0.2 4,788,534 + Xcc-8004.5048.1 0.82 +0.1 4,788,535 - Xcc-8004.5048.1 0.82 -2.5 4,788,597 + Xcc-8004.5048.1 0.90 +0.5 4,788,598 - Xcc-8004.5048.1 0.90 -1.9 4,788,644 - +1.5 4,788,698 + +0.9 4,788,698 + -0.5 4,788,698 + -1.3 4,788,699 - +1.0 4,788,800 + Xcc-8004.5049.1 0.16 -1.6 4,788,801 - Xcc-8004.5049.1 0.16 -0.9 4,788,801 - Xcc-8004.5049.1 0.16 -1.8 4,789,082 + Xcc-8004.5049.1 0.53 +1.1 4,789,082 + Xcc-8004.5049.1 0.53 -0.3 4,789,083 - Xcc-8004.5049.1 0.54 +0.5 4,789,085 + Xcc-8004.5049.1 0.54 -1.3 4,789,085 + Xcc-8004.5049.1 0.54 +2.5 4,789,085 + Xcc-8004.5049.1 0.54 +1.2 4,789,085 + Xcc-8004.5049.1 0.54 +0.9 4,789,086 - Xcc-8004.5049.1 0.54 +0.5 4,789,230 + Xcc-8004.5049.1 0.73 +1.3 4,789,230 + Xcc-8004.5049.1 0.73 +0.1 4,789,231 - Xcc-8004.5049.1 0.73 +0.4 4,789,231 - Xcc-8004.5049.1 0.73 +0.1 4,789,231 - Xcc-8004.5049.1 0.73 +0.9 4,789,231 - Xcc-8004.5049.1 0.73 +0.5 4,789,285 - Xcc-8004.5049.1 0.80 +1.9 4,789,285 - Xcc-8004.5049.1 0.80 +0.0 4,789,547 + +1.2 4,789,548 - +1.5 4,789,548 - +0.3 4,789,548 - -1.4 4,789,588 - +0.2 4,789,588 - -0.5 4,789,794 + Xcc-8004.5051.1 0.26 +0.1 4,789,881 + Xcc-8004.5051.1 0.35 +2.3 4,790,121 + Xcc-8004.5051.1 0.61 -0.0 4,790,122 - Xcc-8004.5051.1 0.61 +0.6 4,790,122 - Xcc-8004.5051.1 0.61 -0.6 4,790,224 - Xcc-8004.5051.1 0.72 +0.3
Or see this region's nucleotide sequence