Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5046.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5045.1 and Xcc-8004.5046.1 are separated by 71 nucleotidesXcc-8004.5046.1 and Xcc-8004.5047.1 are separated by 100 nucleotides Xcc-8004.5045.1: Xcc-8004.5045.1 - Beta-xylosidase (EC 3.2.1.37), at 4,784,368 to 4,785,933 Xcc-8004.5045.1 Xcc-8004.5046.1: Xcc-8004.5046.1 - Phenol hydroxylase, at 4,786,005 to 4,786,772 Xcc-8004.5046.1 Xcc-8004.5047.1: Xcc-8004.5047.1 - ABC-type multidrug transport system, ATPase component, at 4,786,873 to 4,787,871 Xcc-8004.5047.1 Position (kb) 4786 4787Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 4785.084 kb on - strand, within Xcc-8004.5045.1at 4785.084 kb on - strand, within Xcc-8004.5045.1at 4785.084 kb on - strand, within Xcc-8004.5045.1at 4785.112 kb on + strand, within Xcc-8004.5045.1at 4785.112 kb on + strand, within Xcc-8004.5045.1at 4785.113 kb on - strand, within Xcc-8004.5045.1at 4785.113 kb on - strand, within Xcc-8004.5045.1at 4785.113 kb on - strand, within Xcc-8004.5045.1at 4785.119 kb on + strand, within Xcc-8004.5045.1at 4785.119 kb on + strand, within Xcc-8004.5045.1at 4785.119 kb on + strand, within Xcc-8004.5045.1at 4785.119 kb on + strand, within Xcc-8004.5045.1at 4785.119 kb on + strand, within Xcc-8004.5045.1at 4785.120 kb on - strand, within Xcc-8004.5045.1at 4785.120 kb on - strand, within Xcc-8004.5045.1at 4785.120 kb on - strand, within Xcc-8004.5045.1at 4785.120 kb on - strand, within Xcc-8004.5045.1at 4785.120 kb on - strand, within Xcc-8004.5045.1at 4785.274 kb on + strand, within Xcc-8004.5045.1at 4785.275 kb on - strand, within Xcc-8004.5045.1at 4785.275 kb on - strand, within Xcc-8004.5045.1at 4785.304 kb on + strand, within Xcc-8004.5045.1at 4785.304 kb on + strand, within Xcc-8004.5045.1at 4785.304 kb on + strand, within Xcc-8004.5045.1at 4785.304 kb on + strand, within Xcc-8004.5045.1at 4785.304 kb on + strand, within Xcc-8004.5045.1at 4785.304 kb on + strand, within Xcc-8004.5045.1at 4785.304 kb on + strand, within Xcc-8004.5045.1at 4785.304 kb on + strand, within Xcc-8004.5045.1at 4785.304 kb on + strand, within Xcc-8004.5045.1at 4785.305 kb on - strand, within Xcc-8004.5045.1at 4785.305 kb on - strand, within Xcc-8004.5045.1at 4785.370 kb on + strand, within Xcc-8004.5045.1at 4785.371 kb on - strand, within Xcc-8004.5045.1at 4785.379 kb on + strand, within Xcc-8004.5045.1at 4785.379 kb on + strand, within Xcc-8004.5045.1at 4785.379 kb on + strand, within Xcc-8004.5045.1at 4785.379 kb on + strand, within Xcc-8004.5045.1at 4785.379 kb on + strand, within Xcc-8004.5045.1at 4785.379 kb on + strand, within Xcc-8004.5045.1at 4785.379 kb on + strand, within Xcc-8004.5045.1at 4785.380 kb on - strand, within Xcc-8004.5045.1at 4785.380 kb on - strand, within Xcc-8004.5045.1at 4785.380 kb on - strand, within Xcc-8004.5045.1at 4785.481 kb on + strand, within Xcc-8004.5045.1at 4785.481 kb on + strand, within Xcc-8004.5045.1at 4785.481 kb on + strand, within Xcc-8004.5045.1at 4785.481 kb on + strand, within Xcc-8004.5045.1at 4785.481 kb on + strand, within Xcc-8004.5045.1at 4785.482 kb on - strand, within Xcc-8004.5045.1at 4785.482 kb on - strand, within Xcc-8004.5045.1at 4785.482 kb on - strand, within Xcc-8004.5045.1at 4785.482 kb on - strand, within Xcc-8004.5045.1at 4785.487 kb on + strand, within Xcc-8004.5045.1at 4785.487 kb on + strand, within Xcc-8004.5045.1at 4785.487 kb on + strand, within Xcc-8004.5045.1at 4785.488 kb on - strand, within Xcc-8004.5045.1at 4785.488 kb on - strand, within Xcc-8004.5045.1at 4785.488 kb on - strand, within Xcc-8004.5045.1at 4785.612 kb on + strand, within Xcc-8004.5045.1at 4785.622 kb on + strand, within Xcc-8004.5045.1at 4785.622 kb on + strand, within Xcc-8004.5045.1at 4785.623 kb on - strand, within Xcc-8004.5045.1at 4785.695 kb on - strand, within Xcc-8004.5045.1at 4785.695 kb on - strand, within Xcc-8004.5045.1at 4785.748 kb on + strand, within Xcc-8004.5045.1at 4785.749 kb on - strand, within Xcc-8004.5045.1at 4785.874 kb on - strandat 4786.039 kb on + strandat 4786.039 kb on + strandat 4786.039 kb on + strandat 4786.040 kb on - strandat 4786.040 kb on - strandat 4786.129 kb on + strand, within Xcc-8004.5046.1at 4786.130 kb on - strand, within Xcc-8004.5046.1at 4786.130 kb on - strand, within Xcc-8004.5046.1at 4786.130 kb on - strand, within Xcc-8004.5046.1at 4786.130 kb on - strand, within Xcc-8004.5046.1at 4786.184 kb on - strand, within Xcc-8004.5046.1at 4786.184 kb on - strand, within Xcc-8004.5046.1at 4786.184 kb on - strand, within Xcc-8004.5046.1at 4786.184 kb on - strand, within Xcc-8004.5046.1at 4786.194 kb on + strand, within Xcc-8004.5046.1at 4786.195 kb on - strand, within Xcc-8004.5046.1at 4786.292 kb on - strand, within Xcc-8004.5046.1at 4786.423 kb on + strand, within Xcc-8004.5046.1at 4786.607 kb on - strand, within Xcc-8004.5046.1at 4786.607 kb on - strand, within Xcc-8004.5046.1at 4786.782 kb on + strandat 4786.782 kb on + strandat 4786.821 kb on + strandat 4786.821 kb on + strandat 4786.821 kb on + strandat 4786.821 kb on + strandat 4786.822 kb on - strandat 4786.823 kb on + strandat 4786.823 kb on + strandat 4786.823 kb on + strandat 4786.823 kb on + strandat 4786.823 kb on + strandat 4786.823 kb on + strandat 4786.823 kb on + strandat 4786.824 kb on - strandat 4786.824 kb on - strandat 4786.824 kb on - strandat 4786.824 kb on - strandat 4786.827 kb on - strandat 4786.933 kb on + strandat 4786.933 kb on + strandat 4787.197 kb on + strand, within Xcc-8004.5047.1at 4787.476 kb on + strand, within Xcc-8004.5047.1at 4787.477 kb on - strand, within Xcc-8004.5047.1at 4787.667 kb on + strand, within Xcc-8004.5047.1at 4787.668 kb on - strand, within Xcc-8004.5047.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,785,084 - Xcc-8004.5045.1 0.46 +0.4
4,785,084 - Xcc-8004.5045.1 0.46 +0.0
4,785,084 - Xcc-8004.5045.1 0.46 +2.3
4,785,112 + Xcc-8004.5045.1 0.48 -0.3
4,785,112 + Xcc-8004.5045.1 0.48 +0.4
4,785,113 - Xcc-8004.5045.1 0.48 +0.3
4,785,113 - Xcc-8004.5045.1 0.48 +2.5
4,785,113 - Xcc-8004.5045.1 0.48 -0.0
4,785,119 + Xcc-8004.5045.1 0.48 +1.0
4,785,119 + Xcc-8004.5045.1 0.48 -0.9
4,785,119 + Xcc-8004.5045.1 0.48 -0.9
4,785,119 + Xcc-8004.5045.1 0.48 +0.2
4,785,119 + Xcc-8004.5045.1 0.48 +0.1
4,785,120 - Xcc-8004.5045.1 0.48 -2.1
4,785,120 - Xcc-8004.5045.1 0.48 +0.3
4,785,120 - Xcc-8004.5045.1 0.48 +0.1
4,785,120 - Xcc-8004.5045.1 0.48 +0.5
4,785,120 - Xcc-8004.5045.1 0.48 +0.1
4,785,274 + Xcc-8004.5045.1 0.58 -0.1
4,785,275 - Xcc-8004.5045.1 0.58 +3.0
4,785,275 - Xcc-8004.5045.1 0.58 +1.0
4,785,304 + Xcc-8004.5045.1 0.60 +1.2
4,785,304 + Xcc-8004.5045.1 0.60 +0.5
4,785,304 + Xcc-8004.5045.1 0.60 -0.7
4,785,304 + Xcc-8004.5045.1 0.60 +4.3
4,785,304 + Xcc-8004.5045.1 0.60 -0.2
4,785,304 + Xcc-8004.5045.1 0.60 -2.1
4,785,304 + Xcc-8004.5045.1 0.60 -0.3
4,785,304 + Xcc-8004.5045.1 0.60 +0.9
4,785,304 + Xcc-8004.5045.1 0.60 -2.5
4,785,305 - Xcc-8004.5045.1 0.60 -1.8
4,785,305 - Xcc-8004.5045.1 0.60 -0.9
4,785,370 + Xcc-8004.5045.1 0.64 +2.8
4,785,371 - Xcc-8004.5045.1 0.64 -0.5
4,785,379 + Xcc-8004.5045.1 0.65 +0.8
4,785,379 + Xcc-8004.5045.1 0.65 -1.2
4,785,379 + Xcc-8004.5045.1 0.65 -0.5
4,785,379 + Xcc-8004.5045.1 0.65 +1.8
4,785,379 + Xcc-8004.5045.1 0.65 -1.0
4,785,379 + Xcc-8004.5045.1 0.65 +1.1
4,785,379 + Xcc-8004.5045.1 0.65 -2.4
4,785,380 - Xcc-8004.5045.1 0.65 +0.7
4,785,380 - Xcc-8004.5045.1 0.65 +0.0
4,785,380 - Xcc-8004.5045.1 0.65 -1.0
4,785,481 + Xcc-8004.5045.1 0.71 +1.8
4,785,481 + Xcc-8004.5045.1 0.71 +0.3
4,785,481 + Xcc-8004.5045.1 0.71 +1.0
4,785,481 + Xcc-8004.5045.1 0.71 +1.2
4,785,481 + Xcc-8004.5045.1 0.71 +0.1
4,785,482 - Xcc-8004.5045.1 0.71 +0.7
4,785,482 - Xcc-8004.5045.1 0.71 +1.1
4,785,482 - Xcc-8004.5045.1 0.71 -2.2
4,785,482 - Xcc-8004.5045.1 0.71 -2.0
4,785,487 + Xcc-8004.5045.1 0.71 -0.7
4,785,487 + Xcc-8004.5045.1 0.71 -1.2
4,785,487 + Xcc-8004.5045.1 0.71 -0.8
4,785,488 - Xcc-8004.5045.1 0.72 +2.0
4,785,488 - Xcc-8004.5045.1 0.72 +0.6
4,785,488 - Xcc-8004.5045.1 0.72 -1.4
4,785,612 + Xcc-8004.5045.1 0.79 -1.7
4,785,622 + Xcc-8004.5045.1 0.80 +1.3
4,785,622 + Xcc-8004.5045.1 0.80 +1.5
4,785,623 - Xcc-8004.5045.1 0.80 +0.9
4,785,695 - Xcc-8004.5045.1 0.85 -0.9
4,785,695 - Xcc-8004.5045.1 0.85 +0.9
4,785,748 + Xcc-8004.5045.1 0.88 +1.9
4,785,749 - Xcc-8004.5045.1 0.88 -2.3
4,785,874 - +0.1
4,786,039 + +0.1
4,786,039 + +0.1
4,786,039 + -1.0
4,786,040 - -0.7
4,786,040 - +0.1
4,786,129 + Xcc-8004.5046.1 0.16 -0.5
4,786,130 - Xcc-8004.5046.1 0.16 +1.7
4,786,130 - Xcc-8004.5046.1 0.16 +1.9
4,786,130 - Xcc-8004.5046.1 0.16 +0.7
4,786,130 - Xcc-8004.5046.1 0.16 +2.5
4,786,184 - Xcc-8004.5046.1 0.23 +1.0
4,786,184 - Xcc-8004.5046.1 0.23 +1.3
4,786,184 - Xcc-8004.5046.1 0.23 +1.9
4,786,184 - Xcc-8004.5046.1 0.23 +0.9
4,786,194 + Xcc-8004.5046.1 0.25 +1.2
4,786,195 - Xcc-8004.5046.1 0.25 -0.7
4,786,292 - Xcc-8004.5046.1 0.37 +6.0
4,786,423 + Xcc-8004.5046.1 0.54 -1.5
4,786,607 - Xcc-8004.5046.1 0.78 -1.1
4,786,607 - Xcc-8004.5046.1 0.78 -1.1
4,786,782 + +2.9
4,786,782 + +2.3
4,786,821 + -1.9
4,786,821 + -0.1
4,786,821 + +0.5
4,786,821 + +0.0
4,786,822 - -1.2
4,786,823 + -2.3
4,786,823 + -2.2
4,786,823 + +0.9
4,786,823 + -1.3
4,786,823 + +0.7
4,786,823 + -2.3
4,786,823 + -0.5
4,786,824 - +0.5
4,786,824 - -0.5
4,786,824 - -0.0
4,786,824 - -0.7
4,786,827 - +1.0
4,786,933 + -0.2
4,786,933 + +0.9
4,787,197 + Xcc-8004.5047.1 0.32 +0.5
4,787,476 + Xcc-8004.5047.1 0.60 +0.1
4,787,477 - Xcc-8004.5047.1 0.60 -0.6
4,787,667 + Xcc-8004.5047.1 0.79 -2.6
4,787,668 - Xcc-8004.5047.1 0.80 +1.2

Or see this region's nucleotide sequence