Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5006.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5005.1 and Xcc-8004.5006.1 are separated by 14 nucleotidesXcc-8004.5006.1 and Xcc-8004.5007.1 are separated by 126 nucleotides Xcc-8004.5005.1: Xcc-8004.5005.1 - FIG01209725: hypothetical protein, at 4,742,335 to 4,743,522 Xcc-8004.5005.1 Xcc-8004.5006.1: Xcc-8004.5006.1 - FIG01210483: hypothetical protein, at 4,743,537 to 4,745,111 Xcc-8004.5006.1 Xcc-8004.5007.1: Xcc-8004.5007.1 - Sensor protein PhoQ (EC 2.7.13.3), at 4,745,238 to 4,746,653 Xcc-8004.5007.1 Position (kb) 4743 4744 4745 4746Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4742.549 kb on + strand, within Xcc-8004.5005.1at 4742.550 kb on - strand, within Xcc-8004.5005.1at 4742.550 kb on - strand, within Xcc-8004.5005.1at 4742.666 kb on + strand, within Xcc-8004.5005.1at 4742.743 kb on - strand, within Xcc-8004.5005.1at 4742.743 kb on - strand, within Xcc-8004.5005.1at 4742.743 kb on - strand, within Xcc-8004.5005.1at 4742.743 kb on - strand, within Xcc-8004.5005.1at 4742.942 kb on + strand, within Xcc-8004.5005.1at 4742.942 kb on + strand, within Xcc-8004.5005.1at 4742.942 kb on + strand, within Xcc-8004.5005.1at 4742.942 kb on + strand, within Xcc-8004.5005.1at 4742.942 kb on + strand, within Xcc-8004.5005.1at 4742.942 kb on + strand, within Xcc-8004.5005.1at 4742.942 kb on + strand, within Xcc-8004.5005.1at 4742.942 kb on + strand, within Xcc-8004.5005.1at 4742.942 kb on + strand, within Xcc-8004.5005.1at 4742.942 kb on + strand, within Xcc-8004.5005.1at 4742.943 kb on - strand, within Xcc-8004.5005.1at 4742.943 kb on - strand, within Xcc-8004.5005.1at 4742.943 kb on - strand, within Xcc-8004.5005.1at 4742.943 kb on - strand, within Xcc-8004.5005.1at 4742.943 kb on - strand, within Xcc-8004.5005.1at 4743.057 kb on + strand, within Xcc-8004.5005.1at 4743.359 kb on + strand, within Xcc-8004.5005.1at 4743.359 kb on + strand, within Xcc-8004.5005.1at 4743.359 kb on + strand, within Xcc-8004.5005.1at 4743.360 kb on - strand, within Xcc-8004.5005.1at 4743.544 kb on + strandat 4744.099 kb on + strand, within Xcc-8004.5006.1at 4744.099 kb on + strand, within Xcc-8004.5006.1at 4744.344 kb on + strand, within Xcc-8004.5006.1at 4744.345 kb on - strand, within Xcc-8004.5006.1at 4744.345 kb on - strand, within Xcc-8004.5006.1at 4744.400 kb on + strand, within Xcc-8004.5006.1at 4744.400 kb on + strand, within Xcc-8004.5006.1at 4744.401 kb on - strand, within Xcc-8004.5006.1at 4744.401 kb on - strand, within Xcc-8004.5006.1at 4744.401 kb on - strand, within Xcc-8004.5006.1at 4744.401 kb on - strand, within Xcc-8004.5006.1at 4744.426 kb on + strand, within Xcc-8004.5006.1at 4744.426 kb on + strand, within Xcc-8004.5006.1at 4744.426 kb on + strand, within Xcc-8004.5006.1at 4744.426 kb on + strand, within Xcc-8004.5006.1at 4744.426 kb on + strand, within Xcc-8004.5006.1at 4744.427 kb on - strand, within Xcc-8004.5006.1at 4744.427 kb on - strand, within Xcc-8004.5006.1at 4744.558 kb on + strand, within Xcc-8004.5006.1at 4744.559 kb on - strand, within Xcc-8004.5006.1at 4744.597 kb on + strand, within Xcc-8004.5006.1at 4744.597 kb on + strand, within Xcc-8004.5006.1at 4744.597 kb on + strand, within Xcc-8004.5006.1at 4744.598 kb on - strand, within Xcc-8004.5006.1at 4744.657 kb on + strand, within Xcc-8004.5006.1at 4744.658 kb on - strand, within Xcc-8004.5006.1at 4744.658 kb on - strand, within Xcc-8004.5006.1at 4744.658 kb on - strand, within Xcc-8004.5006.1at 4744.658 kb on - strand, within Xcc-8004.5006.1at 4744.671 kb on + strand, within Xcc-8004.5006.1at 4744.672 kb on - strand, within Xcc-8004.5006.1at 4744.672 kb on - strand, within Xcc-8004.5006.1at 4744.789 kb on + strand, within Xcc-8004.5006.1at 4744.789 kb on + strand, within Xcc-8004.5006.1at 4744.789 kb on + strand, within Xcc-8004.5006.1at 4744.789 kb on + strand, within Xcc-8004.5006.1at 4744.789 kb on + strand, within Xcc-8004.5006.1at 4744.790 kb on - strand, within Xcc-8004.5006.1at 4744.817 kb on + strand, within Xcc-8004.5006.1at 4744.903 kb on + strand, within Xcc-8004.5006.1at 4744.904 kb on - strand, within Xcc-8004.5006.1at 4744.957 kb on + strandat 4744.957 kb on + strandat 4744.957 kb on + strandat 4744.958 kb on - strandat 4745.141 kb on - strandat 4745.141 kb on - strandat 4745.141 kb on - strandat 4745.151 kb on + strandat 4745.151 kb on + strandat 4745.151 kb on + strandat 4745.151 kb on + strandat 4745.152 kb on - strandat 4745.152 kb on - strandat 4745.239 kb on + strandat 4745.239 kb on + strandat 4745.239 kb on + strandat 4745.239 kb on + strandat 4745.239 kb on + strandat 4745.239 kb on + strandat 4745.240 kb on - strandat 4745.240 kb on - strandat 4745.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,742,549 + Xcc-8004.5005.1 0.18 -1.4
4,742,550 - Xcc-8004.5005.1 0.18 +0.3
4,742,550 - Xcc-8004.5005.1 0.18 -0.9
4,742,666 + Xcc-8004.5005.1 0.28 -2.9
4,742,743 - Xcc-8004.5005.1 0.34 +0.6
4,742,743 - Xcc-8004.5005.1 0.34 +1.7
4,742,743 - Xcc-8004.5005.1 0.34 +1.7
4,742,743 - Xcc-8004.5005.1 0.34 +0.6
4,742,942 + Xcc-8004.5005.1 0.51 -0.3
4,742,942 + Xcc-8004.5005.1 0.51 +0.9
4,742,942 + Xcc-8004.5005.1 0.51 -1.2
4,742,942 + Xcc-8004.5005.1 0.51 -2.1
4,742,942 + Xcc-8004.5005.1 0.51 +0.9
4,742,942 + Xcc-8004.5005.1 0.51 +1.6
4,742,942 + Xcc-8004.5005.1 0.51 -0.2
4,742,942 + Xcc-8004.5005.1 0.51 +1.3
4,742,942 + Xcc-8004.5005.1 0.51 -2.2
4,742,942 + Xcc-8004.5005.1 0.51 -0.3
4,742,943 - Xcc-8004.5005.1 0.51 +0.3
4,742,943 - Xcc-8004.5005.1 0.51 -0.1
4,742,943 - Xcc-8004.5005.1 0.51 +1.5
4,742,943 - Xcc-8004.5005.1 0.51 -0.3
4,742,943 - Xcc-8004.5005.1 0.51 -0.7
4,743,057 + Xcc-8004.5005.1 0.61 +0.7
4,743,359 + Xcc-8004.5005.1 0.86 +0.0
4,743,359 + Xcc-8004.5005.1 0.86 +1.4
4,743,359 + Xcc-8004.5005.1 0.86 -1.0
4,743,360 - Xcc-8004.5005.1 0.86 -0.4
4,743,544 + +1.2
4,744,099 + Xcc-8004.5006.1 0.36 +1.1
4,744,099 + Xcc-8004.5006.1 0.36 -2.6
4,744,344 + Xcc-8004.5006.1 0.51 +0.2
4,744,345 - Xcc-8004.5006.1 0.51 -0.9
4,744,345 - Xcc-8004.5006.1 0.51 +1.0
4,744,400 + Xcc-8004.5006.1 0.55 -0.2
4,744,400 + Xcc-8004.5006.1 0.55 +1.6
4,744,401 - Xcc-8004.5006.1 0.55 +0.3
4,744,401 - Xcc-8004.5006.1 0.55 +0.2
4,744,401 - Xcc-8004.5006.1 0.55 +1.7
4,744,401 - Xcc-8004.5006.1 0.55 +1.0
4,744,426 + Xcc-8004.5006.1 0.56 +0.5
4,744,426 + Xcc-8004.5006.1 0.56 -0.7
4,744,426 + Xcc-8004.5006.1 0.56 +0.7
4,744,426 + Xcc-8004.5006.1 0.56 +3.0
4,744,426 + Xcc-8004.5006.1 0.56 +0.9
4,744,427 - Xcc-8004.5006.1 0.57 +1.0
4,744,427 - Xcc-8004.5006.1 0.57 +2.0
4,744,558 + Xcc-8004.5006.1 0.65 +1.5
4,744,559 - Xcc-8004.5006.1 0.65 +0.1
4,744,597 + Xcc-8004.5006.1 0.67 -0.1
4,744,597 + Xcc-8004.5006.1 0.67 +1.5
4,744,597 + Xcc-8004.5006.1 0.67 -2.9
4,744,598 - Xcc-8004.5006.1 0.67 +2.0
4,744,657 + Xcc-8004.5006.1 0.71 +0.5
4,744,658 - Xcc-8004.5006.1 0.71 +1.5
4,744,658 - Xcc-8004.5006.1 0.71 +1.5
4,744,658 - Xcc-8004.5006.1 0.71 +0.7
4,744,658 - Xcc-8004.5006.1 0.71 -2.3
4,744,671 + Xcc-8004.5006.1 0.72 +0.7
4,744,672 - Xcc-8004.5006.1 0.72 -0.2
4,744,672 - Xcc-8004.5006.1 0.72 +0.9
4,744,789 + Xcc-8004.5006.1 0.79 +1.7
4,744,789 + Xcc-8004.5006.1 0.79 +1.6
4,744,789 + Xcc-8004.5006.1 0.79 -0.1
4,744,789 + Xcc-8004.5006.1 0.79 -1.9
4,744,789 + Xcc-8004.5006.1 0.79 +2.0
4,744,790 - Xcc-8004.5006.1 0.80 +0.0
4,744,817 + Xcc-8004.5006.1 0.81 -1.7
4,744,903 + Xcc-8004.5006.1 0.87 -1.1
4,744,904 - Xcc-8004.5006.1 0.87 +1.0
4,744,957 + +1.5
4,744,957 + +1.3
4,744,957 + -1.5
4,744,958 - -1.0
4,745,141 - -1.2
4,745,141 - -1.3
4,745,141 - +0.2
4,745,151 + -0.5
4,745,151 + +0.5
4,745,151 + +1.0
4,745,151 + -1.8
4,745,152 - +1.1
4,745,152 - +0.0
4,745,239 + +1.7
4,745,239 + +0.8
4,745,239 + -1.4
4,745,239 + +0.0
4,745,239 + -0.6
4,745,239 + -2.2
4,745,240 - +0.3
4,745,240 - -0.5
4,745,240 - +0.6

Or see this region's nucleotide sequence