Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4801.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4800.1 and Xcc-8004.4801.1 are separated by 64 nucleotidesXcc-8004.4801.1 and Xcc-8004.4802.1 overlap by 1 nucleotidesXcc-8004.4802.1 and Xcc-8004.4803.1 are separated by 109 nucleotides Xcc-8004.4800.1: Xcc-8004.4800.1 - FIG074102: hypothetical protein, at 4,570,686 to 4,572,245 Xcc-8004.4800.1 Xcc-8004.4801.1: Xcc-8004.4801.1 - FIG01211532: hypothetical protein, at 4,572,310 to 4,572,981 Xcc-8004.4801.1 Xcc-8004.4802.1: Xcc-8004.4802.1 - FIG01209985: hypothetical protein, at 4,572,981 to 4,573,547 Xcc-8004.4802.1 Xcc-8004.4803.1: Xcc-8004.4803.1 - Hydrolase, haloacid delahogenase-like family, at 4,573,657 to 4,574,409 Xcc-8004.4803.1 Position (kb) 4572 4573Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 4571.384 kb on + strand, within Xcc-8004.4800.1at 4571.385 kb on - strand, within Xcc-8004.4800.1at 4571.446 kb on + strand, within Xcc-8004.4800.1at 4571.446 kb on + strand, within Xcc-8004.4800.1at 4571.568 kb on + strand, within Xcc-8004.4800.1at 4571.586 kb on + strand, within Xcc-8004.4800.1at 4571.587 kb on - strand, within Xcc-8004.4800.1at 4571.758 kb on + strand, within Xcc-8004.4800.1at 4571.758 kb on + strand, within Xcc-8004.4800.1at 4571.758 kb on + strand, within Xcc-8004.4800.1at 4571.759 kb on - strand, within Xcc-8004.4800.1at 4571.759 kb on - strand, within Xcc-8004.4800.1at 4571.759 kb on - strand, within Xcc-8004.4800.1at 4571.761 kb on + strand, within Xcc-8004.4800.1at 4571.762 kb on - strand, within Xcc-8004.4800.1at 4571.962 kb on + strand, within Xcc-8004.4800.1at 4571.962 kb on + strand, within Xcc-8004.4800.1at 4571.963 kb on - strand, within Xcc-8004.4800.1at 4571.983 kb on + strand, within Xcc-8004.4800.1at 4571.983 kb on + strand, within Xcc-8004.4800.1at 4571.984 kb on - strand, within Xcc-8004.4800.1at 4571.984 kb on - strand, within Xcc-8004.4800.1at 4571.984 kb on - strand, within Xcc-8004.4800.1at 4571.984 kb on - strand, within Xcc-8004.4800.1at 4572.312 kb on - strandat 4572.440 kb on + strand, within Xcc-8004.4801.1at 4572.441 kb on - strand, within Xcc-8004.4801.1at 4572.441 kb on - strand, within Xcc-8004.4801.1at 4572.605 kb on + strand, within Xcc-8004.4801.1at 4572.605 kb on + strand, within Xcc-8004.4801.1at 4572.605 kb on + strand, within Xcc-8004.4801.1at 4572.606 kb on - strand, within Xcc-8004.4801.1at 4572.606 kb on - strand, within Xcc-8004.4801.1at 4572.606 kb on - strand, within Xcc-8004.4801.1at 4572.606 kb on - strand, within Xcc-8004.4801.1at 4572.606 kb on - strand, within Xcc-8004.4801.1at 4572.606 kb on - strand, within Xcc-8004.4801.1at 4572.654 kb on - strand, within Xcc-8004.4801.1at 4572.719 kb on + strand, within Xcc-8004.4801.1at 4572.994 kb on + strandat 4573.003 kb on + strandat 4573.003 kb on + strandat 4573.003 kb on + strandat 4573.004 kb on - strandat 4573.004 kb on - strandat 4573.006 kb on + strandat 4573.007 kb on - strandat 4573.007 kb on - strandat 4573.064 kb on - strand, within Xcc-8004.4802.1at 4573.099 kb on + strand, within Xcc-8004.4802.1at 4573.100 kb on - strand, within Xcc-8004.4802.1at 4573.114 kb on + strand, within Xcc-8004.4802.1at 4573.114 kb on + strand, within Xcc-8004.4802.1at 4573.130 kb on - strand, within Xcc-8004.4802.1at 4573.130 kb on - strand, within Xcc-8004.4802.1at 4573.132 kb on + strand, within Xcc-8004.4802.1at 4573.132 kb on + strand, within Xcc-8004.4802.1at 4573.132 kb on + strand, within Xcc-8004.4802.1at 4573.132 kb on + strand, within Xcc-8004.4802.1at 4573.133 kb on - strand, within Xcc-8004.4802.1at 4573.133 kb on - strand, within Xcc-8004.4802.1at 4573.133 kb on - strand, within Xcc-8004.4802.1at 4573.133 kb on - strand, within Xcc-8004.4802.1at 4573.144 kb on + strand, within Xcc-8004.4802.1at 4573.270 kb on - strand, within Xcc-8004.4802.1at 4573.303 kb on + strand, within Xcc-8004.4802.1at 4573.303 kb on + strand, within Xcc-8004.4802.1at 4573.303 kb on + strand, within Xcc-8004.4802.1at 4573.303 kb on + strand, within Xcc-8004.4802.1at 4573.303 kb on + strand, within Xcc-8004.4802.1at 4573.304 kb on - strand, within Xcc-8004.4802.1at 4573.304 kb on - strand, within Xcc-8004.4802.1at 4573.304 kb on - strand, within Xcc-8004.4802.1at 4573.339 kb on + strand, within Xcc-8004.4802.1at 4573.339 kb on + strand, within Xcc-8004.4802.1at 4573.339 kb on + strand, within Xcc-8004.4802.1at 4573.340 kb on - strand, within Xcc-8004.4802.1at 4573.340 kb on - strand, within Xcc-8004.4802.1at 4573.340 kb on - strand, within Xcc-8004.4802.1at 4573.340 kb on - strand, within Xcc-8004.4802.1at 4573.340 kb on - strand, within Xcc-8004.4802.1at 4573.399 kb on + strand, within Xcc-8004.4802.1at 4573.399 kb on + strand, within Xcc-8004.4802.1at 4573.399 kb on + strand, within Xcc-8004.4802.1at 4573.400 kb on - strand, within Xcc-8004.4802.1at 4573.402 kb on + strand, within Xcc-8004.4802.1at 4573.402 kb on + strand, within Xcc-8004.4802.1at 4573.402 kb on + strand, within Xcc-8004.4802.1at 4573.402 kb on + strand, within Xcc-8004.4802.1at 4573.402 kb on + strand, within Xcc-8004.4802.1at 4573.403 kb on - strand, within Xcc-8004.4802.1at 4573.403 kb on - strand, within Xcc-8004.4802.1at 4573.403 kb on - strand, within Xcc-8004.4802.1at 4573.403 kb on - strand, within Xcc-8004.4802.1at 4573.635 kb on + strandat 4573.636 kb on - strandat 4573.658 kb on + strandat 4573.658 kb on + strandat 4573.658 kb on + strandat 4573.659 kb on - strandat 4573.659 kb on - strandat 4573.790 kb on + strand, within Xcc-8004.4803.1at 4573.790 kb on + strand, within Xcc-8004.4803.1at 4573.799 kb on + strand, within Xcc-8004.4803.1at 4573.799 kb on + strand, within Xcc-8004.4803.1at 4573.799 kb on + strand, within Xcc-8004.4803.1at 4573.799 kb on + strand, within Xcc-8004.4803.1at 4573.799 kb on + strand, within Xcc-8004.4803.1at 4573.799 kb on + strand, within Xcc-8004.4803.1at 4573.799 kb on + strand, within Xcc-8004.4803.1at 4573.800 kb on - strand, within Xcc-8004.4803.1at 4573.800 kb on - strand, within Xcc-8004.4803.1at 4573.800 kb on - strand, within Xcc-8004.4803.1at 4573.800 kb on - strand, within Xcc-8004.4803.1at 4573.800 kb on - strand, within Xcc-8004.4803.1at 4573.800 kb on - strand, within Xcc-8004.4803.1at 4573.910 kb on + strand, within Xcc-8004.4803.1at 4573.910 kb on + strand, within Xcc-8004.4803.1at 4573.910 kb on + strand, within Xcc-8004.4803.1at 4573.911 kb on - strand, within Xcc-8004.4803.1at 4573.911 kb on - strand, within Xcc-8004.4803.1at 4573.911 kb on - strand, within Xcc-8004.4803.1at 4573.911 kb on - strand, within Xcc-8004.4803.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,571,384 + Xcc-8004.4800.1 0.45 -1.3
4,571,385 - Xcc-8004.4800.1 0.45 -3.9
4,571,446 + Xcc-8004.4800.1 0.49 -0.4
4,571,446 + Xcc-8004.4800.1 0.49 +0.2
4,571,568 + Xcc-8004.4800.1 0.57 -0.0
4,571,586 + Xcc-8004.4800.1 0.58 -0.1
4,571,587 - Xcc-8004.4800.1 0.58 -1.0
4,571,758 + Xcc-8004.4800.1 0.69 -0.8
4,571,758 + Xcc-8004.4800.1 0.69 -2.2
4,571,758 + Xcc-8004.4800.1 0.69 -1.3
4,571,759 - Xcc-8004.4800.1 0.69 +0.5
4,571,759 - Xcc-8004.4800.1 0.69 -1.9
4,571,759 - Xcc-8004.4800.1 0.69 +0.1
4,571,761 + Xcc-8004.4800.1 0.69 -0.1
4,571,762 - Xcc-8004.4800.1 0.69 +2.1
4,571,962 + Xcc-8004.4800.1 0.82 -0.2
4,571,962 + Xcc-8004.4800.1 0.82 -0.4
4,571,963 - Xcc-8004.4800.1 0.82 +0.7
4,571,983 + Xcc-8004.4800.1 0.83 +0.8
4,571,983 + Xcc-8004.4800.1 0.83 +0.3
4,571,984 - Xcc-8004.4800.1 0.83 +0.3
4,571,984 - Xcc-8004.4800.1 0.83 +0.2
4,571,984 - Xcc-8004.4800.1 0.83 -0.4
4,571,984 - Xcc-8004.4800.1 0.83 +0.8
4,572,312 - -1.2
4,572,440 + Xcc-8004.4801.1 0.19 +1.7
4,572,441 - Xcc-8004.4801.1 0.19 -0.3
4,572,441 - Xcc-8004.4801.1 0.19 -0.9
4,572,605 + Xcc-8004.4801.1 0.44 -0.2
4,572,605 + Xcc-8004.4801.1 0.44 +1.7
4,572,605 + Xcc-8004.4801.1 0.44 -1.1
4,572,606 - Xcc-8004.4801.1 0.44 +2.6
4,572,606 - Xcc-8004.4801.1 0.44 +1.0
4,572,606 - Xcc-8004.4801.1 0.44 -0.7
4,572,606 - Xcc-8004.4801.1 0.44 +2.0
4,572,606 - Xcc-8004.4801.1 0.44 -0.3
4,572,606 - Xcc-8004.4801.1 0.44 -0.7
4,572,654 - Xcc-8004.4801.1 0.51 +1.4
4,572,719 + Xcc-8004.4801.1 0.61 +2.6
4,572,994 + -0.5
4,573,003 + -2.1
4,573,003 + -0.8
4,573,003 + +1.0
4,573,004 - +0.8
4,573,004 - -2.0
4,573,006 + +1.4
4,573,007 - +0.9
4,573,007 - -0.2
4,573,064 - Xcc-8004.4802.1 0.15 +0.1
4,573,099 + Xcc-8004.4802.1 0.21 +2.5
4,573,100 - Xcc-8004.4802.1 0.21 -1.7
4,573,114 + Xcc-8004.4802.1 0.23 -0.2
4,573,114 + Xcc-8004.4802.1 0.23 +1.8
4,573,130 - Xcc-8004.4802.1 0.26 +0.8
4,573,130 - Xcc-8004.4802.1 0.26 +0.1
4,573,132 + Xcc-8004.4802.1 0.27 -0.8
4,573,132 + Xcc-8004.4802.1 0.27 +1.0
4,573,132 + Xcc-8004.4802.1 0.27 +0.5
4,573,132 + Xcc-8004.4802.1 0.27 +0.7
4,573,133 - Xcc-8004.4802.1 0.27 +1.6
4,573,133 - Xcc-8004.4802.1 0.27 +5.5
4,573,133 - Xcc-8004.4802.1 0.27 -2.1
4,573,133 - Xcc-8004.4802.1 0.27 +0.8
4,573,144 + Xcc-8004.4802.1 0.29 -0.8
4,573,270 - Xcc-8004.4802.1 0.51 +0.6
4,573,303 + Xcc-8004.4802.1 0.57 -0.9
4,573,303 + Xcc-8004.4802.1 0.57 -2.3
4,573,303 + Xcc-8004.4802.1 0.57 +0.7
4,573,303 + Xcc-8004.4802.1 0.57 +1.0
4,573,303 + Xcc-8004.4802.1 0.57 -0.0
4,573,304 - Xcc-8004.4802.1 0.57 +0.4
4,573,304 - Xcc-8004.4802.1 0.57 -1.0
4,573,304 - Xcc-8004.4802.1 0.57 +0.6
4,573,339 + Xcc-8004.4802.1 0.63 -0.8
4,573,339 + Xcc-8004.4802.1 0.63 +1.0
4,573,339 + Xcc-8004.4802.1 0.63 +1.6
4,573,340 - Xcc-8004.4802.1 0.63 +1.6
4,573,340 - Xcc-8004.4802.1 0.63 +0.1
4,573,340 - Xcc-8004.4802.1 0.63 -2.3
4,573,340 - Xcc-8004.4802.1 0.63 -0.0
4,573,340 - Xcc-8004.4802.1 0.63 +0.1
4,573,399 + Xcc-8004.4802.1 0.74 +1.3
4,573,399 + Xcc-8004.4802.1 0.74 +1.8
4,573,399 + Xcc-8004.4802.1 0.74 -0.2
4,573,400 - Xcc-8004.4802.1 0.74 +0.8
4,573,402 + Xcc-8004.4802.1 0.74 -0.2
4,573,402 + Xcc-8004.4802.1 0.74 +0.3
4,573,402 + Xcc-8004.4802.1 0.74 +0.2
4,573,402 + Xcc-8004.4802.1 0.74 -1.7
4,573,402 + Xcc-8004.4802.1 0.74 -2.7
4,573,403 - Xcc-8004.4802.1 0.74 -0.7
4,573,403 - Xcc-8004.4802.1 0.74 -0.8
4,573,403 - Xcc-8004.4802.1 0.74 -0.9
4,573,403 - Xcc-8004.4802.1 0.74 -2.7
4,573,635 + -0.3
4,573,636 - +1.1
4,573,658 + -1.3
4,573,658 + +0.6
4,573,658 + +1.1
4,573,659 - +2.3
4,573,659 - +1.0
4,573,790 + Xcc-8004.4803.1 0.18 +1.3
4,573,790 + Xcc-8004.4803.1 0.18 -0.0
4,573,799 + Xcc-8004.4803.1 0.19 -1.5
4,573,799 + Xcc-8004.4803.1 0.19 -0.8
4,573,799 + Xcc-8004.4803.1 0.19 +0.1
4,573,799 + Xcc-8004.4803.1 0.19 -1.0
4,573,799 + Xcc-8004.4803.1 0.19 -0.6
4,573,799 + Xcc-8004.4803.1 0.19 -0.2
4,573,799 + Xcc-8004.4803.1 0.19 -0.6
4,573,800 - Xcc-8004.4803.1 0.19 +1.7
4,573,800 - Xcc-8004.4803.1 0.19 +2.1
4,573,800 - Xcc-8004.4803.1 0.19 +1.0
4,573,800 - Xcc-8004.4803.1 0.19 -0.7
4,573,800 - Xcc-8004.4803.1 0.19 +0.0
4,573,800 - Xcc-8004.4803.1 0.19 +1.0
4,573,910 + Xcc-8004.4803.1 0.34 -1.8
4,573,910 + Xcc-8004.4803.1 0.34 +1.2
4,573,910 + Xcc-8004.4803.1 0.34 +2.6
4,573,911 - Xcc-8004.4803.1 0.34 +0.6
4,573,911 - Xcc-8004.4803.1 0.34 +0.6
4,573,911 - Xcc-8004.4803.1 0.34 -0.9
4,573,911 - Xcc-8004.4803.1 0.34 +0.4

Or see this region's nucleotide sequence