Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4790.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4789.1 and Xcc-8004.4790.1 are separated by 174 nucleotidesXcc-8004.4790.1 and Xcc-8004.4791.1 are separated by 259 nucleotides Xcc-8004.4789.1: Xcc-8004.4789.1 - NADPH dependent preQ0 reductase (EC 1.7.1.13), at 4,557,233 to 4,558,048 Xcc-8004.4789.1 Xcc-8004.4790.1: Xcc-8004.4790.1 - N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47), at 4,558,223 to 4,559,527 Xcc-8004.4790.1 Xcc-8004.4791.1: Xcc-8004.4791.1 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 4,559,787 to 4,561,025 Xcc-8004.4791.1 Position (kb) 4558 4559 4560Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4557.235 kb on - strandat 4557.235 kb on - strandat 4557.235 kb on - strandat 4557.322 kb on + strand, within Xcc-8004.4789.1at 4557.323 kb on - strand, within Xcc-8004.4789.1at 4557.324 kb on + strand, within Xcc-8004.4789.1at 4557.324 kb on + strand, within Xcc-8004.4789.1at 4557.324 kb on + strand, within Xcc-8004.4789.1at 4557.324 kb on + strand, within Xcc-8004.4789.1at 4557.324 kb on + strand, within Xcc-8004.4789.1at 4557.324 kb on + strand, within Xcc-8004.4789.1at 4557.324 kb on + strand, within Xcc-8004.4789.1at 4557.325 kb on - strand, within Xcc-8004.4789.1at 4557.435 kb on + strand, within Xcc-8004.4789.1at 4557.436 kb on - strand, within Xcc-8004.4789.1at 4557.586 kb on - strand, within Xcc-8004.4789.1at 4557.586 kb on - strand, within Xcc-8004.4789.1at 4557.586 kb on - strand, within Xcc-8004.4789.1at 4557.606 kb on + strand, within Xcc-8004.4789.1at 4557.784 kb on - strand, within Xcc-8004.4789.1at 4557.891 kb on + strand, within Xcc-8004.4789.1at 4557.891 kb on + strand, within Xcc-8004.4789.1at 4557.891 kb on + strand, within Xcc-8004.4789.1at 4557.892 kb on - strand, within Xcc-8004.4789.1at 4557.892 kb on - strand, within Xcc-8004.4789.1at 4557.994 kb on - strandat 4558.060 kb on - strandat 4558.086 kb on + strandat 4558.086 kb on + strandat 4558.087 kb on - strandat 4558.087 kb on - strandat 4558.087 kb on - strandat 4558.239 kb on + strandat 4558.239 kb on + strandat 4558.240 kb on - strandat 4558.382 kb on + strand, within Xcc-8004.4790.1at 4558.383 kb on - strand, within Xcc-8004.4790.1at 4558.395 kb on + strand, within Xcc-8004.4790.1at 4558.395 kb on + strand, within Xcc-8004.4790.1at 4558.396 kb on - strand, within Xcc-8004.4790.1at 4558.396 kb on - strand, within Xcc-8004.4790.1at 4558.438 kb on - strand, within Xcc-8004.4790.1at 4558.438 kb on - strand, within Xcc-8004.4790.1at 4558.475 kb on + strand, within Xcc-8004.4790.1at 4558.677 kb on + strand, within Xcc-8004.4790.1at 4559.558 kb on + strandat 4559.558 kb on + strandat 4559.559 kb on - strandat 4559.687 kb on + strandat 4559.688 kb on - strandat 4559.688 kb on - strandat 4559.688 kb on - strandat 4559.695 kb on + strandat 4559.696 kb on - strandat 4559.722 kb on + strandat 4559.722 kb on + strandat 4559.723 kb on - strandat 4559.723 kb on - strandat 4559.755 kb on + strandat 4559.755 kb on + strandat 4559.755 kb on + strandat 4559.755 kb on + strandat 4559.756 kb on - strandat 4559.756 kb on - strandat 4559.973 kb on + strand, within Xcc-8004.4791.1at 4559.973 kb on + strand, within Xcc-8004.4791.1at 4559.973 kb on + strand, within Xcc-8004.4791.1at 4559.974 kb on - strand, within Xcc-8004.4791.1at 4559.974 kb on - strand, within Xcc-8004.4791.1at 4559.974 kb on - strand, within Xcc-8004.4791.1at 4559.974 kb on - strand, within Xcc-8004.4791.1at 4560.129 kb on + strand, within Xcc-8004.4791.1at 4560.130 kb on - strand, within Xcc-8004.4791.1at 4560.130 kb on - strand, within Xcc-8004.4791.1at 4560.130 kb on - strand, within Xcc-8004.4791.1at 4560.192 kb on + strand, within Xcc-8004.4791.1at 4560.192 kb on + strand, within Xcc-8004.4791.1at 4560.192 kb on + strand, within Xcc-8004.4791.1at 4560.192 kb on + strand, within Xcc-8004.4791.1at 4560.192 kb on + strand, within Xcc-8004.4791.1at 4560.193 kb on - strand, within Xcc-8004.4791.1at 4560.193 kb on - strand, within Xcc-8004.4791.1at 4560.216 kb on + strand, within Xcc-8004.4791.1at 4560.216 kb on + strand, within Xcc-8004.4791.1at 4560.217 kb on - strand, within Xcc-8004.4791.1at 4560.217 kb on - strand, within Xcc-8004.4791.1at 4560.217 kb on - strand, within Xcc-8004.4791.1at 4560.225 kb on + strand, within Xcc-8004.4791.1at 4560.225 kb on + strand, within Xcc-8004.4791.1at 4560.225 kb on + strand, within Xcc-8004.4791.1at 4560.225 kb on + strand, within Xcc-8004.4791.1at 4560.226 kb on - strand, within Xcc-8004.4791.1at 4560.226 kb on - strand, within Xcc-8004.4791.1at 4560.226 kb on - strand, within Xcc-8004.4791.1at 4560.226 kb on - strand, within Xcc-8004.4791.1at 4560.226 kb on - strand, within Xcc-8004.4791.1at 4560.273 kb on + strand, within Xcc-8004.4791.1at 4560.274 kb on - strand, within Xcc-8004.4791.1at 4560.274 kb on - strand, within Xcc-8004.4791.1at 4560.447 kb on + strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,557,235 - -2.0
4,557,235 - +0.9
4,557,235 - -0.7
4,557,322 + Xcc-8004.4789.1 0.11 -1.4
4,557,323 - Xcc-8004.4789.1 0.11 -2.9
4,557,324 + Xcc-8004.4789.1 0.11 +0.5
4,557,324 + Xcc-8004.4789.1 0.11 -0.3
4,557,324 + Xcc-8004.4789.1 0.11 -1.6
4,557,324 + Xcc-8004.4789.1 0.11 +4.1
4,557,324 + Xcc-8004.4789.1 0.11 +0.6
4,557,324 + Xcc-8004.4789.1 0.11 +0.6
4,557,324 + Xcc-8004.4789.1 0.11 -1.8
4,557,325 - Xcc-8004.4789.1 0.11 -0.7
4,557,435 + Xcc-8004.4789.1 0.25 +0.6
4,557,436 - Xcc-8004.4789.1 0.25 -0.0
4,557,586 - Xcc-8004.4789.1 0.43 +1.0
4,557,586 - Xcc-8004.4789.1 0.43 -1.5
4,557,586 - Xcc-8004.4789.1 0.43 +0.7
4,557,606 + Xcc-8004.4789.1 0.46 +0.6
4,557,784 - Xcc-8004.4789.1 0.68 +1.3
4,557,891 + Xcc-8004.4789.1 0.81 -2.4
4,557,891 + Xcc-8004.4789.1 0.81 -0.3
4,557,891 + Xcc-8004.4789.1 0.81 -0.9
4,557,892 - Xcc-8004.4789.1 0.81 +0.9
4,557,892 - Xcc-8004.4789.1 0.81 -2.2
4,557,994 - -1.8
4,558,060 - -2.0
4,558,086 + +1.6
4,558,086 + +1.0
4,558,087 - -1.0
4,558,087 - -1.4
4,558,087 - -2.2
4,558,239 + -0.8
4,558,239 + -1.1
4,558,240 - -2.0
4,558,382 + Xcc-8004.4790.1 0.12 +0.2
4,558,383 - Xcc-8004.4790.1 0.12 -1.1
4,558,395 + Xcc-8004.4790.1 0.13 +0.1
4,558,395 + Xcc-8004.4790.1 0.13 -1.0
4,558,396 - Xcc-8004.4790.1 0.13 -1.6
4,558,396 - Xcc-8004.4790.1 0.13 -1.4
4,558,438 - Xcc-8004.4790.1 0.16 +0.2
4,558,438 - Xcc-8004.4790.1 0.16 -1.8
4,558,475 + Xcc-8004.4790.1 0.19 -1.5
4,558,677 + Xcc-8004.4790.1 0.35 -0.7
4,559,558 + -1.1
4,559,558 + -2.0
4,559,559 - +0.9
4,559,687 + -0.1
4,559,688 - -1.1
4,559,688 - +0.6
4,559,688 - -1.8
4,559,695 + +0.0
4,559,696 - +0.6
4,559,722 + -2.8
4,559,722 + -0.9
4,559,723 - -1.1
4,559,723 - +0.2
4,559,755 + +0.1
4,559,755 + -0.7
4,559,755 + -0.4
4,559,755 + +1.6
4,559,756 - +1.1
4,559,756 - +0.8
4,559,973 + Xcc-8004.4791.1 0.15 +0.6
4,559,973 + Xcc-8004.4791.1 0.15 +0.7
4,559,973 + Xcc-8004.4791.1 0.15 +0.4
4,559,974 - Xcc-8004.4791.1 0.15 -0.8
4,559,974 - Xcc-8004.4791.1 0.15 -2.5
4,559,974 - Xcc-8004.4791.1 0.15 +1.4
4,559,974 - Xcc-8004.4791.1 0.15 +0.8
4,560,129 + Xcc-8004.4791.1 0.28 -1.7
4,560,130 - Xcc-8004.4791.1 0.28 +0.2
4,560,130 - Xcc-8004.4791.1 0.28 -0.4
4,560,130 - Xcc-8004.4791.1 0.28 +0.2
4,560,192 + Xcc-8004.4791.1 0.33 -0.7
4,560,192 + Xcc-8004.4791.1 0.33 +1.7
4,560,192 + Xcc-8004.4791.1 0.33 -0.6
4,560,192 + Xcc-8004.4791.1 0.33 +0.3
4,560,192 + Xcc-8004.4791.1 0.33 -1.8
4,560,193 - Xcc-8004.4791.1 0.33 -0.7
4,560,193 - Xcc-8004.4791.1 0.33 -1.4
4,560,216 + Xcc-8004.4791.1 0.35 +0.3
4,560,216 + Xcc-8004.4791.1 0.35 -0.4
4,560,217 - Xcc-8004.4791.1 0.35 +1.4
4,560,217 - Xcc-8004.4791.1 0.35 -0.1
4,560,217 - Xcc-8004.4791.1 0.35 -0.5
4,560,225 + Xcc-8004.4791.1 0.35 +0.0
4,560,225 + Xcc-8004.4791.1 0.35 +0.9
4,560,225 + Xcc-8004.4791.1 0.35 -0.6
4,560,225 + Xcc-8004.4791.1 0.35 -2.3
4,560,226 - Xcc-8004.4791.1 0.35 +0.2
4,560,226 - Xcc-8004.4791.1 0.35 +0.0
4,560,226 - Xcc-8004.4791.1 0.35 +0.5
4,560,226 - Xcc-8004.4791.1 0.35 +0.4
4,560,226 - Xcc-8004.4791.1 0.35 -0.2
4,560,273 + Xcc-8004.4791.1 0.39 -0.4
4,560,274 - Xcc-8004.4791.1 0.39 +0.3
4,560,274 - Xcc-8004.4791.1 0.39 +1.2
4,560,447 + Xcc-8004.4791.1 0.53 -0.8
4,560,448 - Xcc-8004.4791.1 0.53 +0.8
4,560,448 - Xcc-8004.4791.1 0.53 -0.9
4,560,448 - Xcc-8004.4791.1 0.53 -2.1
4,560,448 - Xcc-8004.4791.1 0.53 -1.2
4,560,448 - Xcc-8004.4791.1 0.53 -1.6
4,560,448 - Xcc-8004.4791.1 0.53 -0.7
4,560,448 - Xcc-8004.4791.1 0.53 -1.1
4,560,448 - Xcc-8004.4791.1 0.53 -1.5
4,560,448 - Xcc-8004.4791.1 0.53 -1.7

Or see this region's nucleotide sequence