Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4787.1 and Xcc-8004.4788.1 are separated by 71 nucleotides Xcc-8004.4788.1 and Xcc-8004.4789.1 are separated by 104 nucleotides
Xcc-8004.4787.1: Xcc-8004.4787.1 - FIG01212471: hypothetical protein, at 4,556,263 to 4,556,760
Xcc-8004.4787.1
Xcc-8004.4788.1: Xcc-8004.4788.1 - FIG01210406: hypothetical protein, at 4,556,832 to 4,557,128
Xcc-8004.4788.1
Xcc-8004.4789.1: Xcc-8004.4789.1 - NADPH dependent preQ0 reductase (EC 1.7.1.13), at 4,557,233 to 4,558,048
Xcc-8004.4789.1
Position (kb) 4556
4557
4558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4555.834 kb on - strand at 4556.044 kb on - strand at 4556.264 kb on + strand at 4556.264 kb on + strand at 4556.264 kb on + strand at 4556.265 kb on - strand at 4556.265 kb on - strand at 4556.265 kb on - strand at 4556.265 kb on - strand at 4556.269 kb on - strand at 4556.786 kb on - strand at 4557.036 kb on + strand, within Xcc-8004.4788.1 at 4557.180 kb on + strand at 4557.181 kb on - strand at 4557.235 kb on - strand at 4557.235 kb on - strand at 4557.235 kb on - strand at 4557.322 kb on + strand, within Xcc-8004.4789.1 at 4557.323 kb on - strand, within Xcc-8004.4789.1 at 4557.324 kb on + strand, within Xcc-8004.4789.1 at 4557.324 kb on + strand, within Xcc-8004.4789.1 at 4557.324 kb on + strand, within Xcc-8004.4789.1 at 4557.324 kb on + strand, within Xcc-8004.4789.1 at 4557.324 kb on + strand, within Xcc-8004.4789.1 at 4557.324 kb on + strand, within Xcc-8004.4789.1 at 4557.324 kb on + strand, within Xcc-8004.4789.1 at 4557.325 kb on - strand, within Xcc-8004.4789.1 at 4557.435 kb on + strand, within Xcc-8004.4789.1 at 4557.436 kb on - strand, within Xcc-8004.4789.1 at 4557.586 kb on - strand, within Xcc-8004.4789.1 at 4557.586 kb on - strand, within Xcc-8004.4789.1 at 4557.586 kb on - strand, within Xcc-8004.4789.1 at 4557.606 kb on + strand, within Xcc-8004.4789.1 at 4557.784 kb on - strand, within Xcc-8004.4789.1 at 4557.891 kb on + strand, within Xcc-8004.4789.1 at 4557.891 kb on + strand, within Xcc-8004.4789.1 at 4557.891 kb on + strand, within Xcc-8004.4789.1 at 4557.892 kb on - strand, within Xcc-8004.4789.1 at 4557.892 kb on - strand, within Xcc-8004.4789.1 at 4557.994 kb on - strand at 4558.060 kb on - strand at 4558.086 kb on + strand at 4558.086 kb on + strand at 4558.087 kb on - strand at 4558.087 kb on - strand at 4558.087 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 4,555,834 - -2.0 4,556,044 - -0.9 4,556,264 + -0.7 4,556,264 + +0.5 4,556,264 + -2.1 4,556,265 - -0.1 4,556,265 - -0.5 4,556,265 - -0.0 4,556,265 - +2.6 4,556,269 - +0.2 4,556,786 - -0.5 4,557,036 + Xcc-8004.4788.1 0.69 -3.4 4,557,180 + -1.7 4,557,181 - +0.7 4,557,235 - -2.0 4,557,235 - +0.9 4,557,235 - -0.7 4,557,322 + Xcc-8004.4789.1 0.11 -1.4 4,557,323 - Xcc-8004.4789.1 0.11 -2.9 4,557,324 + Xcc-8004.4789.1 0.11 +0.5 4,557,324 + Xcc-8004.4789.1 0.11 -0.3 4,557,324 + Xcc-8004.4789.1 0.11 -1.6 4,557,324 + Xcc-8004.4789.1 0.11 +4.1 4,557,324 + Xcc-8004.4789.1 0.11 +0.6 4,557,324 + Xcc-8004.4789.1 0.11 +0.6 4,557,324 + Xcc-8004.4789.1 0.11 -1.8 4,557,325 - Xcc-8004.4789.1 0.11 -0.7 4,557,435 + Xcc-8004.4789.1 0.25 +0.6 4,557,436 - Xcc-8004.4789.1 0.25 -0.0 4,557,586 - Xcc-8004.4789.1 0.43 +1.0 4,557,586 - Xcc-8004.4789.1 0.43 -1.5 4,557,586 - Xcc-8004.4789.1 0.43 +0.7 4,557,606 + Xcc-8004.4789.1 0.46 +0.6 4,557,784 - Xcc-8004.4789.1 0.68 +1.3 4,557,891 + Xcc-8004.4789.1 0.81 -2.4 4,557,891 + Xcc-8004.4789.1 0.81 -0.3 4,557,891 + Xcc-8004.4789.1 0.81 -0.9 4,557,892 - Xcc-8004.4789.1 0.81 +0.9 4,557,892 - Xcc-8004.4789.1 0.81 -2.2 4,557,994 - -1.8 4,558,060 - -2.0 4,558,086 + +1.6 4,558,086 + +1.0 4,558,087 - -1.0 4,558,087 - -1.4 4,558,087 - -2.2
Or see this region's nucleotide sequence