Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4716.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4714.1 and Xcc-8004.4715.1 are separated by 170 nucleotidesXcc-8004.4715.1 and Xcc-8004.4716.1 are separated by 40 nucleotidesXcc-8004.4716.1 and Xcc-8004.4717.1 are separated by 21 nucleotides Xcc-8004.4714.1: Xcc-8004.4714.1 - putative; ORF located using Glimmer/Genemark, at 4,491,579 to 4,492,151 Xcc-8004.4714.1 Xcc-8004.4715.1: Xcc-8004.4715.1 - FIG00353010: hypothetical protein, at 4,492,322 to 4,492,798 Xcc-8004.4715.1 Xcc-8004.4716.1: Xcc-8004.4716.1 - Transcriptional regulator, LysR family, at 4,492,839 to 4,492,982 Xcc-8004.4716.1 Xcc-8004.4717.1: Xcc-8004.4717.1 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 4,493,004 to 4,494,509 Xcc-8004.4717.1 Position (kb) 4492 4493Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4491.842 kb on - strand, within Xcc-8004.4714.1at 4491.842 kb on - strand, within Xcc-8004.4714.1at 4492.006 kb on + strand, within Xcc-8004.4714.1at 4492.006 kb on + strand, within Xcc-8004.4714.1at 4492.006 kb on + strand, within Xcc-8004.4714.1at 4492.006 kb on + strand, within Xcc-8004.4714.1at 4492.007 kb on - strand, within Xcc-8004.4714.1at 4492.007 kb on - strand, within Xcc-8004.4714.1at 4492.007 kb on - strand, within Xcc-8004.4714.1at 4492.007 kb on - strand, within Xcc-8004.4714.1at 4492.007 kb on - strand, within Xcc-8004.4714.1at 4492.007 kb on - strand, within Xcc-8004.4714.1at 4492.030 kb on + strand, within Xcc-8004.4714.1at 4492.030 kb on + strand, within Xcc-8004.4714.1at 4492.090 kb on + strand, within Xcc-8004.4714.1at 4492.091 kb on - strand, within Xcc-8004.4714.1at 4492.091 kb on - strand, within Xcc-8004.4714.1at 4492.091 kb on - strand, within Xcc-8004.4714.1at 4492.091 kb on - strand, within Xcc-8004.4714.1at 4492.091 kb on - strand, within Xcc-8004.4714.1at 4492.215 kb on + strandat 4492.216 kb on - strandat 4492.280 kb on - strandat 4492.421 kb on + strand, within Xcc-8004.4715.1at 4492.422 kb on - strand, within Xcc-8004.4715.1at 4492.422 kb on - strand, within Xcc-8004.4715.1at 4492.422 kb on - strand, within Xcc-8004.4715.1at 4492.629 kb on - strand, within Xcc-8004.4715.1at 4492.629 kb on - strand, within Xcc-8004.4715.1at 4492.902 kb on + strand, within Xcc-8004.4716.1at 4493.051 kb on - strandat 4493.113 kb on + strandat 4493.113 kb on + strandat 4493.113 kb on + strandat 4493.113 kb on + strandat 4493.113 kb on + strandat 4493.113 kb on + strandat 4493.113 kb on + strandat 4493.114 kb on - strandat 4493.117 kb on + strandat 4493.117 kb on + strandat 4493.117 kb on + strandat 4493.117 kb on + strandat 4493.117 kb on + strandat 4493.117 kb on + strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.118 kb on - strandat 4493.119 kb on + strandat 4493.119 kb on + strandat 4493.120 kb on - strandat 4493.187 kb on - strand, within Xcc-8004.4717.1at 4493.244 kb on + strand, within Xcc-8004.4717.1at 4493.360 kb on - strand, within Xcc-8004.4717.1at 4493.360 kb on - strand, within Xcc-8004.4717.1at 4493.362 kb on + strand, within Xcc-8004.4717.1at 4493.363 kb on - strand, within Xcc-8004.4717.1at 4493.371 kb on + strand, within Xcc-8004.4717.1at 4493.528 kb on - strand, within Xcc-8004.4717.1at 4493.569 kb on - strand, within Xcc-8004.4717.1at 4493.582 kb on + strand, within Xcc-8004.4717.1at 4493.653 kb on + strand, within Xcc-8004.4717.1at 4493.695 kb on - strand, within Xcc-8004.4717.1at 4493.725 kb on + strand, within Xcc-8004.4717.1at 4493.731 kb on + strand, within Xcc-8004.4717.1at 4493.731 kb on + strand, within Xcc-8004.4717.1at 4493.732 kb on - strand, within Xcc-8004.4717.1at 4493.732 kb on - strand, within Xcc-8004.4717.1at 4493.735 kb on + strand, within Xcc-8004.4717.1at 4493.735 kb on + strand, within Xcc-8004.4717.1at 4493.735 kb on + strand, within Xcc-8004.4717.1at 4493.735 kb on + strand, within Xcc-8004.4717.1at 4493.736 kb on - strand, within Xcc-8004.4717.1at 4493.797 kb on + strand, within Xcc-8004.4717.1at 4493.797 kb on + strand, within Xcc-8004.4717.1at 4493.798 kb on - strand, within Xcc-8004.4717.1at 4493.929 kb on + strand, within Xcc-8004.4717.1at 4493.930 kb on - strand, within Xcc-8004.4717.1at 4493.937 kb on - strand, within Xcc-8004.4717.1at 4493.945 kb on - strand, within Xcc-8004.4717.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,491,842 - Xcc-8004.4714.1 0.46 +2.9
4,491,842 - Xcc-8004.4714.1 0.46 -1.8
4,492,006 + Xcc-8004.4714.1 0.75 +2.1
4,492,006 + Xcc-8004.4714.1 0.75 +0.2
4,492,006 + Xcc-8004.4714.1 0.75 +2.5
4,492,006 + Xcc-8004.4714.1 0.75 +0.7
4,492,007 - Xcc-8004.4714.1 0.75 +0.3
4,492,007 - Xcc-8004.4714.1 0.75 -0.5
4,492,007 - Xcc-8004.4714.1 0.75 +0.1
4,492,007 - Xcc-8004.4714.1 0.75 +0.2
4,492,007 - Xcc-8004.4714.1 0.75 -0.2
4,492,007 - Xcc-8004.4714.1 0.75 +0.4
4,492,030 + Xcc-8004.4714.1 0.79 -0.3
4,492,030 + Xcc-8004.4714.1 0.79 -2.5
4,492,090 + Xcc-8004.4714.1 0.89 -0.1
4,492,091 - Xcc-8004.4714.1 0.89 +0.7
4,492,091 - Xcc-8004.4714.1 0.89 +1.7
4,492,091 - Xcc-8004.4714.1 0.89 +0.9
4,492,091 - Xcc-8004.4714.1 0.89 -1.8
4,492,091 - Xcc-8004.4714.1 0.89 +1.0
4,492,215 + -0.0
4,492,216 - +0.6
4,492,280 - +0.2
4,492,421 + Xcc-8004.4715.1 0.21 -0.3
4,492,422 - Xcc-8004.4715.1 0.21 +0.6
4,492,422 - Xcc-8004.4715.1 0.21 +4.1
4,492,422 - Xcc-8004.4715.1 0.21 +0.1
4,492,629 - Xcc-8004.4715.1 0.64 -0.9
4,492,629 - Xcc-8004.4715.1 0.64 +0.8
4,492,902 + Xcc-8004.4716.1 0.44 +1.6
4,493,051 - -2.6
4,493,113 + +1.3
4,493,113 + +0.6
4,493,113 + -1.2
4,493,113 + +2.2
4,493,113 + +0.3
4,493,113 + +0.1
4,493,113 + +0.2
4,493,114 - +0.7
4,493,117 + +0.1
4,493,117 + -1.7
4,493,117 + +0.2
4,493,117 + +0.7
4,493,117 + +2.3
4,493,117 + +1.0
4,493,118 - +0.7
4,493,118 - -0.4
4,493,118 - +2.0
4,493,118 - +1.6
4,493,118 - +0.7
4,493,118 - +1.1
4,493,118 - +1.6
4,493,118 - -1.8
4,493,118 - +1.3
4,493,118 - -0.0
4,493,118 - +1.2
4,493,118 - +0.7
4,493,118 - +0.0
4,493,118 - +1.7
4,493,118 - -2.5
4,493,118 - -2.1
4,493,119 + +0.1
4,493,119 + +1.2
4,493,120 - +0.2
4,493,187 - Xcc-8004.4717.1 0.12 -0.4
4,493,244 + Xcc-8004.4717.1 0.16 -1.9
4,493,360 - Xcc-8004.4717.1 0.24 -0.9
4,493,360 - Xcc-8004.4717.1 0.24 +0.9
4,493,362 + Xcc-8004.4717.1 0.24 +1.1
4,493,363 - Xcc-8004.4717.1 0.24 -0.7
4,493,371 + Xcc-8004.4717.1 0.24 -1.3
4,493,528 - Xcc-8004.4717.1 0.35 -1.1
4,493,569 - Xcc-8004.4717.1 0.38 -0.8
4,493,582 + Xcc-8004.4717.1 0.38 -0.2
4,493,653 + Xcc-8004.4717.1 0.43 -1.1
4,493,695 - Xcc-8004.4717.1 0.46 +0.2
4,493,725 + Xcc-8004.4717.1 0.48 -0.9
4,493,731 + Xcc-8004.4717.1 0.48 +0.5
4,493,731 + Xcc-8004.4717.1 0.48 -0.3
4,493,732 - Xcc-8004.4717.1 0.48 -0.6
4,493,732 - Xcc-8004.4717.1 0.48 -1.5
4,493,735 + Xcc-8004.4717.1 0.49 +0.6
4,493,735 + Xcc-8004.4717.1 0.49 -1.1
4,493,735 + Xcc-8004.4717.1 0.49 -0.2
4,493,735 + Xcc-8004.4717.1 0.49 -1.7
4,493,736 - Xcc-8004.4717.1 0.49 -0.7
4,493,797 + Xcc-8004.4717.1 0.53 -0.8
4,493,797 + Xcc-8004.4717.1 0.53 -1.0
4,493,798 - Xcc-8004.4717.1 0.53 +1.0
4,493,929 + Xcc-8004.4717.1 0.61 +0.1
4,493,930 - Xcc-8004.4717.1 0.61 -0.4
4,493,937 - Xcc-8004.4717.1 0.62 -0.4
4,493,945 - Xcc-8004.4717.1 0.62 +0.3

Or see this region's nucleotide sequence