Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4560.1 and Xcc-8004.4561.1 are separated by 4 nucleotides Xcc-8004.4561.1 and Xcc-8004.4562.1 are separated by 44 nucleotides Xcc-8004.4562.1 and Xcc-8004.4563.1 overlap by 7 nucleotides
Xcc-8004.4560.1: Xcc-8004.4560.1 - Histidine kinase/response regulator hybrid protein, at 4,356,158 to 4,357,585
Xcc-8004.4560.1
Xcc-8004.4561.1: Xcc-8004.4561.1 - Sensor histidine kinase, at 4,357,590 to 4,358,831
Xcc-8004.4561.1
Xcc-8004.4562.1: Xcc-8004.4562.1 - Mobile element protein, at 4,358,876 to 4,359,139
Xcc-8004.4562.1
Xcc-8004.4563.1: Xcc-8004.4563.1 - Mobile element protein, at 4,359,133 to 4,359,978
Xcc-8004.4563.1
Position (kb) 4357
4358
4359 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4356.932 kb on + strand, within Xcc-8004.4560.1 at 4356.933 kb on - strand, within Xcc-8004.4560.1 at 4356.933 kb on - strand, within Xcc-8004.4560.1 at 4356.933 kb on - strand, within Xcc-8004.4560.1 at 4356.933 kb on - strand, within Xcc-8004.4560.1 at 4357.041 kb on + strand, within Xcc-8004.4560.1 at 4357.041 kb on + strand, within Xcc-8004.4560.1 at 4357.065 kb on - strand, within Xcc-8004.4560.1 at 4357.176 kb on - strand, within Xcc-8004.4560.1 at 4357.176 kb on - strand, within Xcc-8004.4560.1 at 4357.176 kb on - strand, within Xcc-8004.4560.1 at 4357.178 kb on + strand, within Xcc-8004.4560.1 at 4357.179 kb on - strand, within Xcc-8004.4560.1 at 4357.342 kb on + strand, within Xcc-8004.4560.1 at 4357.343 kb on - strand, within Xcc-8004.4560.1 at 4357.343 kb on - strand, within Xcc-8004.4560.1 at 4357.531 kb on - strand at 4357.531 kb on - strand at 4357.548 kb on - strand at 4357.584 kb on - strand at 4357.678 kb on - strand at 4357.813 kb on - strand, within Xcc-8004.4561.1 at 4357.828 kb on - strand, within Xcc-8004.4561.1 at 4357.843 kb on - strand, within Xcc-8004.4561.1 at 4357.877 kb on - strand, within Xcc-8004.4561.1 at 4358.199 kb on + strand, within Xcc-8004.4561.1 at 4358.199 kb on + strand, within Xcc-8004.4561.1 at 4358.200 kb on - strand, within Xcc-8004.4561.1 at 4358.200 kb on - strand, within Xcc-8004.4561.1 at 4358.796 kb on + strand at 4358.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 4,356,932 + Xcc-8004.4560.1 0.54 +2.1 4,356,933 - Xcc-8004.4560.1 0.54 -1.0 4,356,933 - Xcc-8004.4560.1 0.54 -0.9 4,356,933 - Xcc-8004.4560.1 0.54 -1.3 4,356,933 - Xcc-8004.4560.1 0.54 -0.0 4,357,041 + Xcc-8004.4560.1 0.62 +1.7 4,357,041 + Xcc-8004.4560.1 0.62 -1.1 4,357,065 - Xcc-8004.4560.1 0.64 -0.1 4,357,176 - Xcc-8004.4560.1 0.71 -0.7 4,357,176 - Xcc-8004.4560.1 0.71 +0.7 4,357,176 - Xcc-8004.4560.1 0.71 -0.5 4,357,178 + Xcc-8004.4560.1 0.71 -0.0 4,357,179 - Xcc-8004.4560.1 0.71 +0.0 4,357,342 + Xcc-8004.4560.1 0.83 -1.6 4,357,343 - Xcc-8004.4560.1 0.83 -1.3 4,357,343 - Xcc-8004.4560.1 0.83 +2.0 4,357,531 - +1.6 4,357,531 - +1.6 4,357,548 - +1.9 4,357,584 - -0.1 4,357,678 - -0.0 4,357,813 - Xcc-8004.4561.1 0.18 -0.5 4,357,828 - Xcc-8004.4561.1 0.19 +0.3 4,357,843 - Xcc-8004.4561.1 0.20 +2.8 4,357,877 - Xcc-8004.4561.1 0.23 -0.2 4,358,199 + Xcc-8004.4561.1 0.49 +3.2 4,358,199 + Xcc-8004.4561.1 0.49 -0.2 4,358,200 - Xcc-8004.4561.1 0.49 -0.0 4,358,200 - Xcc-8004.4561.1 0.49 -2.7 4,358,796 + +0.9 4,358,830 - +1.4
Or see this region's nucleotide sequence