Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4545.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4544.1 and Xcc-8004.4545.1 are separated by 523 nucleotidesXcc-8004.4545.1 and Xcc-8004.4546.1 are separated by 342 nucleotides Xcc-8004.4544.1: Xcc-8004.4544.1 - Copper resistance protein B, at 4,340,683 to 4,342,158 Xcc-8004.4544.1 Xcc-8004.4545.1: Xcc-8004.4545.1 - Lactoylglutathione lyase (EC 4.4.1.5), at 4,342,682 to 4,343,206 Xcc-8004.4545.1 Xcc-8004.4546.1: Xcc-8004.4546.1 - FIG01210884: hypothetical protein, at 4,343,549 to 4,344,307 Xcc-8004.4546.1 Position (kb) 4342 4343 4344Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4341.706 kb on + strand, within Xcc-8004.4544.1at 4341.706 kb on + strand, within Xcc-8004.4544.1at 4341.707 kb on - strand, within Xcc-8004.4544.1at 4341.707 kb on - strand, within Xcc-8004.4544.1at 4341.817 kb on + strand, within Xcc-8004.4544.1at 4341.818 kb on - strand, within Xcc-8004.4544.1at 4341.844 kb on + strand, within Xcc-8004.4544.1at 4341.844 kb on + strand, within Xcc-8004.4544.1at 4341.845 kb on - strand, within Xcc-8004.4544.1at 4341.845 kb on - strand, within Xcc-8004.4544.1at 4341.848 kb on + strand, within Xcc-8004.4544.1at 4341.848 kb on + strand, within Xcc-8004.4544.1at 4341.848 kb on + strand, within Xcc-8004.4544.1at 4341.848 kb on + strand, within Xcc-8004.4544.1at 4341.848 kb on + strand, within Xcc-8004.4544.1at 4341.849 kb on - strand, within Xcc-8004.4544.1at 4341.890 kb on - strand, within Xcc-8004.4544.1at 4341.890 kb on - strand, within Xcc-8004.4544.1at 4342.018 kb on + strandat 4342.045 kb on + strandat 4342.045 kb on + strandat 4342.045 kb on + strandat 4342.045 kb on + strandat 4342.046 kb on - strandat 4342.046 kb on - strandat 4342.046 kb on - strandat 4342.046 kb on - strandat 4342.046 kb on - strandat 4342.046 kb on - strandat 4342.046 kb on - strandat 4342.047 kb on + strandat 4342.047 kb on + strandat 4342.048 kb on - strandat 4342.367 kb on + strandat 4342.368 kb on - strandat 4342.368 kb on - strandat 4342.393 kb on + strandat 4342.393 kb on + strandat 4342.394 kb on - strandat 4342.394 kb on - strandat 4342.394 kb on - strandat 4342.467 kb on + strandat 4342.468 kb on - strandat 4342.471 kb on + strandat 4342.471 kb on + strandat 4342.472 kb on - strandat 4342.472 kb on - strandat 4342.487 kb on + strandat 4342.487 kb on + strandat 4342.541 kb on + strandat 4342.542 kb on - strandat 4342.557 kb on + strandat 4342.802 kb on + strand, within Xcc-8004.4545.1at 4342.802 kb on + strand, within Xcc-8004.4545.1at 4342.803 kb on - strand, within Xcc-8004.4545.1at 4342.803 kb on - strand, within Xcc-8004.4545.1at 4342.812 kb on + strand, within Xcc-8004.4545.1at 4342.868 kb on + strand, within Xcc-8004.4545.1at 4342.868 kb on + strand, within Xcc-8004.4545.1at 4342.869 kb on - strand, within Xcc-8004.4545.1at 4342.869 kb on - strand, within Xcc-8004.4545.1at 4342.869 kb on - strand, within Xcc-8004.4545.1at 4343.205 kb on - strandat 4343.205 kb on - strandat 4343.369 kb on + strandat 4343.439 kb on + strandat 4343.533 kb on + strandat 4343.533 kb on + strandat 4343.533 kb on + strandat 4343.534 kb on - strandat 4343.534 kb on - strandat 4343.583 kb on + strandat 4343.584 kb on - strandat 4343.613 kb on - strandat 4343.651 kb on + strand, within Xcc-8004.4546.1at 4343.652 kb on - strand, within Xcc-8004.4546.1at 4343.677 kb on + strand, within Xcc-8004.4546.1at 4343.681 kb on + strand, within Xcc-8004.4546.1at 4343.682 kb on - strand, within Xcc-8004.4546.1at 4343.720 kb on + strand, within Xcc-8004.4546.1at 4343.721 kb on - strand, within Xcc-8004.4546.1at 4343.721 kb on - strand, within Xcc-8004.4546.1at 4343.723 kb on + strand, within Xcc-8004.4546.1at 4343.723 kb on + strand, within Xcc-8004.4546.1at 4343.723 kb on + strand, within Xcc-8004.4546.1at 4343.724 kb on - strand, within Xcc-8004.4546.1at 4343.724 kb on - strand, within Xcc-8004.4546.1at 4343.724 kb on - strand, within Xcc-8004.4546.1at 4343.724 kb on - strand, within Xcc-8004.4546.1at 4343.724 kb on - strand, within Xcc-8004.4546.1at 4343.879 kb on + strand, within Xcc-8004.4546.1at 4343.879 kb on + strand, within Xcc-8004.4546.1at 4343.879 kb on + strand, within Xcc-8004.4546.1at 4343.879 kb on + strand, within Xcc-8004.4546.1at 4343.879 kb on + strand, within Xcc-8004.4546.1at 4343.880 kb on - strand, within Xcc-8004.4546.1at 4343.880 kb on - strand, within Xcc-8004.4546.1at 4343.880 kb on - strand, within Xcc-8004.4546.1at 4343.932 kb on + strand, within Xcc-8004.4546.1at 4343.933 kb on - strand, within Xcc-8004.4546.1at 4343.933 kb on - strand, within Xcc-8004.4546.1at 4344.007 kb on - strand, within Xcc-8004.4546.1at 4344.020 kb on + strand, within Xcc-8004.4546.1at 4344.020 kb on + strand, within Xcc-8004.4546.1at 4344.020 kb on + strand, within Xcc-8004.4546.1at 4344.020 kb on + strand, within Xcc-8004.4546.1at 4344.020 kb on + strand, within Xcc-8004.4546.1at 4344.021 kb on - strand, within Xcc-8004.4546.1at 4344.080 kb on + strand, within Xcc-8004.4546.1at 4344.080 kb on + strand, within Xcc-8004.4546.1at 4344.080 kb on + strand, within Xcc-8004.4546.1at 4344.080 kb on + strand, within Xcc-8004.4546.1at 4344.080 kb on + strand, within Xcc-8004.4546.1at 4344.081 kb on - strand, within Xcc-8004.4546.1at 4344.081 kb on - strand, within Xcc-8004.4546.1at 4344.081 kb on - strand, within Xcc-8004.4546.1at 4344.081 kb on - strand, within Xcc-8004.4546.1at 4344.081 kb on - strand, within Xcc-8004.4546.1at 4344.081 kb on - strand, within Xcc-8004.4546.1at 4344.081 kb on - strand, within Xcc-8004.4546.1at 4344.081 kb on - strand, within Xcc-8004.4546.1at 4344.082 kb on + strand, within Xcc-8004.4546.1at 4344.082 kb on + strand, within Xcc-8004.4546.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,341,706 + Xcc-8004.4544.1 0.69 +0.1
4,341,706 + Xcc-8004.4544.1 0.69 -0.7
4,341,707 - Xcc-8004.4544.1 0.69 +1.6
4,341,707 - Xcc-8004.4544.1 0.69 +0.7
4,341,817 + Xcc-8004.4544.1 0.77 -2.1
4,341,818 - Xcc-8004.4544.1 0.77 +0.3
4,341,844 + Xcc-8004.4544.1 0.79 -0.4
4,341,844 + Xcc-8004.4544.1 0.79 -0.9
4,341,845 - Xcc-8004.4544.1 0.79 -1.8
4,341,845 - Xcc-8004.4544.1 0.79 +0.1
4,341,848 + Xcc-8004.4544.1 0.79 -0.7
4,341,848 + Xcc-8004.4544.1 0.79 +0.3
4,341,848 + Xcc-8004.4544.1 0.79 +1.9
4,341,848 + Xcc-8004.4544.1 0.79 -0.9
4,341,848 + Xcc-8004.4544.1 0.79 -0.3
4,341,849 - Xcc-8004.4544.1 0.79 -1.9
4,341,890 - Xcc-8004.4544.1 0.82 +0.1
4,341,890 - Xcc-8004.4544.1 0.82 -1.5
4,342,018 + -0.7
4,342,045 + +0.6
4,342,045 + -1.3
4,342,045 + -1.7
4,342,045 + +1.1
4,342,046 - -0.5
4,342,046 - +0.8
4,342,046 - -0.2
4,342,046 - +0.5
4,342,046 - +2.1
4,342,046 - +1.7
4,342,046 - +0.1
4,342,047 + -0.7
4,342,047 + -1.0
4,342,048 - -0.2
4,342,367 + +0.4
4,342,368 - +0.5
4,342,368 - -0.3
4,342,393 + -1.1
4,342,393 + -0.4
4,342,394 - -2.3
4,342,394 - -1.4
4,342,394 - +1.0
4,342,467 + +2.1
4,342,468 - -0.2
4,342,471 + +0.0
4,342,471 + +0.1
4,342,472 - -0.9
4,342,472 - -2.2
4,342,487 + +1.7
4,342,487 + -0.0
4,342,541 + -0.6
4,342,542 - +1.5
4,342,557 + -1.9
4,342,802 + Xcc-8004.4545.1 0.23 +1.0
4,342,802 + Xcc-8004.4545.1 0.23 +1.8
4,342,803 - Xcc-8004.4545.1 0.23 +1.3
4,342,803 - Xcc-8004.4545.1 0.23 +0.5
4,342,812 + Xcc-8004.4545.1 0.25 +0.5
4,342,868 + Xcc-8004.4545.1 0.35 -1.5
4,342,868 + Xcc-8004.4545.1 0.35 +0.5
4,342,869 - Xcc-8004.4545.1 0.36 +1.4
4,342,869 - Xcc-8004.4545.1 0.36 +2.0
4,342,869 - Xcc-8004.4545.1 0.36 +1.1
4,343,205 - +1.4
4,343,205 - -1.8
4,343,369 + -1.9
4,343,439 + -2.3
4,343,533 + +0.3
4,343,533 + -0.5
4,343,533 + -1.2
4,343,534 - +2.6
4,343,534 - -3.3
4,343,583 + +1.1
4,343,584 - +0.6
4,343,613 - -1.5
4,343,651 + Xcc-8004.4546.1 0.13 -0.1
4,343,652 - Xcc-8004.4546.1 0.14 +0.8
4,343,677 + Xcc-8004.4546.1 0.17 -1.1
4,343,681 + Xcc-8004.4546.1 0.17 -0.3
4,343,682 - Xcc-8004.4546.1 0.18 +0.3
4,343,720 + Xcc-8004.4546.1 0.23 -0.4
4,343,721 - Xcc-8004.4546.1 0.23 +0.0
4,343,721 - Xcc-8004.4546.1 0.23 -0.5
4,343,723 + Xcc-8004.4546.1 0.23 -2.6
4,343,723 + Xcc-8004.4546.1 0.23 +0.3
4,343,723 + Xcc-8004.4546.1 0.23 +0.7
4,343,724 - Xcc-8004.4546.1 0.23 -0.1
4,343,724 - Xcc-8004.4546.1 0.23 +0.3
4,343,724 - Xcc-8004.4546.1 0.23 +0.4
4,343,724 - Xcc-8004.4546.1 0.23 +0.1
4,343,724 - Xcc-8004.4546.1 0.23 -0.6
4,343,879 + Xcc-8004.4546.1 0.43 +1.1
4,343,879 + Xcc-8004.4546.1 0.43 -1.3
4,343,879 + Xcc-8004.4546.1 0.43 +1.0
4,343,879 + Xcc-8004.4546.1 0.43 -0.1
4,343,879 + Xcc-8004.4546.1 0.43 +1.3
4,343,880 - Xcc-8004.4546.1 0.44 +0.2
4,343,880 - Xcc-8004.4546.1 0.44 +0.9
4,343,880 - Xcc-8004.4546.1 0.44 -0.6
4,343,932 + Xcc-8004.4546.1 0.50 -2.3
4,343,933 - Xcc-8004.4546.1 0.51 -1.4
4,343,933 - Xcc-8004.4546.1 0.51 +1.7
4,344,007 - Xcc-8004.4546.1 0.60 -0.1
4,344,020 + Xcc-8004.4546.1 0.62 -1.2
4,344,020 + Xcc-8004.4546.1 0.62 -1.4
4,344,020 + Xcc-8004.4546.1 0.62 +0.0
4,344,020 + Xcc-8004.4546.1 0.62 -0.8
4,344,020 + Xcc-8004.4546.1 0.62 +4.6
4,344,021 - Xcc-8004.4546.1 0.62 -2.5
4,344,080 + Xcc-8004.4546.1 0.70 +1.0
4,344,080 + Xcc-8004.4546.1 0.70 +1.1
4,344,080 + Xcc-8004.4546.1 0.70 +0.7
4,344,080 + Xcc-8004.4546.1 0.70 -0.2
4,344,080 + Xcc-8004.4546.1 0.70 +1.0
4,344,081 - Xcc-8004.4546.1 0.70 +0.6
4,344,081 - Xcc-8004.4546.1 0.70 +0.0
4,344,081 - Xcc-8004.4546.1 0.70 -1.2
4,344,081 - Xcc-8004.4546.1 0.70 -0.7
4,344,081 - Xcc-8004.4546.1 0.70 -1.3
4,344,081 - Xcc-8004.4546.1 0.70 +0.6
4,344,081 - Xcc-8004.4546.1 0.70 +0.7
4,344,081 - Xcc-8004.4546.1 0.70 +0.8
4,344,082 + Xcc-8004.4546.1 0.70 +0.6
4,344,082 + Xcc-8004.4546.1 0.70 -0.1

Or see this region's nucleotide sequence