Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4525.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4523.1 and Xcc-8004.4524.1 are separated by 169 nucleotidesXcc-8004.4524.1 and Xcc-8004.4525.1 are separated by 212 nucleotidesXcc-8004.4525.1 and Xcc-8004.4526.1 are separated by 43 nucleotides Xcc-8004.4523.1: Xcc-8004.4523.1 - Type II secretion system protein-like protein, at 4,322,066 to 4,323,199 Xcc-8004.4523.1 Xcc-8004.4524.1: Xcc-8004.4524.1 - hypothetical protein, at 4,323,369 to 4,323,506 Xcc-8004.4524.1 Xcc-8004.4525.1: Xcc-8004.4525.1 - Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18), at 4,323,719 to 4,324,393 Xcc-8004.4525.1 Xcc-8004.4526.1: Xcc-8004.4526.1 - Fumarylacetoacetate hydrolase family protein, at 4,324,437 to 4,325,426 Xcc-8004.4526.1 Position (kb) 4323 4324 4325Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4323.146 kb on + strandat 4323.147 kb on - strandat 4323.155 kb on + strandat 4323.155 kb on + strandat 4323.193 kb on + strandat 4323.193 kb on + strandat 4323.194 kb on - strandat 4323.194 kb on - strandat 4323.197 kb on + strandat 4323.198 kb on - strandat 4323.198 kb on - strandat 4323.217 kb on - strandat 4323.448 kb on + strand, within Xcc-8004.4524.1at 4323.448 kb on + strand, within Xcc-8004.4524.1at 4323.448 kb on + strand, within Xcc-8004.4524.1at 4323.448 kb on + strand, within Xcc-8004.4524.1at 4323.448 kb on + strand, within Xcc-8004.4524.1at 4323.448 kb on + strand, within Xcc-8004.4524.1at 4323.449 kb on - strand, within Xcc-8004.4524.1at 4323.449 kb on - strand, within Xcc-8004.4524.1at 4323.449 kb on - strand, within Xcc-8004.4524.1at 4323.449 kb on - strand, within Xcc-8004.4524.1at 4323.449 kb on - strand, within Xcc-8004.4524.1at 4323.449 kb on - strand, within Xcc-8004.4524.1at 4323.452 kb on + strand, within Xcc-8004.4524.1at 4323.452 kb on + strand, within Xcc-8004.4524.1at 4323.453 kb on - strand, within Xcc-8004.4524.1at 4323.453 kb on - strand, within Xcc-8004.4524.1at 4323.453 kb on - strand, within Xcc-8004.4524.1at 4323.453 kb on - strand, within Xcc-8004.4524.1at 4323.533 kb on + strandat 4323.533 kb on + strandat 4323.533 kb on + strandat 4323.534 kb on - strandat 4323.534 kb on - strandat 4323.534 kb on - strandat 4323.534 kb on - strandat 4323.615 kb on + strandat 4323.616 kb on - strandat 4323.616 kb on - strandat 4323.720 kb on + strandat 4323.721 kb on - strandat 4323.721 kb on - strandat 4323.810 kb on + strand, within Xcc-8004.4525.1at 4323.811 kb on - strand, within Xcc-8004.4525.1at 4323.846 kb on + strand, within Xcc-8004.4525.1at 4323.846 kb on + strand, within Xcc-8004.4525.1at 4323.847 kb on - strand, within Xcc-8004.4525.1at 4323.847 kb on - strand, within Xcc-8004.4525.1at 4323.847 kb on - strand, within Xcc-8004.4525.1at 4324.164 kb on + strand, within Xcc-8004.4525.1at 4324.165 kb on - strand, within Xcc-8004.4525.1at 4324.165 kb on - strand, within Xcc-8004.4525.1at 4324.165 kb on - strand, within Xcc-8004.4525.1at 4324.248 kb on + strand, within Xcc-8004.4525.1at 4324.248 kb on + strand, within Xcc-8004.4525.1at 4324.249 kb on - strand, within Xcc-8004.4525.1at 4324.305 kb on + strand, within Xcc-8004.4525.1at 4324.306 kb on - strand, within Xcc-8004.4525.1at 4324.338 kb on - strandat 4324.345 kb on - strandat 4324.366 kb on - strandat 4324.521 kb on + strandat 4324.521 kb on + strandat 4324.521 kb on + strandat 4324.521 kb on + strandat 4324.521 kb on + strandat 4324.522 kb on - strandat 4324.522 kb on - strandat 4324.522 kb on - strandat 4324.522 kb on - strandat 4324.522 kb on - strandat 4324.522 kb on - strandat 4324.522 kb on - strandat 4324.940 kb on + strand, within Xcc-8004.4526.1at 4324.940 kb on + strand, within Xcc-8004.4526.1at 4324.940 kb on + strand, within Xcc-8004.4526.1at 4324.940 kb on + strand, within Xcc-8004.4526.1at 4324.940 kb on + strand, within Xcc-8004.4526.1at 4324.941 kb on - strand, within Xcc-8004.4526.1at 4324.941 kb on - strand, within Xcc-8004.4526.1at 4325.062 kb on + strand, within Xcc-8004.4526.1at 4325.062 kb on + strand, within Xcc-8004.4526.1at 4325.062 kb on + strand, within Xcc-8004.4526.1at 4325.062 kb on + strand, within Xcc-8004.4526.1at 4325.063 kb on - strand, within Xcc-8004.4526.1at 4325.063 kb on - strand, within Xcc-8004.4526.1at 4325.063 kb on - strand, within Xcc-8004.4526.1at 4325.086 kb on + strand, within Xcc-8004.4526.1at 4325.086 kb on + strand, within Xcc-8004.4526.1at 4325.086 kb on + strand, within Xcc-8004.4526.1at 4325.086 kb on + strand, within Xcc-8004.4526.1at 4325.086 kb on + strand, within Xcc-8004.4526.1at 4325.086 kb on + strand, within Xcc-8004.4526.1at 4325.086 kb on + strand, within Xcc-8004.4526.1at 4325.086 kb on + strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.087 kb on - strand, within Xcc-8004.4526.1at 4325.104 kb on + strand, within Xcc-8004.4526.1at 4325.104 kb on + strand, within Xcc-8004.4526.1at 4325.104 kb on + strand, within Xcc-8004.4526.1at 4325.104 kb on + strand, within Xcc-8004.4526.1at 4325.104 kb on + strand, within Xcc-8004.4526.1at 4325.104 kb on + strand, within Xcc-8004.4526.1at 4325.105 kb on - strand, within Xcc-8004.4526.1at 4325.105 kb on - strand, within Xcc-8004.4526.1at 4325.105 kb on - strand, within Xcc-8004.4526.1at 4325.164 kb on + strand, within Xcc-8004.4526.1at 4325.165 kb on - strand, within Xcc-8004.4526.1at 4325.165 kb on - strand, within Xcc-8004.4526.1at 4325.165 kb on - strand, within Xcc-8004.4526.1at 4325.189 kb on - strand, within Xcc-8004.4526.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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4,323,146 + -1.7
4,323,147 - -0.5
4,323,155 + -3.3
4,323,155 + +0.3
4,323,193 + +0.6
4,323,193 + +0.9
4,323,194 - -1.9
4,323,194 - +0.4
4,323,197 + +1.6
4,323,198 - +0.6
4,323,198 - -1.0
4,323,217 - -0.6
4,323,448 + Xcc-8004.4524.1 0.57 -0.2
4,323,448 + Xcc-8004.4524.1 0.57 +0.0
4,323,448 + Xcc-8004.4524.1 0.57 +0.7
4,323,448 + Xcc-8004.4524.1 0.57 +1.2
4,323,448 + Xcc-8004.4524.1 0.57 -0.9
4,323,448 + Xcc-8004.4524.1 0.57 +2.6
4,323,449 - Xcc-8004.4524.1 0.58 -0.8
4,323,449 - Xcc-8004.4524.1 0.58 -2.3
4,323,449 - Xcc-8004.4524.1 0.58 +1.7
4,323,449 - Xcc-8004.4524.1 0.58 -1.4
4,323,449 - Xcc-8004.4524.1 0.58 +1.6
4,323,449 - Xcc-8004.4524.1 0.58 +3.8
4,323,452 + Xcc-8004.4524.1 0.60 +0.7
4,323,452 + Xcc-8004.4524.1 0.60 +0.9
4,323,453 - Xcc-8004.4524.1 0.61 +0.9
4,323,453 - Xcc-8004.4524.1 0.61 -1.7
4,323,453 - Xcc-8004.4524.1 0.61 -2.7
4,323,453 - Xcc-8004.4524.1 0.61 -1.3
4,323,533 + -1.5
4,323,533 + -2.1
4,323,533 + +1.7
4,323,534 - -1.2
4,323,534 - -0.7
4,323,534 - +0.1
4,323,534 - -0.3
4,323,615 + +0.5
4,323,616 - -1.2
4,323,616 - +0.4
4,323,720 + -0.4
4,323,721 - +2.4
4,323,721 - -0.8
4,323,810 + Xcc-8004.4525.1 0.13 +1.9
4,323,811 - Xcc-8004.4525.1 0.14 +0.7
4,323,846 + Xcc-8004.4525.1 0.19 -1.2
4,323,846 + Xcc-8004.4525.1 0.19 -0.1
4,323,847 - Xcc-8004.4525.1 0.19 +0.4
4,323,847 - Xcc-8004.4525.1 0.19 +0.4
4,323,847 - Xcc-8004.4525.1 0.19 +1.8
4,324,164 + Xcc-8004.4525.1 0.66 +1.5
4,324,165 - Xcc-8004.4525.1 0.66 -0.6
4,324,165 - Xcc-8004.4525.1 0.66 +1.9
4,324,165 - Xcc-8004.4525.1 0.66 -1.1
4,324,248 + Xcc-8004.4525.1 0.78 +0.0
4,324,248 + Xcc-8004.4525.1 0.78 +2.2
4,324,249 - Xcc-8004.4525.1 0.79 -1.2
4,324,305 + Xcc-8004.4525.1 0.87 +1.3
4,324,306 - Xcc-8004.4525.1 0.87 +1.1
4,324,338 - +0.4
4,324,345 - +2.1
4,324,366 - +1.0
4,324,521 + -0.4
4,324,521 + +2.2
4,324,521 + +1.1
4,324,521 + +0.6
4,324,521 + +2.3
4,324,522 - +0.7
4,324,522 - +1.6
4,324,522 - -1.7
4,324,522 - +0.3
4,324,522 - -0.2
4,324,522 - -1.8
4,324,522 - -1.0
4,324,940 + Xcc-8004.4526.1 0.51 -0.2
4,324,940 + Xcc-8004.4526.1 0.51 +1.8
4,324,940 + Xcc-8004.4526.1 0.51 +0.7
4,324,940 + Xcc-8004.4526.1 0.51 +0.9
4,324,940 + Xcc-8004.4526.1 0.51 +0.3
4,324,941 - Xcc-8004.4526.1 0.51 +0.6
4,324,941 - Xcc-8004.4526.1 0.51 +1.3
4,325,062 + Xcc-8004.4526.1 0.63 -0.6
4,325,062 + Xcc-8004.4526.1 0.63 -0.7
4,325,062 + Xcc-8004.4526.1 0.63 +1.4
4,325,062 + Xcc-8004.4526.1 0.63 +2.2
4,325,063 - Xcc-8004.4526.1 0.63 -0.3
4,325,063 - Xcc-8004.4526.1 0.63 +2.6
4,325,063 - Xcc-8004.4526.1 0.63 +0.8
4,325,086 + Xcc-8004.4526.1 0.66 +2.2
4,325,086 + Xcc-8004.4526.1 0.66 +1.2
4,325,086 + Xcc-8004.4526.1 0.66 +0.8
4,325,086 + Xcc-8004.4526.1 0.66 +2.4
4,325,086 + Xcc-8004.4526.1 0.66 +1.6
4,325,086 + Xcc-8004.4526.1 0.66 +0.3
4,325,086 + Xcc-8004.4526.1 0.66 -0.2
4,325,086 + Xcc-8004.4526.1 0.66 +0.7
4,325,087 - Xcc-8004.4526.1 0.66 -2.6
4,325,087 - Xcc-8004.4526.1 0.66 -0.8
4,325,087 - Xcc-8004.4526.1 0.66 +2.6
4,325,087 - Xcc-8004.4526.1 0.66 +1.0
4,325,087 - Xcc-8004.4526.1 0.66 +2.2
4,325,087 - Xcc-8004.4526.1 0.66 -0.6
4,325,087 - Xcc-8004.4526.1 0.66 -1.5
4,325,087 - Xcc-8004.4526.1 0.66 +3.4
4,325,087 - Xcc-8004.4526.1 0.66 +0.8
4,325,087 - Xcc-8004.4526.1 0.66 +0.6
4,325,087 - Xcc-8004.4526.1 0.66 +1.2
4,325,087 - Xcc-8004.4526.1 0.66 -0.2
4,325,087 - Xcc-8004.4526.1 0.66 +0.8
4,325,087 - Xcc-8004.4526.1 0.66 +2.0
4,325,087 - Xcc-8004.4526.1 0.66 -0.6
4,325,104 + Xcc-8004.4526.1 0.67 -1.5
4,325,104 + Xcc-8004.4526.1 0.67 -0.3
4,325,104 + Xcc-8004.4526.1 0.67 -0.2
4,325,104 + Xcc-8004.4526.1 0.67 +0.0
4,325,104 + Xcc-8004.4526.1 0.67 -1.8
4,325,104 + Xcc-8004.4526.1 0.67 -0.0
4,325,105 - Xcc-8004.4526.1 0.67 -0.0
4,325,105 - Xcc-8004.4526.1 0.67 -1.9
4,325,105 - Xcc-8004.4526.1 0.67 -0.5
4,325,164 + Xcc-8004.4526.1 0.73 -0.7
4,325,165 - Xcc-8004.4526.1 0.74 +0.4
4,325,165 - Xcc-8004.4526.1 0.74 -1.6
4,325,165 - Xcc-8004.4526.1 0.74 -1.1
4,325,189 - Xcc-8004.4526.1 0.76 +0.3

Or see this region's nucleotide sequence