Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4404.1 and Xcc-8004.4405.1 overlap by 8 nucleotides Xcc-8004.4405.1 and Xcc-8004.4406.1 are separated by 142 nucleotides Xcc-8004.4406.1 and Xcc-8004.4407.1 are separated by 364 nucleotides
Xcc-8004.4404.1: Xcc-8004.4404.1 - FIG01212861: hypothetical protein, at 4,212,543 to 4,212,959
Xcc-8004.4404.1
Xcc-8004.4405.1: Xcc-8004.4405.1 - Outer membrane stress sensor protease DegS, at 4,212,952 to 4,214,610
Xcc-8004.4405.1
Xcc-8004.4406.1: Xcc-8004.4406.1 - Cellulose synthase operon protein C, at 4,214,753 to 4,215,184
Xcc-8004.4406.1
Xcc-8004.4407.1: Xcc-8004.4407.1 - Nicotinate phosphoribosyltransferase (EC 2.4.2.11), at 4,215,549 to 4,216,745
Xcc-8004.4407.1
Position (kb) 4212
4213
4214
4215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4212.015 kb on + strand at 4212.015 kb on + strand at 4212.015 kb on + strand at 4212.016 kb on - strand at 4212.043 kb on + strand at 4212.180 kb on - strand at 4212.180 kb on - strand at 4212.244 kb on - strand at 4212.244 kb on - strand at 4212.269 kb on + strand at 4212.269 kb on + strand at 4212.269 kb on + strand at 4212.270 kb on - strand at 4212.288 kb on + strand at 4212.288 kb on + strand at 4212.380 kb on + strand at 4212.380 kb on + strand at 4212.380 kb on + strand at 4212.380 kb on + strand at 4212.380 kb on + strand at 4212.380 kb on + strand at 4212.380 kb on + strand at 4212.380 kb on + strand at 4212.380 kb on + strand at 4212.380 kb on + strand at 4212.381 kb on - strand at 4212.381 kb on - strand at 4212.381 kb on - strand at 4212.381 kb on - strand at 4212.381 kb on - strand at 4212.381 kb on - strand at 4212.381 kb on - strand at 4212.381 kb on - strand at 4212.509 kb on + strand at 4212.509 kb on + strand at 4212.509 kb on + strand at 4212.509 kb on + strand at 4212.509 kb on + strand at 4212.510 kb on - strand at 4212.957 kb on + strand at 4212.957 kb on + strand at 4212.957 kb on + strand at 4212.957 kb on + strand at 4212.957 kb on + strand at 4212.957 kb on + strand at 4212.957 kb on + strand at 4212.957 kb on + strand at 4212.957 kb on + strand at 4212.957 kb on + strand at 4212.958 kb on - strand at 4212.958 kb on - strand at 4212.958 kb on - strand at 4212.958 kb on - strand at 4212.958 kb on - strand at 4212.958 kb on - strand at 4212.958 kb on - strand at 4212.958 kb on - strand at 4212.958 kb on - strand at 4212.958 kb on - strand at 4212.958 kb on - strand at 4212.958 kb on - strand at 4213.142 kb on - strand, within Xcc-8004.4405.1 at 4213.147 kb on + strand, within Xcc-8004.4405.1 at 4213.147 kb on + strand, within Xcc-8004.4405.1 at 4213.147 kb on + strand, within Xcc-8004.4405.1 at 4213.147 kb on + strand, within Xcc-8004.4405.1 at 4213.148 kb on - strand, within Xcc-8004.4405.1 at 4213.148 kb on - strand, within Xcc-8004.4405.1 at 4213.148 kb on - strand, within Xcc-8004.4405.1 at 4213.148 kb on - strand, within Xcc-8004.4405.1 at 4213.148 kb on - strand, within Xcc-8004.4405.1 at 4213.201 kb on + strand, within Xcc-8004.4405.1 at 4213.202 kb on - strand, within Xcc-8004.4405.1 at 4213.202 kb on - strand, within Xcc-8004.4405.1 at 4213.202 kb on - strand, within Xcc-8004.4405.1 at 4213.202 kb on - strand, within Xcc-8004.4405.1 at 4213.202 kb on - strand, within Xcc-8004.4405.1 at 4213.202 kb on - strand, within Xcc-8004.4405.1 at 4213.302 kb on + strand, within Xcc-8004.4405.1 at 4213.302 kb on + strand, within Xcc-8004.4405.1 at 4213.302 kb on + strand, within Xcc-8004.4405.1 at 4213.302 kb on + strand, within Xcc-8004.4405.1 at 4213.302 kb on + strand, within Xcc-8004.4405.1 at 4213.302 kb on + strand, within Xcc-8004.4405.1 at 4213.302 kb on + strand, within Xcc-8004.4405.1 at 4213.302 kb on + strand, within Xcc-8004.4405.1 at 4213.303 kb on - strand, within Xcc-8004.4405.1 at 4213.303 kb on - strand, within Xcc-8004.4405.1 at 4213.303 kb on - strand, within Xcc-8004.4405.1 at 4213.303 kb on - strand, within Xcc-8004.4405.1 at 4213.309 kb on + strand, within Xcc-8004.4405.1 at 4213.309 kb on + strand, within Xcc-8004.4405.1 at 4213.310 kb on - strand, within Xcc-8004.4405.1 at 4213.310 kb on - strand, within Xcc-8004.4405.1 at 4213.310 kb on - strand, within Xcc-8004.4405.1 at 4213.310 kb on - strand, within Xcc-8004.4405.1 at 4213.353 kb on - strand, within Xcc-8004.4405.1 at 4213.438 kb on + strand, within Xcc-8004.4405.1 at 4213.439 kb on - strand, within Xcc-8004.4405.1 at 4213.439 kb on - strand, within Xcc-8004.4405.1 at 4213.439 kb on - strand, within Xcc-8004.4405.1 at 4213.585 kb on + strand, within Xcc-8004.4405.1 at 4213.585 kb on + strand, within Xcc-8004.4405.1 at 4213.585 kb on + strand, within Xcc-8004.4405.1 at 4213.586 kb on - strand, within Xcc-8004.4405.1 at 4213.586 kb on - strand, within Xcc-8004.4405.1 at 4213.586 kb on - strand, within Xcc-8004.4405.1 at 4214.155 kb on + strand, within Xcc-8004.4405.1 at 4214.155 kb on + strand, within Xcc-8004.4405.1 at 4214.156 kb on - strand, within Xcc-8004.4405.1 at 4214.156 kb on - strand, within Xcc-8004.4405.1 at 4214.209 kb on + strand, within Xcc-8004.4405.1 at 4214.210 kb on - strand, within Xcc-8004.4405.1 at 4214.210 kb on - strand, within Xcc-8004.4405.1 at 4214.210 kb on - strand, within Xcc-8004.4405.1 at 4214.503 kb on + strand at 4214.504 kb on - strand at 4214.504 kb on - strand at 4214.783 kb on + strand at 4214.783 kb on + strand at 4214.784 kb on - strand at 4214.784 kb on - strand at 4214.838 kb on + strand, within Xcc-8004.4406.1 at 4214.839 kb on - strand, within Xcc-8004.4406.1 at 4214.839 kb on - strand, within Xcc-8004.4406.1 at 4214.862 kb on + strand, within Xcc-8004.4406.1 at 4214.863 kb on - strand, within Xcc-8004.4406.1 at 4214.863 kb on - strand, within Xcc-8004.4406.1 at 4214.863 kb on - strand, within Xcc-8004.4406.1 at 4214.863 kb on - strand, within Xcc-8004.4406.1 at 4214.946 kb on + strand, within Xcc-8004.4406.1 at 4214.946 kb on + strand, within Xcc-8004.4406.1 at 4214.946 kb on + strand, within Xcc-8004.4406.1 at 4214.947 kb on - strand, within Xcc-8004.4406.1 at 4214.947 kb on - strand, within Xcc-8004.4406.1 at 4214.947 kb on - strand, within Xcc-8004.4406.1 at 4214.947 kb on - strand, within Xcc-8004.4406.1 at 4214.976 kb on + strand, within Xcc-8004.4406.1 at 4214.977 kb on - strand, within Xcc-8004.4406.1 at 4214.989 kb on + strand, within Xcc-8004.4406.1 at 4214.991 kb on + strand, within Xcc-8004.4406.1 at 4214.992 kb on - strand, within Xcc-8004.4406.1 at 4215.036 kb on + strand, within Xcc-8004.4406.1 at 4215.037 kb on - strand, within Xcc-8004.4406.1 at 4215.073 kb on - strand, within Xcc-8004.4406.1 at 4215.186 kb on + strand at 4215.186 kb on + strand at 4215.186 kb on + strand at 4215.186 kb on + strand at 4215.186 kb on + strand at 4215.187 kb on - strand at 4215.187 kb on - strand at 4215.187 kb on - strand at 4215.187 kb on - strand at 4215.187 kb on - strand at 4215.187 kb on - strand at 4215.187 kb on - strand at 4215.187 kb on - strand at 4215.204 kb on + strand at 4215.205 kb on - strand at 4215.205 kb on - strand at 4215.205 kb on - strand at 4215.205 kb on - strand at 4215.205 kb on - strand at 4215.219 kb on + strand at 4215.220 kb on - strand at 4215.220 kb on - strand at 4215.220 kb on - strand at 4215.239 kb on - strand at 4215.539 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 4,212,015 + -0.7 4,212,015 + +1.0 4,212,015 + -0.2 4,212,016 - -2.0 4,212,043 + +0.3 4,212,180 - +1.2 4,212,180 - -1.4 4,212,244 - +0.1 4,212,244 - -0.2 4,212,269 + +1.2 4,212,269 + -1.1 4,212,269 + +0.6 4,212,270 - +0.5 4,212,288 + +0.3 4,212,288 + -0.8 4,212,380 + +1.0 4,212,380 + +0.2 4,212,380 + -0.9 4,212,380 + +1.4 4,212,380 + -1.9 4,212,380 + -1.5 4,212,380 + +0.8 4,212,380 + +0.4 4,212,380 + +1.3 4,212,380 + +0.1 4,212,381 - +1.0 4,212,381 - -0.6 4,212,381 - -0.7 4,212,381 - -1.2 4,212,381 - +0.0 4,212,381 - +0.4 4,212,381 - +2.1 4,212,381 - -0.1 4,212,509 + -1.3 4,212,509 + +0.5 4,212,509 + +0.5 4,212,509 + -0.0 4,212,509 + -1.2 4,212,510 - +0.2 4,212,957 + +1.1 4,212,957 + +2.6 4,212,957 + +0.8 4,212,957 + -2.5 4,212,957 + -0.5 4,212,957 + +0.2 4,212,957 + -1.4 4,212,957 + -1.6 4,212,957 + +1.0 4,212,957 + +1.6 4,212,958 - -0.3 4,212,958 - +0.0 4,212,958 - +1.2 4,212,958 - +0.0 4,212,958 - +0.1 4,212,958 - +2.6 4,212,958 - +0.8 4,212,958 - -1.6 4,212,958 - -1.5 4,212,958 - -0.4 4,212,958 - +1.0 4,212,958 - +0.6 4,213,142 - Xcc-8004.4405.1 0.11 +1.1 4,213,147 + Xcc-8004.4405.1 0.12 -1.3 4,213,147 + Xcc-8004.4405.1 0.12 -0.2 4,213,147 + Xcc-8004.4405.1 0.12 -0.4 4,213,147 + Xcc-8004.4405.1 0.12 -2.5 4,213,148 - Xcc-8004.4405.1 0.12 +1.1 4,213,148 - Xcc-8004.4405.1 0.12 -0.0 4,213,148 - Xcc-8004.4405.1 0.12 +3.3 4,213,148 - Xcc-8004.4405.1 0.12 -1.0 4,213,148 - Xcc-8004.4405.1 0.12 +0.9 4,213,201 + Xcc-8004.4405.1 0.15 -0.5 4,213,202 - Xcc-8004.4405.1 0.15 +0.4 4,213,202 - Xcc-8004.4405.1 0.15 -0.8 4,213,202 - Xcc-8004.4405.1 0.15 -2.8 4,213,202 - Xcc-8004.4405.1 0.15 +0.6 4,213,202 - Xcc-8004.4405.1 0.15 -0.6 4,213,202 - Xcc-8004.4405.1 0.15 +1.4 4,213,302 + Xcc-8004.4405.1 0.21 -0.4 4,213,302 + Xcc-8004.4405.1 0.21 +0.1 4,213,302 + Xcc-8004.4405.1 0.21 -0.2 4,213,302 + Xcc-8004.4405.1 0.21 +1.7 4,213,302 + Xcc-8004.4405.1 0.21 -0.7 4,213,302 + Xcc-8004.4405.1 0.21 -0.2 4,213,302 + Xcc-8004.4405.1 0.21 -0.6 4,213,302 + Xcc-8004.4405.1 0.21 -0.8 4,213,303 - Xcc-8004.4405.1 0.21 -0.6 4,213,303 - Xcc-8004.4405.1 0.21 +0.2 4,213,303 - Xcc-8004.4405.1 0.21 +0.6 4,213,303 - Xcc-8004.4405.1 0.21 -1.0 4,213,309 + Xcc-8004.4405.1 0.22 -2.0 4,213,309 + Xcc-8004.4405.1 0.22 -0.0 4,213,310 - Xcc-8004.4405.1 0.22 +0.4 4,213,310 - Xcc-8004.4405.1 0.22 -0.3 4,213,310 - Xcc-8004.4405.1 0.22 -0.2 4,213,310 - Xcc-8004.4405.1 0.22 +1.4 4,213,353 - Xcc-8004.4405.1 0.24 -1.5 4,213,438 + Xcc-8004.4405.1 0.29 -0.9 4,213,439 - Xcc-8004.4405.1 0.29 +0.1 4,213,439 - Xcc-8004.4405.1 0.29 +1.6 4,213,439 - Xcc-8004.4405.1 0.29 -0.2 4,213,585 + Xcc-8004.4405.1 0.38 +1.7 4,213,585 + Xcc-8004.4405.1 0.38 -1.2 4,213,585 + Xcc-8004.4405.1 0.38 -0.8 4,213,586 - Xcc-8004.4405.1 0.38 -1.2 4,213,586 - Xcc-8004.4405.1 0.38 +1.7 4,213,586 - Xcc-8004.4405.1 0.38 +0.7 4,214,155 + Xcc-8004.4405.1 0.73 -1.4 4,214,155 + Xcc-8004.4405.1 0.73 -1.3 4,214,156 - Xcc-8004.4405.1 0.73 +0.1 4,214,156 - Xcc-8004.4405.1 0.73 +0.8 4,214,209 + Xcc-8004.4405.1 0.76 +0.2 4,214,210 - Xcc-8004.4405.1 0.76 +1.6 4,214,210 - Xcc-8004.4405.1 0.76 +2.0 4,214,210 - Xcc-8004.4405.1 0.76 +2.2 4,214,503 + -0.1 4,214,504 - -1.7 4,214,504 - -1.2 4,214,783 + -0.9 4,214,783 + +0.7 4,214,784 - -1.4 4,214,784 - +4.2 4,214,838 + Xcc-8004.4406.1 0.20 -0.7 4,214,839 - Xcc-8004.4406.1 0.20 -1.6 4,214,839 - Xcc-8004.4406.1 0.20 +0.5 4,214,862 + Xcc-8004.4406.1 0.25 +0.2 4,214,863 - Xcc-8004.4406.1 0.25 -1.9 4,214,863 - Xcc-8004.4406.1 0.25 +1.6 4,214,863 - Xcc-8004.4406.1 0.25 -0.9 4,214,863 - Xcc-8004.4406.1 0.25 -1.7 4,214,946 + Xcc-8004.4406.1 0.45 +1.6 4,214,946 + Xcc-8004.4406.1 0.45 +0.2 4,214,946 + Xcc-8004.4406.1 0.45 -0.5 4,214,947 - Xcc-8004.4406.1 0.45 -0.2 4,214,947 - Xcc-8004.4406.1 0.45 +0.7 4,214,947 - Xcc-8004.4406.1 0.45 -2.1 4,214,947 - Xcc-8004.4406.1 0.45 -0.9 4,214,976 + Xcc-8004.4406.1 0.52 -0.1 4,214,977 - Xcc-8004.4406.1 0.52 +0.5 4,214,989 + Xcc-8004.4406.1 0.55 +2.6 4,214,991 + Xcc-8004.4406.1 0.55 -1.0 4,214,992 - Xcc-8004.4406.1 0.55 +1.4 4,215,036 + Xcc-8004.4406.1 0.66 -0.3 4,215,037 - Xcc-8004.4406.1 0.66 +1.6 4,215,073 - Xcc-8004.4406.1 0.74 +0.8 4,215,186 + -1.3 4,215,186 + +0.3 4,215,186 + +0.9 4,215,186 + -1.6 4,215,186 + -0.9 4,215,187 - -0.3 4,215,187 - -0.2 4,215,187 - +0.3 4,215,187 - -0.4 4,215,187 - -2.4 4,215,187 - -1.0 4,215,187 - -0.2 4,215,187 - -0.0 4,215,204 + +6.2 4,215,205 - +1.0 4,215,205 - +1.2 4,215,205 - +1.2 4,215,205 - -3.2 4,215,205 - +1.0 4,215,219 + +0.9 4,215,220 - +1.2 4,215,220 - -1.9 4,215,220 - +0.6 4,215,239 - -1.0 4,215,539 + -0.7
Or see this region's nucleotide sequence