Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4073.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4072.1 and Xcc-8004.4073.1 are separated by 31 nucleotidesXcc-8004.4073.1 and Xcc-8004.4074.1 are separated by 30 nucleotidesXcc-8004.4074.1 and Xcc-8004.4075.1 are separated by 91 nucleotides Xcc-8004.4072.1: Xcc-8004.4072.1 - COG2833: uncharacterized protein, at 3,928,716 to 3,929,564 Xcc-8004.4072.1 Xcc-8004.4073.1: Xcc-8004.4073.1 - Amidophosphoribosyltransferase (EC 2.4.2.14), at 3,929,596 to 3,931,062 Xcc-8004.4073.1 Xcc-8004.4074.1: Xcc-8004.4074.1 - Colicin V production protein, at 3,931,093 to 3,931,839 Xcc-8004.4074.1 Xcc-8004.4075.1: Xcc-8004.4075.1 - DedD protein, at 3,931,931 to 3,932,998 Xcc-8004.4075.1 Position (kb) 3929 3930 3931 3932Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3928.615 kb on + strandat 3928.616 kb on - strandat 3928.686 kb on + strandat 3928.687 kb on - strandat 3928.816 kb on + strand, within Xcc-8004.4072.1at 3929.110 kb on + strand, within Xcc-8004.4072.1at 3929.111 kb on - strand, within Xcc-8004.4072.1at 3929.194 kb on + strand, within Xcc-8004.4072.1at 3929.194 kb on + strand, within Xcc-8004.4072.1at 3929.194 kb on + strand, within Xcc-8004.4072.1at 3929.194 kb on + strand, within Xcc-8004.4072.1at 3929.195 kb on - strand, within Xcc-8004.4072.1at 3929.225 kb on - strand, within Xcc-8004.4072.1at 3929.307 kb on - strand, within Xcc-8004.4072.1at 3929.372 kb on + strand, within Xcc-8004.4072.1at 3929.372 kb on + strand, within Xcc-8004.4072.1at 3929.373 kb on - strand, within Xcc-8004.4072.1at 3929.654 kb on + strandat 3929.654 kb on + strandat 3929.655 kb on - strandat 3929.678 kb on + strandat 3929.678 kb on + strandat 3929.678 kb on + strandat 3929.679 kb on - strandat 3929.679 kb on - strandat 3929.765 kb on + strand, within Xcc-8004.4073.1at 3929.858 kb on + strand, within Xcc-8004.4073.1at 3929.858 kb on + strand, within Xcc-8004.4073.1at 3929.858 kb on + strand, within Xcc-8004.4073.1at 3929.859 kb on - strand, within Xcc-8004.4073.1at 3929.859 kb on - strand, within Xcc-8004.4073.1at 3929.859 kb on - strand, within Xcc-8004.4073.1at 3929.859 kb on - strand, within Xcc-8004.4073.1at 3929.859 kb on - strand, within Xcc-8004.4073.1at 3929.863 kb on - strand, within Xcc-8004.4073.1at 3929.900 kb on + strand, within Xcc-8004.4073.1at 3929.900 kb on + strand, within Xcc-8004.4073.1at 3929.900 kb on + strand, within Xcc-8004.4073.1at 3929.900 kb on + strand, within Xcc-8004.4073.1at 3929.900 kb on + strand, within Xcc-8004.4073.1at 3929.901 kb on - strand, within Xcc-8004.4073.1at 3929.901 kb on - strand, within Xcc-8004.4073.1at 3929.901 kb on - strand, within Xcc-8004.4073.1at 3929.901 kb on - strand, within Xcc-8004.4073.1at 3929.901 kb on - strand, within Xcc-8004.4073.1at 3929.901 kb on - strand, within Xcc-8004.4073.1at 3930.113 kb on + strand, within Xcc-8004.4073.1at 3930.113 kb on + strand, within Xcc-8004.4073.1at 3930.113 kb on + strand, within Xcc-8004.4073.1at 3930.114 kb on - strand, within Xcc-8004.4073.1at 3930.163 kb on - strand, within Xcc-8004.4073.1at 3930.163 kb on - strand, within Xcc-8004.4073.1at 3930.299 kb on + strand, within Xcc-8004.4073.1at 3930.299 kb on + strand, within Xcc-8004.4073.1at 3930.300 kb on - strand, within Xcc-8004.4073.1at 3930.305 kb on + strand, within Xcc-8004.4073.1at 3930.305 kb on + strand, within Xcc-8004.4073.1at 3930.305 kb on + strand, within Xcc-8004.4073.1at 3930.305 kb on + strand, within Xcc-8004.4073.1at 3930.306 kb on - strand, within Xcc-8004.4073.1at 3930.306 kb on - strand, within Xcc-8004.4073.1at 3930.306 kb on - strand, within Xcc-8004.4073.1at 3930.461 kb on + strand, within Xcc-8004.4073.1at 3930.461 kb on + strand, within Xcc-8004.4073.1at 3930.461 kb on + strand, within Xcc-8004.4073.1at 3930.461 kb on + strand, within Xcc-8004.4073.1at 3930.462 kb on - strand, within Xcc-8004.4073.1at 3930.462 kb on - strand, within Xcc-8004.4073.1at 3930.570 kb on - strand, within Xcc-8004.4073.1at 3930.601 kb on + strand, within Xcc-8004.4073.1at 3930.601 kb on + strand, within Xcc-8004.4073.1at 3930.699 kb on + strand, within Xcc-8004.4073.1at 3930.700 kb on - strand, within Xcc-8004.4073.1at 3930.797 kb on + strand, within Xcc-8004.4073.1at 3930.797 kb on + strand, within Xcc-8004.4073.1at 3930.797 kb on + strand, within Xcc-8004.4073.1at 3930.797 kb on + strand, within Xcc-8004.4073.1at 3930.798 kb on - strand, within Xcc-8004.4073.1at 3930.798 kb on - strand, within Xcc-8004.4073.1at 3930.798 kb on - strand, within Xcc-8004.4073.1at 3930.798 kb on - strand, within Xcc-8004.4073.1at 3930.798 kb on - strand, within Xcc-8004.4073.1at 3930.798 kb on - strand, within Xcc-8004.4073.1at 3930.798 kb on - strand, within Xcc-8004.4073.1at 3931.010 kb on + strandat 3931.010 kb on + strandat 3931.010 kb on + strandat 3931.010 kb on + strandat 3931.011 kb on - strandat 3931.011 kb on - strandat 3931.011 kb on - strandat 3931.011 kb on - strandat 3931.045 kb on - strandat 3931.176 kb on + strand, within Xcc-8004.4074.1at 3931.296 kb on + strand, within Xcc-8004.4074.1at 3931.297 kb on - strand, within Xcc-8004.4074.1at 3931.297 kb on - strand, within Xcc-8004.4074.1at 3931.297 kb on - strand, within Xcc-8004.4074.1at 3931.297 kb on - strand, within Xcc-8004.4074.1at 3931.300 kb on - strand, within Xcc-8004.4074.1at 3931.300 kb on - strand, within Xcc-8004.4074.1at 3931.300 kb on - strand, within Xcc-8004.4074.1at 3931.336 kb on + strand, within Xcc-8004.4074.1at 3931.336 kb on + strand, within Xcc-8004.4074.1at 3931.336 kb on + strand, within Xcc-8004.4074.1at 3931.337 kb on - strand, within Xcc-8004.4074.1at 3931.337 kb on - strand, within Xcc-8004.4074.1at 3931.337 kb on - strand, within Xcc-8004.4074.1at 3931.337 kb on - strand, within Xcc-8004.4074.1at 3931.337 kb on - strand, within Xcc-8004.4074.1at 3931.337 kb on - strand, within Xcc-8004.4074.1at 3931.624 kb on + strand, within Xcc-8004.4074.1at 3931.624 kb on + strand, within Xcc-8004.4074.1at 3931.625 kb on - strand, within Xcc-8004.4074.1at 3931.646 kb on + strand, within Xcc-8004.4074.1at 3931.647 kb on - strand, within Xcc-8004.4074.1at 3931.922 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,928,615 + -1.0
3,928,616 - -0.6
3,928,686 + -0.2
3,928,687 - +1.9
3,928,816 + Xcc-8004.4072.1 0.12 -0.8
3,929,110 + Xcc-8004.4072.1 0.46 +1.1
3,929,111 - Xcc-8004.4072.1 0.47 +0.7
3,929,194 + Xcc-8004.4072.1 0.56 +0.7
3,929,194 + Xcc-8004.4072.1 0.56 -1.7
3,929,194 + Xcc-8004.4072.1 0.56 -0.9
3,929,194 + Xcc-8004.4072.1 0.56 -2.0
3,929,195 - Xcc-8004.4072.1 0.56 +0.5
3,929,225 - Xcc-8004.4072.1 0.60 -1.5
3,929,307 - Xcc-8004.4072.1 0.70 +1.3
3,929,372 + Xcc-8004.4072.1 0.77 -0.8
3,929,372 + Xcc-8004.4072.1 0.77 -1.7
3,929,373 - Xcc-8004.4072.1 0.77 +0.6
3,929,654 + -2.1
3,929,654 + -3.0
3,929,655 - -1.9
3,929,678 + -3.7
3,929,678 + -1.9
3,929,678 + -0.4
3,929,679 - -1.0
3,929,679 - -2.4
3,929,765 + Xcc-8004.4073.1 0.12 -3.5
3,929,858 + Xcc-8004.4073.1 0.18 -2.6
3,929,858 + Xcc-8004.4073.1 0.18 -0.4
3,929,858 + Xcc-8004.4073.1 0.18 -1.6
3,929,859 - Xcc-8004.4073.1 0.18 -2.6
3,929,859 - Xcc-8004.4073.1 0.18 -2.0
3,929,859 - Xcc-8004.4073.1 0.18 -1.2
3,929,859 - Xcc-8004.4073.1 0.18 -1.0
3,929,859 - Xcc-8004.4073.1 0.18 +0.3
3,929,863 - Xcc-8004.4073.1 0.18 -2.9
3,929,900 + Xcc-8004.4073.1 0.21 -0.9
3,929,900 + Xcc-8004.4073.1 0.21 -2.7
3,929,900 + Xcc-8004.4073.1 0.21 -2.5
3,929,900 + Xcc-8004.4073.1 0.21 +0.0
3,929,900 + Xcc-8004.4073.1 0.21 -1.0
3,929,901 - Xcc-8004.4073.1 0.21 -2.1
3,929,901 - Xcc-8004.4073.1 0.21 +0.2
3,929,901 - Xcc-8004.4073.1 0.21 -1.9
3,929,901 - Xcc-8004.4073.1 0.21 -3.1
3,929,901 - Xcc-8004.4073.1 0.21 -1.6
3,929,901 - Xcc-8004.4073.1 0.21 -1.3
3,930,113 + Xcc-8004.4073.1 0.35 -4.6
3,930,113 + Xcc-8004.4073.1 0.35 +1.0
3,930,113 + Xcc-8004.4073.1 0.35 -3.0
3,930,114 - Xcc-8004.4073.1 0.35 -3.7
3,930,163 - Xcc-8004.4073.1 0.39 -1.9
3,930,163 - Xcc-8004.4073.1 0.39 +0.9
3,930,299 + Xcc-8004.4073.1 0.48 -1.7
3,930,299 + Xcc-8004.4073.1 0.48 -1.9
3,930,300 - Xcc-8004.4073.1 0.48 +0.1
3,930,305 + Xcc-8004.4073.1 0.48 -2.1
3,930,305 + Xcc-8004.4073.1 0.48 -3.2
3,930,305 + Xcc-8004.4073.1 0.48 +1.0
3,930,305 + Xcc-8004.4073.1 0.48 -1.9
3,930,306 - Xcc-8004.4073.1 0.48 -1.2
3,930,306 - Xcc-8004.4073.1 0.48 -0.4
3,930,306 - Xcc-8004.4073.1 0.48 -3.0
3,930,461 + Xcc-8004.4073.1 0.59 -2.7
3,930,461 + Xcc-8004.4073.1 0.59 -2.3
3,930,461 + Xcc-8004.4073.1 0.59 -4.0
3,930,461 + Xcc-8004.4073.1 0.59 -2.1
3,930,462 - Xcc-8004.4073.1 0.59 -3.9
3,930,462 - Xcc-8004.4073.1 0.59 -3.3
3,930,570 - Xcc-8004.4073.1 0.66 -1.4
3,930,601 + Xcc-8004.4073.1 0.69 -2.5
3,930,601 + Xcc-8004.4073.1 0.69 +2.6
3,930,699 + Xcc-8004.4073.1 0.75 +0.6
3,930,700 - Xcc-8004.4073.1 0.75 -3.0
3,930,797 + Xcc-8004.4073.1 0.82 -1.7
3,930,797 + Xcc-8004.4073.1 0.82 -2.2
3,930,797 + Xcc-8004.4073.1 0.82 -1.1
3,930,797 + Xcc-8004.4073.1 0.82 -0.9
3,930,798 - Xcc-8004.4073.1 0.82 -3.8
3,930,798 - Xcc-8004.4073.1 0.82 -1.5
3,930,798 - Xcc-8004.4073.1 0.82 -2.4
3,930,798 - Xcc-8004.4073.1 0.82 -2.5
3,930,798 - Xcc-8004.4073.1 0.82 -3.3
3,930,798 - Xcc-8004.4073.1 0.82 -0.3
3,930,798 - Xcc-8004.4073.1 0.82 -2.1
3,931,010 + -1.2
3,931,010 + -1.1
3,931,010 + -0.2
3,931,010 + -2.6
3,931,011 - -2.5
3,931,011 - -0.4
3,931,011 - -1.7
3,931,011 - -3.0
3,931,045 - +0.7
3,931,176 + Xcc-8004.4074.1 0.11 -0.7
3,931,296 + Xcc-8004.4074.1 0.27 -2.3
3,931,297 - Xcc-8004.4074.1 0.27 +0.5
3,931,297 - Xcc-8004.4074.1 0.27 +0.9
3,931,297 - Xcc-8004.4074.1 0.27 +0.8
3,931,297 - Xcc-8004.4074.1 0.27 +0.4
3,931,300 - Xcc-8004.4074.1 0.28 +1.4
3,931,300 - Xcc-8004.4074.1 0.28 +1.5
3,931,300 - Xcc-8004.4074.1 0.28 +0.1
3,931,336 + Xcc-8004.4074.1 0.33 +2.2
3,931,336 + Xcc-8004.4074.1 0.33 -2.7
3,931,336 + Xcc-8004.4074.1 0.33 +0.6
3,931,337 - Xcc-8004.4074.1 0.33 +0.2
3,931,337 - Xcc-8004.4074.1 0.33 -1.6
3,931,337 - Xcc-8004.4074.1 0.33 -1.1
3,931,337 - Xcc-8004.4074.1 0.33 -0.2
3,931,337 - Xcc-8004.4074.1 0.33 +1.2
3,931,337 - Xcc-8004.4074.1 0.33 +1.5
3,931,624 + Xcc-8004.4074.1 0.71 +1.6
3,931,624 + Xcc-8004.4074.1 0.71 -0.4
3,931,625 - Xcc-8004.4074.1 0.71 -0.6
3,931,646 + Xcc-8004.4074.1 0.74 +1.0
3,931,647 - Xcc-8004.4074.1 0.74 -1.0
3,931,922 + -1.3

Or see this region's nucleotide sequence