Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4004.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4002.1 and Xcc-8004.4003.1 are separated by 0 nucleotidesXcc-8004.4003.1 and Xcc-8004.4004.1 overlap by 1 nucleotidesXcc-8004.4004.1 and Xcc-8004.4005.1 are separated by 63 nucleotidesXcc-8004.4005.1 and Xcc-8004.4006.1 are separated by 16 nucleotides Xcc-8004.4002.1: Xcc-8004.4002.1 - FIG01211730: hypothetical protein, at 3,877,223 to 3,878,842 Xcc-8004.4002.1 Xcc-8004.4003.1: Xcc-8004.4003.1 - FIG01211730: hypothetical protein, at 3,878,843 to 3,879,049 Xcc-8004.4003.1 Xcc-8004.4004.1: Xcc-8004.4004.1 - FIG01211850: hypothetical protein, at 3,879,049 to 3,879,465 Xcc-8004.4004.1 Xcc-8004.4005.1: Xcc-8004.4005.1 - Glycosyltransferase, at 3,879,529 to 3,880,032 Xcc-8004.4005.1 Xcc-8004.4006.1: Xcc-8004.4006.1 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 3,880,049 to 3,881,905 Xcc-8004.4006.1 Position (kb) 3879 3880Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3878.082 kb on + strand, within Xcc-8004.4002.1at 3878.082 kb on + strand, within Xcc-8004.4002.1at 3878.083 kb on - strand, within Xcc-8004.4002.1at 3878.083 kb on - strand, within Xcc-8004.4002.1at 3878.083 kb on - strand, within Xcc-8004.4002.1at 3878.083 kb on - strand, within Xcc-8004.4002.1at 3878.126 kb on - strand, within Xcc-8004.4002.1at 3878.126 kb on - strand, within Xcc-8004.4002.1at 3878.143 kb on + strand, within Xcc-8004.4002.1at 3878.143 kb on + strand, within Xcc-8004.4002.1at 3878.144 kb on - strand, within Xcc-8004.4002.1at 3878.144 kb on - strand, within Xcc-8004.4002.1at 3878.144 kb on - strand, within Xcc-8004.4002.1at 3878.233 kb on + strand, within Xcc-8004.4002.1at 3878.233 kb on + strand, within Xcc-8004.4002.1at 3878.234 kb on - strand, within Xcc-8004.4002.1at 3878.234 kb on - strand, within Xcc-8004.4002.1at 3878.234 kb on - strand, within Xcc-8004.4002.1at 3878.292 kb on + strand, within Xcc-8004.4002.1at 3878.292 kb on + strand, within Xcc-8004.4002.1at 3878.293 kb on - strand, within Xcc-8004.4002.1at 3878.318 kb on + strand, within Xcc-8004.4002.1at 3878.318 kb on + strand, within Xcc-8004.4002.1at 3878.318 kb on + strand, within Xcc-8004.4002.1at 3878.318 kb on + strand, within Xcc-8004.4002.1at 3878.319 kb on - strand, within Xcc-8004.4002.1at 3878.319 kb on - strand, within Xcc-8004.4002.1at 3878.416 kb on - strand, within Xcc-8004.4002.1at 3878.416 kb on - strand, within Xcc-8004.4002.1at 3878.466 kb on + strand, within Xcc-8004.4002.1at 3878.466 kb on + strand, within Xcc-8004.4002.1at 3878.466 kb on + strand, within Xcc-8004.4002.1at 3878.466 kb on + strand, within Xcc-8004.4002.1at 3878.466 kb on + strand, within Xcc-8004.4002.1at 3878.466 kb on + strand, within Xcc-8004.4002.1at 3878.467 kb on - strand, within Xcc-8004.4002.1at 3878.467 kb on - strand, within Xcc-8004.4002.1at 3878.473 kb on + strand, within Xcc-8004.4002.1at 3878.473 kb on + strand, within Xcc-8004.4002.1at 3878.473 kb on + strand, within Xcc-8004.4002.1at 3878.473 kb on + strand, within Xcc-8004.4002.1at 3878.474 kb on - strand, within Xcc-8004.4002.1at 3878.474 kb on - strand, within Xcc-8004.4002.1at 3878.474 kb on - strand, within Xcc-8004.4002.1at 3878.474 kb on - strand, within Xcc-8004.4002.1at 3878.793 kb on + strandat 3878.794 kb on - strandat 3878.794 kb on - strandat 3878.859 kb on + strandat 3878.859 kb on + strandat 3878.859 kb on + strandat 3878.859 kb on + strandat 3878.860 kb on - strandat 3878.860 kb on - strandat 3878.860 kb on - strandat 3878.860 kb on - strandat 3878.860 kb on - strandat 3878.860 kb on - strandat 3878.868 kb on + strand, within Xcc-8004.4003.1at 3878.868 kb on + strand, within Xcc-8004.4003.1at 3878.868 kb on + strand, within Xcc-8004.4003.1at 3878.868 kb on + strand, within Xcc-8004.4003.1at 3878.868 kb on + strand, within Xcc-8004.4003.1at 3878.869 kb on - strand, within Xcc-8004.4003.1at 3878.869 kb on - strand, within Xcc-8004.4003.1at 3878.869 kb on - strand, within Xcc-8004.4003.1at 3878.869 kb on - strand, within Xcc-8004.4003.1at 3878.869 kb on - strand, within Xcc-8004.4003.1at 3878.869 kb on - strand, within Xcc-8004.4003.1at 3878.869 kb on - strand, within Xcc-8004.4003.1at 3878.869 kb on - strand, within Xcc-8004.4003.1at 3878.942 kb on + strand, within Xcc-8004.4003.1at 3878.942 kb on + strand, within Xcc-8004.4003.1at 3878.943 kb on - strand, within Xcc-8004.4003.1at 3878.943 kb on - strand, within Xcc-8004.4003.1at 3878.956 kb on + strand, within Xcc-8004.4003.1at 3878.956 kb on + strand, within Xcc-8004.4003.1at 3878.957 kb on - strand, within Xcc-8004.4003.1at 3879.107 kb on + strand, within Xcc-8004.4004.1at 3879.248 kb on + strand, within Xcc-8004.4004.1at 3879.248 kb on + strand, within Xcc-8004.4004.1at 3879.248 kb on + strand, within Xcc-8004.4004.1at 3879.249 kb on - strand, within Xcc-8004.4004.1at 3879.249 kb on - strand, within Xcc-8004.4004.1at 3879.249 kb on - strand, within Xcc-8004.4004.1at 3879.249 kb on - strand, within Xcc-8004.4004.1at 3879.249 kb on - strand, within Xcc-8004.4004.1at 3879.360 kb on + strand, within Xcc-8004.4004.1at 3879.388 kb on - strand, within Xcc-8004.4004.1at 3879.388 kb on - strand, within Xcc-8004.4004.1at 3879.425 kb on + strandat 3879.426 kb on - strandat 3879.426 kb on - strandat 3879.426 kb on - strandat 3879.530 kb on + strandat 3879.530 kb on + strandat 3879.531 kb on - strandat 3879.738 kb on - strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.764 kb on + strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3879.765 kb on - strand, within Xcc-8004.4005.1at 3880.023 kb on + strandat 3880.024 kb on - strandat 3880.024 kb on - strandat 3880.034 kb on + strandat 3880.034 kb on + strandat 3880.034 kb on + strandat 3880.035 kb on - strandat 3880.171 kb on + strandat 3880.243 kb on - strand, within Xcc-8004.4006.1at 3880.243 kb on - strand, within Xcc-8004.4006.1at 3880.367 kb on - strand, within Xcc-8004.4006.1at 3880.367 kb on - strand, within Xcc-8004.4006.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,878,082 + Xcc-8004.4002.1 0.53 -0.2
3,878,082 + Xcc-8004.4002.1 0.53 +0.7
3,878,083 - Xcc-8004.4002.1 0.53 -0.3
3,878,083 - Xcc-8004.4002.1 0.53 +0.0
3,878,083 - Xcc-8004.4002.1 0.53 -0.4
3,878,083 - Xcc-8004.4002.1 0.53 +0.9
3,878,126 - Xcc-8004.4002.1 0.56 -2.1
3,878,126 - Xcc-8004.4002.1 0.56 -0.7
3,878,143 + Xcc-8004.4002.1 0.57 +1.7
3,878,143 + Xcc-8004.4002.1 0.57 -2.6
3,878,144 - Xcc-8004.4002.1 0.57 +3.4
3,878,144 - Xcc-8004.4002.1 0.57 -0.4
3,878,144 - Xcc-8004.4002.1 0.57 +0.7
3,878,233 + Xcc-8004.4002.1 0.62 -0.6
3,878,233 + Xcc-8004.4002.1 0.62 -1.4
3,878,234 - Xcc-8004.4002.1 0.62 -1.7
3,878,234 - Xcc-8004.4002.1 0.62 -1.7
3,878,234 - Xcc-8004.4002.1 0.62 -0.9
3,878,292 + Xcc-8004.4002.1 0.66 +0.6
3,878,292 + Xcc-8004.4002.1 0.66 +0.9
3,878,293 - Xcc-8004.4002.1 0.66 +0.2
3,878,318 + Xcc-8004.4002.1 0.68 -0.7
3,878,318 + Xcc-8004.4002.1 0.68 +0.4
3,878,318 + Xcc-8004.4002.1 0.68 -1.0
3,878,318 + Xcc-8004.4002.1 0.68 -0.2
3,878,319 - Xcc-8004.4002.1 0.68 +1.3
3,878,319 - Xcc-8004.4002.1 0.68 +1.9
3,878,416 - Xcc-8004.4002.1 0.74 +1.5
3,878,416 - Xcc-8004.4002.1 0.74 -0.3
3,878,466 + Xcc-8004.4002.1 0.77 +2.8
3,878,466 + Xcc-8004.4002.1 0.77 +1.6
3,878,466 + Xcc-8004.4002.1 0.77 -1.0
3,878,466 + Xcc-8004.4002.1 0.77 -2.2
3,878,466 + Xcc-8004.4002.1 0.77 -1.6
3,878,466 + Xcc-8004.4002.1 0.77 +2.6
3,878,467 - Xcc-8004.4002.1 0.77 +0.7
3,878,467 - Xcc-8004.4002.1 0.77 +0.1
3,878,473 + Xcc-8004.4002.1 0.77 -0.4
3,878,473 + Xcc-8004.4002.1 0.77 -0.3
3,878,473 + Xcc-8004.4002.1 0.77 +0.4
3,878,473 + Xcc-8004.4002.1 0.77 +0.1
3,878,474 - Xcc-8004.4002.1 0.77 +1.0
3,878,474 - Xcc-8004.4002.1 0.77 -1.6
3,878,474 - Xcc-8004.4002.1 0.77 -1.7
3,878,474 - Xcc-8004.4002.1 0.77 +1.0
3,878,793 + -1.8
3,878,794 - +0.7
3,878,794 - -0.9
3,878,859 + +1.8
3,878,859 + +2.4
3,878,859 + +0.1
3,878,859 + -1.1
3,878,860 - +1.6
3,878,860 - -0.4
3,878,860 - +3.6
3,878,860 - +0.5
3,878,860 - -1.2
3,878,860 - -0.3
3,878,868 + Xcc-8004.4003.1 0.12 -0.1
3,878,868 + Xcc-8004.4003.1 0.12 +0.7
3,878,868 + Xcc-8004.4003.1 0.12 -2.2
3,878,868 + Xcc-8004.4003.1 0.12 +1.2
3,878,868 + Xcc-8004.4003.1 0.12 -0.8
3,878,869 - Xcc-8004.4003.1 0.13 -0.6
3,878,869 - Xcc-8004.4003.1 0.13 +2.0
3,878,869 - Xcc-8004.4003.1 0.13 +1.6
3,878,869 - Xcc-8004.4003.1 0.13 -0.6
3,878,869 - Xcc-8004.4003.1 0.13 -1.0
3,878,869 - Xcc-8004.4003.1 0.13 -2.1
3,878,869 - Xcc-8004.4003.1 0.13 -1.1
3,878,869 - Xcc-8004.4003.1 0.13 -1.0
3,878,942 + Xcc-8004.4003.1 0.48 -2.0
3,878,942 + Xcc-8004.4003.1 0.48 +0.6
3,878,943 - Xcc-8004.4003.1 0.48 -0.8
3,878,943 - Xcc-8004.4003.1 0.48 +0.7
3,878,956 + Xcc-8004.4003.1 0.55 -1.8
3,878,956 + Xcc-8004.4003.1 0.55 +1.4
3,878,957 - Xcc-8004.4003.1 0.55 -1.2
3,879,107 + Xcc-8004.4004.1 0.14 +0.5
3,879,248 + Xcc-8004.4004.1 0.48 -1.8
3,879,248 + Xcc-8004.4004.1 0.48 +1.1
3,879,248 + Xcc-8004.4004.1 0.48 +0.5
3,879,249 - Xcc-8004.4004.1 0.48 +1.8
3,879,249 - Xcc-8004.4004.1 0.48 +0.9
3,879,249 - Xcc-8004.4004.1 0.48 +0.0
3,879,249 - Xcc-8004.4004.1 0.48 +1.4
3,879,249 - Xcc-8004.4004.1 0.48 +2.7
3,879,360 + Xcc-8004.4004.1 0.75 +0.3
3,879,388 - Xcc-8004.4004.1 0.81 -0.3
3,879,388 - Xcc-8004.4004.1 0.81 +0.5
3,879,425 + -0.8
3,879,426 - +0.9
3,879,426 - -1.8
3,879,426 - +0.2
3,879,530 + +0.5
3,879,530 + -1.4
3,879,531 - +0.4
3,879,738 - Xcc-8004.4005.1 0.41 -2.0
3,879,764 + Xcc-8004.4005.1 0.47 +0.4
3,879,764 + Xcc-8004.4005.1 0.47 +0.9
3,879,764 + Xcc-8004.4005.1 0.47 +0.3
3,879,764 + Xcc-8004.4005.1 0.47 -0.4
3,879,764 + Xcc-8004.4005.1 0.47 -0.3
3,879,764 + Xcc-8004.4005.1 0.47 +1.0
3,879,764 + Xcc-8004.4005.1 0.47 -2.2
3,879,764 + Xcc-8004.4005.1 0.47 -0.9
3,879,764 + Xcc-8004.4005.1 0.47 +1.0
3,879,764 + Xcc-8004.4005.1 0.47 -1.9
3,879,764 + Xcc-8004.4005.1 0.47 +0.1
3,879,764 + Xcc-8004.4005.1 0.47 -0.4
3,879,764 + Xcc-8004.4005.1 0.47 -0.0
3,879,764 + Xcc-8004.4005.1 0.47 +0.5
3,879,764 + Xcc-8004.4005.1 0.47 +0.4
3,879,765 - Xcc-8004.4005.1 0.47 +0.3
3,879,765 - Xcc-8004.4005.1 0.47 -0.0
3,879,765 - Xcc-8004.4005.1 0.47 +1.1
3,879,765 - Xcc-8004.4005.1 0.47 -0.1
3,879,765 - Xcc-8004.4005.1 0.47 +1.3
3,879,765 - Xcc-8004.4005.1 0.47 +1.5
3,879,765 - Xcc-8004.4005.1 0.47 -1.6
3,879,765 - Xcc-8004.4005.1 0.47 -0.2
3,879,765 - Xcc-8004.4005.1 0.47 +0.1
3,879,765 - Xcc-8004.4005.1 0.47 -0.9
3,879,765 - Xcc-8004.4005.1 0.47 +1.0
3,879,765 - Xcc-8004.4005.1 0.47 +3.1
3,879,765 - Xcc-8004.4005.1 0.47 +0.8
3,879,765 - Xcc-8004.4005.1 0.47 +1.5
3,879,765 - Xcc-8004.4005.1 0.47 +0.8
3,879,765 - Xcc-8004.4005.1 0.47 -0.2
3,879,765 - Xcc-8004.4005.1 0.47 -0.2
3,880,023 + -0.6
3,880,024 - -1.0
3,880,024 - -0.4
3,880,034 + +1.4
3,880,034 + +0.9
3,880,034 + +0.1
3,880,035 - +0.8
3,880,171 + +1.2
3,880,243 - Xcc-8004.4006.1 0.10 -0.2
3,880,243 - Xcc-8004.4006.1 0.10 -0.8
3,880,367 - Xcc-8004.4006.1 0.17 +0.1
3,880,367 - Xcc-8004.4006.1 0.17 -0.4

Or see this region's nucleotide sequence