Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3923.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3921.1 and Xcc-8004.3922.1 are separated by 9 nucleotidesXcc-8004.3922.1 and Xcc-8004.3923.1 are separated by 24 nucleotidesXcc-8004.3923.1 and Xcc-8004.3924.1 overlap by 4 nucleotides Xcc-8004.3921.1: Xcc-8004.3921.1 - Alpha-1,2-mannosidase, at 3,795,548 to 3,797,896 Xcc-8004.3921.1 Xcc-8004.3922.1: Xcc-8004.3922.1 - FIG01210602: hypothetical protein, at 3,797,906 to 3,798,781 Xcc-8004.3922.1 Xcc-8004.3923.1: Xcc-8004.3923.1 - Short-chain dehydrogenase/reductase SDR, at 3,798,806 to 3,799,708 Xcc-8004.3923.1 Xcc-8004.3924.1: Xcc-8004.3924.1 - Glucoamylase (EC 3.2.1.3), at 3,799,705 to 3,801,510 Xcc-8004.3924.1 Position (kb) 3798 3799 3800Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3797.877 kb on - strandat 3798.473 kb on - strand, within Xcc-8004.3922.1at 3798.531 kb on + strand, within Xcc-8004.3922.1at 3798.531 kb on + strand, within Xcc-8004.3922.1at 3798.531 kb on + strand, within Xcc-8004.3922.1at 3798.532 kb on - strand, within Xcc-8004.3922.1at 3798.532 kb on - strand, within Xcc-8004.3922.1at 3798.534 kb on + strand, within Xcc-8004.3922.1at 3798.535 kb on - strand, within Xcc-8004.3922.1at 3798.535 kb on - strand, within Xcc-8004.3922.1at 3798.660 kb on + strand, within Xcc-8004.3922.1at 3798.660 kb on + strand, within Xcc-8004.3922.1at 3798.661 kb on - strand, within Xcc-8004.3922.1at 3798.661 kb on - strand, within Xcc-8004.3922.1at 3798.828 kb on - strandat 3799.061 kb on + strand, within Xcc-8004.3923.1at 3799.307 kb on + strand, within Xcc-8004.3923.1at 3799.392 kb on - strand, within Xcc-8004.3923.1at 3799.392 kb on - strand, within Xcc-8004.3923.1at 3799.628 kb on + strandat 3799.628 kb on + strandat 3799.629 kb on - strandat 3799.658 kb on + strandat 3799.658 kb on + strandat 3799.658 kb on + strandat 3799.659 kb on - strandat 3799.659 kb on - strandat 3799.659 kb on - strandat 3800.101 kb on + strand, within Xcc-8004.3924.1at 3800.102 kb on - strand, within Xcc-8004.3924.1at 3800.401 kb on + strand, within Xcc-8004.3924.1at 3800.401 kb on + strand, within Xcc-8004.3924.1at 3800.401 kb on + strand, within Xcc-8004.3924.1at 3800.402 kb on - strand, within Xcc-8004.3924.1at 3800.402 kb on - strand, within Xcc-8004.3924.1at 3800.402 kb on - strand, within Xcc-8004.3924.1at 3800.496 kb on + strand, within Xcc-8004.3924.1at 3800.497 kb on - strand, within Xcc-8004.3924.1at 3800.540 kb on - strand, within Xcc-8004.3924.1at 3800.545 kb on + strand, within Xcc-8004.3924.1at 3800.569 kb on + strand, within Xcc-8004.3924.1at 3800.570 kb on - strand, within Xcc-8004.3924.1at 3800.677 kb on + strand, within Xcc-8004.3924.1at 3800.678 kb on - strand, within Xcc-8004.3924.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,797,877 - -1.4
3,798,473 - Xcc-8004.3922.1 0.65 +1.6
3,798,531 + Xcc-8004.3922.1 0.71 +0.2
3,798,531 + Xcc-8004.3922.1 0.71 +0.4
3,798,531 + Xcc-8004.3922.1 0.71 -0.4
3,798,532 - Xcc-8004.3922.1 0.71 -1.5
3,798,532 - Xcc-8004.3922.1 0.71 +3.5
3,798,534 + Xcc-8004.3922.1 0.72 +0.7
3,798,535 - Xcc-8004.3922.1 0.72 +1.5
3,798,535 - Xcc-8004.3922.1 0.72 -0.1
3,798,660 + Xcc-8004.3922.1 0.86 +0.1
3,798,660 + Xcc-8004.3922.1 0.86 +0.6
3,798,661 - Xcc-8004.3922.1 0.86 -1.3
3,798,661 - Xcc-8004.3922.1 0.86 -0.4
3,798,828 - +1.5
3,799,061 + Xcc-8004.3923.1 0.28 -2.5
3,799,307 + Xcc-8004.3923.1 0.55 -1.7
3,799,392 - Xcc-8004.3923.1 0.65 -0.6
3,799,392 - Xcc-8004.3923.1 0.65 -1.3
3,799,628 + +0.0
3,799,628 + +0.4
3,799,629 - -1.4
3,799,658 + -3.3
3,799,658 + +0.0
3,799,658 + -2.0
3,799,659 - -0.0
3,799,659 - -0.7
3,799,659 - -0.7
3,800,101 + Xcc-8004.3924.1 0.22 +2.6
3,800,102 - Xcc-8004.3924.1 0.22 -0.2
3,800,401 + Xcc-8004.3924.1 0.39 +1.2
3,800,401 + Xcc-8004.3924.1 0.39 -0.5
3,800,401 + Xcc-8004.3924.1 0.39 -0.3
3,800,402 - Xcc-8004.3924.1 0.39 -1.0
3,800,402 - Xcc-8004.3924.1 0.39 -0.2
3,800,402 - Xcc-8004.3924.1 0.39 -0.0
3,800,496 + Xcc-8004.3924.1 0.44 +1.3
3,800,497 - Xcc-8004.3924.1 0.44 +2.0
3,800,540 - Xcc-8004.3924.1 0.46 -0.0
3,800,545 + Xcc-8004.3924.1 0.47 +0.5
3,800,569 + Xcc-8004.3924.1 0.48 +0.2
3,800,570 - Xcc-8004.3924.1 0.48 +0.9
3,800,677 + Xcc-8004.3924.1 0.54 +1.2
3,800,678 - Xcc-8004.3924.1 0.54 +3.0

Or see this region's nucleotide sequence