Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3832.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3830.1 and Xcc-8004.3831.1 overlap by 1 nucleotidesXcc-8004.3831.1 and Xcc-8004.3832.1 are separated by 233 nucleotidesXcc-8004.3832.1 and Xcc-8004.3833.1 are separated by 54 nucleotides Xcc-8004.3830.1: Xcc-8004.3830.1 - Excinuclease ABC subunit A, at 3,705,660 to 3,708,728 Xcc-8004.3830.1 Xcc-8004.3831.1: Xcc-8004.3831.1 - 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23), at 3,708,728 to 3,709,132 Xcc-8004.3831.1 Xcc-8004.3832.1: Xcc-8004.3832.1 - Enoyl-CoA hydratase (EC 4.2.1.17), at 3,709,366 to 3,710,136 Xcc-8004.3832.1 Xcc-8004.3833.1: Xcc-8004.3833.1 - Acyl-CoA thioesterase II (EC 3.1.2.-), at 3,710,191 to 3,711,096 Xcc-8004.3833.1 Position (kb) 3709 3710 3711Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3708.555 kb on + strandat 3708.815 kb on + strand, within Xcc-8004.3831.1at 3708.816 kb on - strand, within Xcc-8004.3831.1at 3708.920 kb on + strand, within Xcc-8004.3831.1at 3708.920 kb on + strand, within Xcc-8004.3831.1at 3708.920 kb on + strand, within Xcc-8004.3831.1at 3708.920 kb on + strand, within Xcc-8004.3831.1at 3708.920 kb on + strand, within Xcc-8004.3831.1at 3708.920 kb on + strand, within Xcc-8004.3831.1at 3708.921 kb on - strand, within Xcc-8004.3831.1at 3708.921 kb on - strand, within Xcc-8004.3831.1at 3708.921 kb on - strand, within Xcc-8004.3831.1at 3708.921 kb on - strand, within Xcc-8004.3831.1at 3709.040 kb on + strand, within Xcc-8004.3831.1at 3709.076 kb on - strand, within Xcc-8004.3831.1at 3709.165 kb on - strandat 3709.337 kb on + strandat 3709.337 kb on + strandat 3709.338 kb on - strandat 3709.524 kb on + strand, within Xcc-8004.3832.1at 3709.524 kb on + strand, within Xcc-8004.3832.1at 3709.712 kb on - strand, within Xcc-8004.3832.1at 3709.751 kb on - strand, within Xcc-8004.3832.1at 3710.077 kb on + strandat 3710.078 kb on - strandat 3710.134 kb on + strandat 3710.134 kb on + strandat 3710.135 kb on - strandat 3710.135 kb on - strandat 3710.135 kb on - strandat 3710.155 kb on + strandat 3710.157 kb on + strandat 3710.157 kb on + strandat 3710.157 kb on + strandat 3710.157 kb on + strandat 3710.157 kb on + strandat 3710.157 kb on + strandat 3710.157 kb on + strandat 3710.158 kb on - strandat 3710.158 kb on - strandat 3710.158 kb on - strandat 3710.158 kb on - strandat 3710.299 kb on + strand, within Xcc-8004.3833.1at 3710.299 kb on + strand, within Xcc-8004.3833.1at 3710.299 kb on + strand, within Xcc-8004.3833.1at 3710.299 kb on + strand, within Xcc-8004.3833.1at 3710.300 kb on - strand, within Xcc-8004.3833.1at 3710.300 kb on - strand, within Xcc-8004.3833.1at 3710.300 kb on - strand, within Xcc-8004.3833.1at 3710.300 kb on - strand, within Xcc-8004.3833.1at 3710.300 kb on - strand, within Xcc-8004.3833.1at 3710.300 kb on - strand, within Xcc-8004.3833.1at 3710.300 kb on - strand, within Xcc-8004.3833.1at 3710.300 kb on - strand, within Xcc-8004.3833.1at 3710.300 kb on - strand, within Xcc-8004.3833.1at 3710.300 kb on - strand, within Xcc-8004.3833.1at 3710.300 kb on - strand, within Xcc-8004.3833.1at 3710.428 kb on + strand, within Xcc-8004.3833.1at 3710.429 kb on - strand, within Xcc-8004.3833.1at 3710.429 kb on - strand, within Xcc-8004.3833.1at 3710.803 kb on + strand, within Xcc-8004.3833.1at 3710.804 kb on - strand, within Xcc-8004.3833.1at 3710.804 kb on - strand, within Xcc-8004.3833.1at 3710.857 kb on + strand, within Xcc-8004.3833.1at 3710.857 kb on + strand, within Xcc-8004.3833.1at 3710.857 kb on + strand, within Xcc-8004.3833.1at 3710.858 kb on - strand, within Xcc-8004.3833.1at 3710.858 kb on - strand, within Xcc-8004.3833.1at 3710.858 kb on - strand, within Xcc-8004.3833.1at 3710.858 kb on - strand, within Xcc-8004.3833.1at 3710.860 kb on + strand, within Xcc-8004.3833.1at 3710.860 kb on + strand, within Xcc-8004.3833.1at 3710.860 kb on + strand, within Xcc-8004.3833.1at 3710.860 kb on + strand, within Xcc-8004.3833.1at 3710.860 kb on + strand, within Xcc-8004.3833.1at 3710.860 kb on + strand, within Xcc-8004.3833.1at 3710.860 kb on + strand, within Xcc-8004.3833.1at 3710.860 kb on + strand, within Xcc-8004.3833.1at 3710.861 kb on - strand, within Xcc-8004.3833.1at 3710.861 kb on - strand, within Xcc-8004.3833.1at 3710.941 kb on + strand, within Xcc-8004.3833.1at 3710.941 kb on + strand, within Xcc-8004.3833.1at 3710.942 kb on - strand, within Xcc-8004.3833.1at 3710.942 kb on - strand, within Xcc-8004.3833.1at 3711.053 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,708,555 + -2.3
3,708,815 + Xcc-8004.3831.1 0.21 -1.3
3,708,816 - Xcc-8004.3831.1 0.22 +0.7
3,708,920 + Xcc-8004.3831.1 0.47 +2.4
3,708,920 + Xcc-8004.3831.1 0.47 +0.7
3,708,920 + Xcc-8004.3831.1 0.47 +3.1
3,708,920 + Xcc-8004.3831.1 0.47 +0.2
3,708,920 + Xcc-8004.3831.1 0.47 -1.7
3,708,920 + Xcc-8004.3831.1 0.47 -0.2
3,708,921 - Xcc-8004.3831.1 0.48 -2.0
3,708,921 - Xcc-8004.3831.1 0.48 +0.1
3,708,921 - Xcc-8004.3831.1 0.48 +0.7
3,708,921 - Xcc-8004.3831.1 0.48 -0.7
3,709,040 + Xcc-8004.3831.1 0.77 +1.5
3,709,076 - Xcc-8004.3831.1 0.86 +0.5
3,709,165 - +1.2
3,709,337 + +0.2
3,709,337 + +0.0
3,709,338 - -1.4
3,709,524 + Xcc-8004.3832.1 0.20 +0.8
3,709,524 + Xcc-8004.3832.1 0.20 +0.2
3,709,712 - Xcc-8004.3832.1 0.45 +3.0
3,709,751 - Xcc-8004.3832.1 0.50 +0.5
3,710,077 + -0.4
3,710,078 - +2.1
3,710,134 + -1.2
3,710,134 + -0.3
3,710,135 - +2.3
3,710,135 - -1.5
3,710,135 - -0.2
3,710,155 + +0.2
3,710,157 + -0.8
3,710,157 + +1.7
3,710,157 + +0.7
3,710,157 + +1.8
3,710,157 + -0.3
3,710,157 + -0.8
3,710,157 + +0.5
3,710,158 - +0.2
3,710,158 - -0.0
3,710,158 - +0.3
3,710,158 - -0.8
3,710,299 + Xcc-8004.3833.1 0.12 +2.3
3,710,299 + Xcc-8004.3833.1 0.12 -0.8
3,710,299 + Xcc-8004.3833.1 0.12 +1.3
3,710,299 + Xcc-8004.3833.1 0.12 -0.9
3,710,300 - Xcc-8004.3833.1 0.12 +0.5
3,710,300 - Xcc-8004.3833.1 0.12 -3.1
3,710,300 - Xcc-8004.3833.1 0.12 -0.7
3,710,300 - Xcc-8004.3833.1 0.12 -1.5
3,710,300 - Xcc-8004.3833.1 0.12 +1.5
3,710,300 - Xcc-8004.3833.1 0.12 +0.2
3,710,300 - Xcc-8004.3833.1 0.12 +0.2
3,710,300 - Xcc-8004.3833.1 0.12 -0.8
3,710,300 - Xcc-8004.3833.1 0.12 +0.9
3,710,300 - Xcc-8004.3833.1 0.12 -3.1
3,710,300 - Xcc-8004.3833.1 0.12 +2.4
3,710,428 + Xcc-8004.3833.1 0.26 -0.0
3,710,429 - Xcc-8004.3833.1 0.26 -0.2
3,710,429 - Xcc-8004.3833.1 0.26 -0.7
3,710,803 + Xcc-8004.3833.1 0.68 -1.2
3,710,804 - Xcc-8004.3833.1 0.68 -2.1
3,710,804 - Xcc-8004.3833.1 0.68 -0.7
3,710,857 + Xcc-8004.3833.1 0.74 -0.2
3,710,857 + Xcc-8004.3833.1 0.74 +1.1
3,710,857 + Xcc-8004.3833.1 0.74 +0.0
3,710,858 - Xcc-8004.3833.1 0.74 -1.0
3,710,858 - Xcc-8004.3833.1 0.74 -0.5
3,710,858 - Xcc-8004.3833.1 0.74 -0.6
3,710,858 - Xcc-8004.3833.1 0.74 +0.9
3,710,860 + Xcc-8004.3833.1 0.74 +2.6
3,710,860 + Xcc-8004.3833.1 0.74 -0.3
3,710,860 + Xcc-8004.3833.1 0.74 +1.5
3,710,860 + Xcc-8004.3833.1 0.74 -1.0
3,710,860 + Xcc-8004.3833.1 0.74 -1.0
3,710,860 + Xcc-8004.3833.1 0.74 +0.1
3,710,860 + Xcc-8004.3833.1 0.74 +0.8
3,710,860 + Xcc-8004.3833.1 0.74 +0.5
3,710,861 - Xcc-8004.3833.1 0.74 +2.5
3,710,861 - Xcc-8004.3833.1 0.74 +0.7
3,710,941 + Xcc-8004.3833.1 0.83 -1.5
3,710,941 + Xcc-8004.3833.1 0.83 +0.7
3,710,942 - Xcc-8004.3833.1 0.83 -1.8
3,710,942 - Xcc-8004.3833.1 0.83 -1.6
3,711,053 + +1.0

Or see this region's nucleotide sequence