Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3830.1 and Xcc-8004.3831.1 overlap by 1 nucleotides Xcc-8004.3831.1 and Xcc-8004.3832.1 are separated by 233 nucleotides
Xcc-8004.3830.1: Xcc-8004.3830.1 - Excinuclease ABC subunit A, at 3,705,660 to 3,708,728
Xcc-8004.3830.1
Xcc-8004.3831.1: Xcc-8004.3831.1 - 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23), at 3,708,728 to 3,709,132
Xcc-8004.3831.1
Xcc-8004.3832.1: Xcc-8004.3832.1 - Enoyl-CoA hydratase (EC 4.2.1.17), at 3,709,366 to 3,710,136
Xcc-8004.3832.1
Position (kb) 3708
3709
3710 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3707.874 kb on + strand, within Xcc-8004.3830.1 at 3707.875 kb on - strand, within Xcc-8004.3830.1 at 3707.941 kb on - strand, within Xcc-8004.3830.1 at 3707.941 kb on - strand, within Xcc-8004.3830.1 at 3708.042 kb on + strand, within Xcc-8004.3830.1 at 3708.043 kb on - strand, within Xcc-8004.3830.1 at 3708.043 kb on - strand, within Xcc-8004.3830.1 at 3708.043 kb on - strand, within Xcc-8004.3830.1 at 3708.043 kb on - strand, within Xcc-8004.3830.1 at 3708.043 kb on - strand, within Xcc-8004.3830.1 at 3708.043 kb on - strand, within Xcc-8004.3830.1 at 3708.043 kb on - strand, within Xcc-8004.3830.1 at 3708.075 kb on + strand, within Xcc-8004.3830.1 at 3708.075 kb on + strand, within Xcc-8004.3830.1 at 3708.075 kb on + strand, within Xcc-8004.3830.1 at 3708.076 kb on - strand, within Xcc-8004.3830.1 at 3708.076 kb on - strand, within Xcc-8004.3830.1 at 3708.076 kb on - strand, within Xcc-8004.3830.1 at 3708.076 kb on - strand, within Xcc-8004.3830.1 at 3708.076 kb on - strand, within Xcc-8004.3830.1 at 3708.102 kb on + strand, within Xcc-8004.3830.1 at 3708.222 kb on + strand, within Xcc-8004.3830.1 at 3708.222 kb on + strand, within Xcc-8004.3830.1 at 3708.223 kb on - strand, within Xcc-8004.3830.1 at 3708.324 kb on + strand, within Xcc-8004.3830.1 at 3708.324 kb on + strand, within Xcc-8004.3830.1 at 3708.325 kb on - strand, within Xcc-8004.3830.1 at 3708.325 kb on - strand, within Xcc-8004.3830.1 at 3708.325 kb on - strand, within Xcc-8004.3830.1 at 3708.325 kb on - strand, within Xcc-8004.3830.1 at 3708.555 kb on + strand at 3708.815 kb on + strand, within Xcc-8004.3831.1 at 3708.816 kb on - strand, within Xcc-8004.3831.1 at 3708.920 kb on + strand, within Xcc-8004.3831.1 at 3708.920 kb on + strand, within Xcc-8004.3831.1 at 3708.920 kb on + strand, within Xcc-8004.3831.1 at 3708.920 kb on + strand, within Xcc-8004.3831.1 at 3708.920 kb on + strand, within Xcc-8004.3831.1 at 3708.920 kb on + strand, within Xcc-8004.3831.1 at 3708.921 kb on - strand, within Xcc-8004.3831.1 at 3708.921 kb on - strand, within Xcc-8004.3831.1 at 3708.921 kb on - strand, within Xcc-8004.3831.1 at 3708.921 kb on - strand, within Xcc-8004.3831.1 at 3709.040 kb on + strand, within Xcc-8004.3831.1 at 3709.076 kb on - strand, within Xcc-8004.3831.1 at 3709.165 kb on - strand at 3709.337 kb on + strand at 3709.337 kb on + strand at 3709.338 kb on - strand at 3709.524 kb on + strand, within Xcc-8004.3832.1 at 3709.524 kb on + strand, within Xcc-8004.3832.1 at 3709.712 kb on - strand, within Xcc-8004.3832.1 at 3709.751 kb on - strand, within Xcc-8004.3832.1 at 3710.077 kb on + strand at 3710.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 3,707,874 + Xcc-8004.3830.1 0.72 +0.1 3,707,875 - Xcc-8004.3830.1 0.72 +2.5 3,707,941 - Xcc-8004.3830.1 0.74 -0.5 3,707,941 - Xcc-8004.3830.1 0.74 -2.3 3,708,042 + Xcc-8004.3830.1 0.78 -0.2 3,708,043 - Xcc-8004.3830.1 0.78 -0.0 3,708,043 - Xcc-8004.3830.1 0.78 -1.5 3,708,043 - Xcc-8004.3830.1 0.78 -1.3 3,708,043 - Xcc-8004.3830.1 0.78 -0.3 3,708,043 - Xcc-8004.3830.1 0.78 +0.1 3,708,043 - Xcc-8004.3830.1 0.78 +0.4 3,708,043 - Xcc-8004.3830.1 0.78 +1.0 3,708,075 + Xcc-8004.3830.1 0.79 -1.5 3,708,075 + Xcc-8004.3830.1 0.79 +1.2 3,708,075 + Xcc-8004.3830.1 0.79 -2.4 3,708,076 - Xcc-8004.3830.1 0.79 -0.0 3,708,076 - Xcc-8004.3830.1 0.79 +2.3 3,708,076 - Xcc-8004.3830.1 0.79 -1.8 3,708,076 - Xcc-8004.3830.1 0.79 -3.2 3,708,076 - Xcc-8004.3830.1 0.79 +0.0 3,708,102 + Xcc-8004.3830.1 0.80 -1.4 3,708,222 + Xcc-8004.3830.1 0.83 -1.8 3,708,222 + Xcc-8004.3830.1 0.83 +0.1 3,708,223 - Xcc-8004.3830.1 0.84 -2.2 3,708,324 + Xcc-8004.3830.1 0.87 -2.1 3,708,324 + Xcc-8004.3830.1 0.87 +0.8 3,708,325 - Xcc-8004.3830.1 0.87 -0.3 3,708,325 - Xcc-8004.3830.1 0.87 -2.5 3,708,325 - Xcc-8004.3830.1 0.87 +1.3 3,708,325 - Xcc-8004.3830.1 0.87 +1.0 3,708,555 + -2.3 3,708,815 + Xcc-8004.3831.1 0.21 -1.3 3,708,816 - Xcc-8004.3831.1 0.22 +0.7 3,708,920 + Xcc-8004.3831.1 0.47 +2.4 3,708,920 + Xcc-8004.3831.1 0.47 +0.7 3,708,920 + Xcc-8004.3831.1 0.47 +3.1 3,708,920 + Xcc-8004.3831.1 0.47 +0.2 3,708,920 + Xcc-8004.3831.1 0.47 -1.7 3,708,920 + Xcc-8004.3831.1 0.47 -0.2 3,708,921 - Xcc-8004.3831.1 0.48 -2.0 3,708,921 - Xcc-8004.3831.1 0.48 +0.1 3,708,921 - Xcc-8004.3831.1 0.48 +0.7 3,708,921 - Xcc-8004.3831.1 0.48 -0.7 3,709,040 + Xcc-8004.3831.1 0.77 +1.5 3,709,076 - Xcc-8004.3831.1 0.86 +0.5 3,709,165 - +1.2 3,709,337 + +0.2 3,709,337 + +0.0 3,709,338 - -1.4 3,709,524 + Xcc-8004.3832.1 0.20 +0.8 3,709,524 + Xcc-8004.3832.1 0.20 +0.2 3,709,712 - Xcc-8004.3832.1 0.45 +3.0 3,709,751 - Xcc-8004.3832.1 0.50 +0.5 3,710,077 + -0.4 3,710,078 - +2.1
Or see this region's nucleotide sequence