Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3798.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3797.1 and Xcc-8004.3798.1 overlap by 10 nucleotidesXcc-8004.3798.1 and Xcc-8004.3799.1 overlap by 4 nucleotidesXcc-8004.3799.1 and Xcc-8004.3800.1 are separated by 1 nucleotides Xcc-8004.3796.1: Xcc-8004.3796.1 - Putative SigmaB asociated two-component system sensor protein, at 3,672,432 to 3,673,310 Xcc-8004.3796.1 Xcc-8004.3797.1: Xcc-8004.3797.1 - hypothetical protein, at 3,673,307 to 3,674,317 Xcc-8004.3797.1 Xcc-8004.3798.1: Xcc-8004.3798.1 - Anti-sigma B factor RsbT, at 3,674,308 to 3,674,709 Xcc-8004.3798.1 Xcc-8004.3799.1: Xcc-8004.3799.1 - RsbS, negative regulator of sigma-B, at 3,674,706 to 3,675,068 Xcc-8004.3799.1 Xcc-8004.3800.1: Xcc-8004.3800.1 - RsbR, positive regulator of sigma-B, at 3,675,070 to 3,675,912 Xcc-8004.3800.1 Position (kb) 3674 3675Strain fitness (log2 ratio) -2 -1 0 1at 3673.882 kb on - strand, within Xcc-8004.3797.1at 3673.953 kb on + strand, within Xcc-8004.3797.1at 3673.953 kb on + strand, within Xcc-8004.3797.1at 3673.954 kb on - strand, within Xcc-8004.3797.1at 3673.954 kb on - strand, within Xcc-8004.3797.1at 3674.022 kb on + strand, within Xcc-8004.3797.1at 3674.023 kb on - strand, within Xcc-8004.3797.1at 3674.023 kb on - strand, within Xcc-8004.3797.1at 3674.023 kb on - strand, within Xcc-8004.3797.1at 3674.023 kb on - strand, within Xcc-8004.3797.1at 3674.023 kb on - strand, within Xcc-8004.3797.1at 3674.023 kb on - strand, within Xcc-8004.3797.1at 3674.273 kb on + strandat 3674.378 kb on - strand, within Xcc-8004.3798.1at 3674.549 kb on + strand, within Xcc-8004.3798.1at 3674.549 kb on + strand, within Xcc-8004.3798.1at 3674.550 kb on - strand, within Xcc-8004.3798.1at 3674.559 kb on + strand, within Xcc-8004.3798.1at 3674.730 kb on + strandat 3674.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,673,882 - Xcc-8004.3797.1 0.57 -1.8
3,673,953 + Xcc-8004.3797.1 0.64 +1.2
3,673,953 + Xcc-8004.3797.1 0.64 -2.0
3,673,954 - Xcc-8004.3797.1 0.64 +1.3
3,673,954 - Xcc-8004.3797.1 0.64 -0.9
3,674,022 + Xcc-8004.3797.1 0.71 -0.7
3,674,023 - Xcc-8004.3797.1 0.71 -1.5
3,674,023 - Xcc-8004.3797.1 0.71 -2.0
3,674,023 - Xcc-8004.3797.1 0.71 +1.3
3,674,023 - Xcc-8004.3797.1 0.71 -1.4
3,674,023 - Xcc-8004.3797.1 0.71 +1.2
3,674,023 - Xcc-8004.3797.1 0.71 +0.4
3,674,273 + -0.3
3,674,378 - Xcc-8004.3798.1 0.17 +1.5
3,674,549 + Xcc-8004.3798.1 0.60 +0.8
3,674,549 + Xcc-8004.3798.1 0.60 +1.0
3,674,550 - Xcc-8004.3798.1 0.60 -1.2
3,674,559 + Xcc-8004.3798.1 0.62 +0.5
3,674,730 + -1.9
3,674,731 - -0.6

Or see this region's nucleotide sequence