Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.372.1 and Xcc-8004.373.1 overlap by 4 nucleotides Xcc-8004.373.1 and Xcc-8004.374.1 are separated by 38 nucleotides
Xcc-8004.372.1: Xcc-8004.372.1 - Endonuclease/Exonuclease/phosphatase family protein, at 354,521 to 355,282
Xcc-8004.372.1
Xcc-8004.373.1: Xcc-8004.373.1 - Cardiolipin synthetase (EC 2.7.8.-), at 355,279 to 356,298
Xcc-8004.373.1
Xcc-8004.374.1: Xcc-8004.374.1 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 356,337 to 357,917
Xcc-8004.374.1
Position (kb) 355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 354.328 kb on + strand at 354.328 kb on + strand at 354.328 kb on + strand at 354.328 kb on + strand at 354.329 kb on - strand at 354.329 kb on - strand at 354.352 kb on + strand at 354.353 kb on - strand at 354.353 kb on - strand at 354.356 kb on + strand at 354.356 kb on + strand at 354.357 kb on - strand at 354.371 kb on + strand at 354.371 kb on + strand at 354.732 kb on - strand, within Xcc-8004.372.1 at 354.737 kb on + strand, within Xcc-8004.372.1 at 354.738 kb on - strand, within Xcc-8004.372.1 at 354.738 kb on - strand, within Xcc-8004.372.1 at 354.770 kb on + strand, within Xcc-8004.372.1 at 354.888 kb on + strand, within Xcc-8004.372.1 at 354.889 kb on - strand, within Xcc-8004.372.1 at 354.930 kb on + strand, within Xcc-8004.372.1 at 354.931 kb on - strand, within Xcc-8004.372.1 at 355.181 kb on + strand, within Xcc-8004.372.1 at 355.181 kb on + strand, within Xcc-8004.372.1 at 355.182 kb on - strand, within Xcc-8004.372.1 at 355.182 kb on - strand, within Xcc-8004.372.1 at 355.182 kb on - strand, within Xcc-8004.372.1 at 355.271 kb on - strand at 355.349 kb on - strand at 355.349 kb on - strand at 355.349 kb on - strand at 355.349 kb on - strand at 355.363 kb on + strand at 355.485 kb on - strand, within Xcc-8004.373.1 at 355.611 kb on + strand, within Xcc-8004.373.1 at 355.611 kb on + strand, within Xcc-8004.373.1 at 355.611 kb on + strand, within Xcc-8004.373.1 at 355.611 kb on + strand, within Xcc-8004.373.1 at 355.612 kb on - strand, within Xcc-8004.373.1 at 355.875 kb on + strand, within Xcc-8004.373.1 at 355.922 kb on - strand, within Xcc-8004.373.1 at 355.972 kb on + strand, within Xcc-8004.373.1 at 355.972 kb on + strand, within Xcc-8004.373.1 at 355.973 kb on - strand, within Xcc-8004.373.1 at 356.137 kb on + strand, within Xcc-8004.373.1 at 356.137 kb on + strand, within Xcc-8004.373.1 at 356.256 kb on - strand at 356.297 kb on - strand at 356.297 kb on - strand at 356.438 kb on + strand at 356.438 kb on + strand at 356.438 kb on + strand at 356.438 kb on + strand at 356.438 kb on + strand at 356.439 kb on - strand at 356.439 kb on - strand at 356.440 kb on + strand at 356.440 kb on + strand at 356.608 kb on + strand, within Xcc-8004.374.1 at 356.666 kb on - strand, within Xcc-8004.374.1 at 356.726 kb on + strand, within Xcc-8004.374.1 at 356.726 kb on + strand, within Xcc-8004.374.1 at 356.726 kb on + strand, within Xcc-8004.374.1 at 356.839 kb on + strand, within Xcc-8004.374.1 at 356.839 kb on + strand, within Xcc-8004.374.1 at 356.839 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.182 kb on - strand, within Xcc-8004.374.1 at 357.273 kb on + strand, within Xcc-8004.374.1 at 357.273 kb on + strand, within Xcc-8004.374.1 at 357.280 kb on - strand, within Xcc-8004.374.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 354,328 + -1.1 354,328 + -2.3 354,328 + +1.1 354,328 + +0.1 354,329 - +2.0 354,329 - +0.9 354,352 + -1.5 354,353 - -0.9 354,353 - -0.4 354,356 + -0.2 354,356 + -2.2 354,357 - +1.6 354,371 + +0.5 354,371 + +0.9 354,732 - Xcc-8004.372.1 0.28 -0.9 354,737 + Xcc-8004.372.1 0.28 -1.8 354,738 - Xcc-8004.372.1 0.28 +1.4 354,738 - Xcc-8004.372.1 0.28 +0.0 354,770 + Xcc-8004.372.1 0.33 -0.1 354,888 + Xcc-8004.372.1 0.48 -1.0 354,889 - Xcc-8004.372.1 0.48 +1.8 354,930 + Xcc-8004.372.1 0.54 +0.5 354,931 - Xcc-8004.372.1 0.54 -1.0 355,181 + Xcc-8004.372.1 0.87 -0.4 355,181 + Xcc-8004.372.1 0.87 -1.0 355,182 - Xcc-8004.372.1 0.87 +0.4 355,182 - Xcc-8004.372.1 0.87 +0.8 355,182 - Xcc-8004.372.1 0.87 +0.0 355,271 - -2.3 355,349 - +0.2 355,349 - -0.8 355,349 - -1.3 355,349 - -0.3 355,363 + -1.1 355,485 - Xcc-8004.373.1 0.20 -0.9 355,611 + Xcc-8004.373.1 0.33 +0.0 355,611 + Xcc-8004.373.1 0.33 -1.9 355,611 + Xcc-8004.373.1 0.33 -3.6 355,611 + Xcc-8004.373.1 0.33 -0.5 355,612 - Xcc-8004.373.1 0.33 -0.8 355,875 + Xcc-8004.373.1 0.58 -1.4 355,922 - Xcc-8004.373.1 0.63 +1.0 355,972 + Xcc-8004.373.1 0.68 +0.8 355,972 + Xcc-8004.373.1 0.68 -0.3 355,973 - Xcc-8004.373.1 0.68 +0.2 356,137 + Xcc-8004.373.1 0.84 +0.1 356,137 + Xcc-8004.373.1 0.84 -2.8 356,256 - +0.0 356,297 - -1.0 356,297 - +0.3 356,438 + -1.2 356,438 + +0.5 356,438 + +1.0 356,438 + +0.2 356,438 + -1.0 356,439 - -0.7 356,439 - -1.9 356,440 + -0.2 356,440 + +0.2 356,608 + Xcc-8004.374.1 0.17 -1.1 356,666 - Xcc-8004.374.1 0.21 -0.5 356,726 + Xcc-8004.374.1 0.25 +0.1 356,726 + Xcc-8004.374.1 0.25 +0.4 356,726 + Xcc-8004.374.1 0.25 -0.8 356,839 + Xcc-8004.374.1 0.32 +1.1 356,839 + Xcc-8004.374.1 0.32 -2.9 356,839 + Xcc-8004.374.1 0.32 +0.4 357,181 + Xcc-8004.374.1 0.53 +0.2 357,181 + Xcc-8004.374.1 0.53 +0.4 357,181 + Xcc-8004.374.1 0.53 +1.2 357,181 + Xcc-8004.374.1 0.53 +0.9 357,181 + Xcc-8004.374.1 0.53 +0.4 357,181 + Xcc-8004.374.1 0.53 +1.4 357,182 - Xcc-8004.374.1 0.53 -1.2 357,273 + Xcc-8004.374.1 0.59 +0.1 357,273 + Xcc-8004.374.1 0.59 +1.3 357,280 - Xcc-8004.374.1 0.60 +0.5
Or see this region's nucleotide sequence