Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3659.1 and Xcc-8004.3660.1 are separated by 96 nucleotides Xcc-8004.3660.1 and Xcc-8004.3661.1 are separated by 86 nucleotides Xcc-8004.3661.1 and Xcc-8004.3662.1 are separated by 88 nucleotides Xcc-8004.3662.1 and Xcc-8004.3663.1 overlap by 1 nucleotides
Xcc-8004.3659.1: Xcc-8004.3659.1 - Oxidoreductase, at 3,539,099 to 3,540,370
Xcc-8004.3659.1
Xcc-8004.3660.1: Xcc-8004.3660.1 - Cold shock protein CspD, at 3,540,467 to 3,540,673
Xcc-8004.3660.1
Xcc-8004.3661.1: Xcc-8004.3661.1 - 5'-methylthioadenosine phosphorylase (EC 2.4.2.28), at 3,540,760 to 3,541,512
Xcc-8004.3661.1
Xcc-8004.3662.1: Xcc-8004.3662.1 - Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8), at 3,541,601 to 3,542,155
Xcc-8004.3662.1
Xcc-8004.3663.1: Xcc-8004.3663.1 - Beta N-acetyl-glucosaminidase (EC 3.2.1.52), at 3,542,155 to 3,543,150
Xcc-8004.3663.1
Position (kb) 3540
3541
3542 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3539.779 kb on - strand, within Xcc-8004.3659.1 at 3539.779 kb on - strand, within Xcc-8004.3659.1 at 3539.779 kb on - strand, within Xcc-8004.3659.1 at 3539.779 kb on - strand, within Xcc-8004.3659.1 at 3539.802 kb on + strand, within Xcc-8004.3659.1 at 3539.802 kb on + strand, within Xcc-8004.3659.1 at 3539.803 kb on - strand, within Xcc-8004.3659.1 at 3539.803 kb on - strand, within Xcc-8004.3659.1 at 3539.850 kb on + strand, within Xcc-8004.3659.1 at 3539.850 kb on + strand, within Xcc-8004.3659.1 at 3539.850 kb on + strand, within Xcc-8004.3659.1 at 3539.850 kb on + strand, within Xcc-8004.3659.1 at 3539.851 kb on - strand, within Xcc-8004.3659.1 at 3539.851 kb on - strand, within Xcc-8004.3659.1 at 3539.929 kb on - strand, within Xcc-8004.3659.1 at 3540.144 kb on + strand, within Xcc-8004.3659.1 at 3540.144 kb on + strand, within Xcc-8004.3659.1 at 3540.144 kb on + strand, within Xcc-8004.3659.1 at 3540.144 kb on + strand, within Xcc-8004.3659.1 at 3540.144 kb on + strand, within Xcc-8004.3659.1 at 3540.145 kb on - strand, within Xcc-8004.3659.1 at 3540.145 kb on - strand, within Xcc-8004.3659.1 at 3540.145 kb on - strand, within Xcc-8004.3659.1 at 3540.145 kb on - strand, within Xcc-8004.3659.1 at 3540.525 kb on + strand, within Xcc-8004.3660.1 at 3540.525 kb on + strand, within Xcc-8004.3660.1 at 3540.525 kb on + strand, within Xcc-8004.3660.1 at 3540.525 kb on + strand, within Xcc-8004.3660.1 at 3540.526 kb on - strand, within Xcc-8004.3660.1 at 3540.526 kb on - strand, within Xcc-8004.3660.1 at 3540.526 kb on - strand, within Xcc-8004.3660.1 at 3540.526 kb on - strand, within Xcc-8004.3660.1 at 3540.526 kb on - strand, within Xcc-8004.3660.1 at 3540.710 kb on + strand at 3540.710 kb on + strand at 3540.710 kb on + strand at 3540.711 kb on - strand at 3540.734 kb on - strand at 3540.744 kb on + strand at 3540.744 kb on + strand at 3540.744 kb on + strand at 3540.744 kb on + strand at 3540.745 kb on - strand at 3540.745 kb on - strand at 3540.745 kb on - strand at 3540.745 kb on - strand at 3540.899 kb on + strand, within Xcc-8004.3661.1 at 3540.900 kb on - strand, within Xcc-8004.3661.1 at 3541.028 kb on + strand, within Xcc-8004.3661.1 at 3541.029 kb on - strand, within Xcc-8004.3661.1 at 3541.029 kb on - strand, within Xcc-8004.3661.1 at 3541.029 kb on - strand, within Xcc-8004.3661.1 at 3541.029 kb on - strand, within Xcc-8004.3661.1 at 3541.103 kb on + strand, within Xcc-8004.3661.1 at 3541.104 kb on - strand, within Xcc-8004.3661.1 at 3541.178 kb on + strand, within Xcc-8004.3661.1 at 3541.179 kb on - strand, within Xcc-8004.3661.1 at 3541.179 kb on - strand, within Xcc-8004.3661.1 at 3541.179 kb on - strand, within Xcc-8004.3661.1 at 3541.304 kb on + strand, within Xcc-8004.3661.1 at 3541.304 kb on + strand, within Xcc-8004.3661.1 at 3541.305 kb on - strand, within Xcc-8004.3661.1 at 3541.305 kb on - strand, within Xcc-8004.3661.1 at 3541.463 kb on + strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.464 kb on - strand at 3541.589 kb on - strand at 3541.589 kb on - strand at 3541.603 kb on - strand at 3541.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 3,539,779 - Xcc-8004.3659.1 0.53 -0.1 3,539,779 - Xcc-8004.3659.1 0.53 -1.4 3,539,779 - Xcc-8004.3659.1 0.53 -1.7 3,539,779 - Xcc-8004.3659.1 0.53 +1.2 3,539,802 + Xcc-8004.3659.1 0.55 -1.2 3,539,802 + Xcc-8004.3659.1 0.55 +0.8 3,539,803 - Xcc-8004.3659.1 0.55 +2.2 3,539,803 - Xcc-8004.3659.1 0.55 +0.5 3,539,850 + Xcc-8004.3659.1 0.59 -1.6 3,539,850 + Xcc-8004.3659.1 0.59 -0.6 3,539,850 + Xcc-8004.3659.1 0.59 -1.6 3,539,850 + Xcc-8004.3659.1 0.59 +0.6 3,539,851 - Xcc-8004.3659.1 0.59 +2.2 3,539,851 - Xcc-8004.3659.1 0.59 +2.5 3,539,929 - Xcc-8004.3659.1 0.65 +1.7 3,540,144 + Xcc-8004.3659.1 0.82 +1.8 3,540,144 + Xcc-8004.3659.1 0.82 -1.0 3,540,144 + Xcc-8004.3659.1 0.82 -1.1 3,540,144 + Xcc-8004.3659.1 0.82 -0.2 3,540,144 + Xcc-8004.3659.1 0.82 -1.3 3,540,145 - Xcc-8004.3659.1 0.82 +1.5 3,540,145 - Xcc-8004.3659.1 0.82 -2.2 3,540,145 - Xcc-8004.3659.1 0.82 +1.9 3,540,145 - Xcc-8004.3659.1 0.82 +0.3 3,540,525 + Xcc-8004.3660.1 0.28 +0.3 3,540,525 + Xcc-8004.3660.1 0.28 -0.8 3,540,525 + Xcc-8004.3660.1 0.28 -1.1 3,540,525 + Xcc-8004.3660.1 0.28 -1.8 3,540,526 - Xcc-8004.3660.1 0.29 +0.2 3,540,526 - Xcc-8004.3660.1 0.29 -1.9 3,540,526 - Xcc-8004.3660.1 0.29 -1.2 3,540,526 - Xcc-8004.3660.1 0.29 +0.2 3,540,526 - Xcc-8004.3660.1 0.29 -3.7 3,540,710 + -0.7 3,540,710 + -0.8 3,540,710 + -2.9 3,540,711 - +1.5 3,540,734 - +1.1 3,540,744 + +0.3 3,540,744 + -1.1 3,540,744 + -1.3 3,540,744 + -1.9 3,540,745 - +2.7 3,540,745 - -1.8 3,540,745 - +0.8 3,540,745 - -1.2 3,540,899 + Xcc-8004.3661.1 0.18 -0.8 3,540,900 - Xcc-8004.3661.1 0.19 -1.2 3,541,028 + Xcc-8004.3661.1 0.36 -0.7 3,541,029 - Xcc-8004.3661.1 0.36 -1.1 3,541,029 - Xcc-8004.3661.1 0.36 -1.5 3,541,029 - Xcc-8004.3661.1 0.36 +2.5 3,541,029 - Xcc-8004.3661.1 0.36 -1.7 3,541,103 + Xcc-8004.3661.1 0.46 -3.5 3,541,104 - Xcc-8004.3661.1 0.46 -0.1 3,541,178 + Xcc-8004.3661.1 0.56 +0.9 3,541,179 - Xcc-8004.3661.1 0.56 -0.5 3,541,179 - Xcc-8004.3661.1 0.56 -0.3 3,541,179 - Xcc-8004.3661.1 0.56 -1.9 3,541,304 + Xcc-8004.3661.1 0.72 +1.8 3,541,304 + Xcc-8004.3661.1 0.72 -1.4 3,541,305 - Xcc-8004.3661.1 0.72 -0.8 3,541,305 - Xcc-8004.3661.1 0.72 -0.6 3,541,463 + -1.1 3,541,464 - +0.7 3,541,464 - -0.6 3,541,464 - -1.6 3,541,464 - +0.5 3,541,464 - -0.7 3,541,589 - +0.6 3,541,589 - -0.1 3,541,603 - -0.4 3,541,603 - +0.8
Or see this region's nucleotide sequence