Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3655.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3654.1 and Xcc-8004.3655.1 overlap by 4 nucleotidesXcc-8004.3655.1 and Xcc-8004.3656.1 overlap by 4 nucleotides Xcc-8004.3654.1: Xcc-8004.3654.1 - hypothetical protein, at 3,533,039 to 3,534,049 Xcc-8004.3654.1 Xcc-8004.3655.1: Xcc-8004.3655.1 - FIG01210025: hypothetical protein, at 3,534,046 to 3,534,279 Xcc-8004.3655.1 Xcc-8004.3656.1: Xcc-8004.3656.1 - ATP-dependent DNA ligase (EC 6.5.1.1) LigC, at 3,534,276 to 3,535,880 Xcc-8004.3656.1 Position (kb) 3534 3535Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3533.096 kb on + strandat 3533.096 kb on + strandat 3533.096 kb on + strandat 3533.097 kb on - strandat 3533.119 kb on + strandat 3533.198 kb on + strand, within Xcc-8004.3654.1at 3533.199 kb on - strand, within Xcc-8004.3654.1at 3533.255 kb on + strand, within Xcc-8004.3654.1at 3533.255 kb on + strand, within Xcc-8004.3654.1at 3533.255 kb on + strand, within Xcc-8004.3654.1at 3533.256 kb on - strand, within Xcc-8004.3654.1at 3533.390 kb on + strand, within Xcc-8004.3654.1at 3533.390 kb on + strand, within Xcc-8004.3654.1at 3533.391 kb on - strand, within Xcc-8004.3654.1at 3533.480 kb on + strand, within Xcc-8004.3654.1at 3533.480 kb on + strand, within Xcc-8004.3654.1at 3533.567 kb on + strand, within Xcc-8004.3654.1at 3533.567 kb on + strand, within Xcc-8004.3654.1at 3533.567 kb on + strand, within Xcc-8004.3654.1at 3533.568 kb on - strand, within Xcc-8004.3654.1at 3533.568 kb on - strand, within Xcc-8004.3654.1at 3533.568 kb on - strand, within Xcc-8004.3654.1at 3533.573 kb on + strand, within Xcc-8004.3654.1at 3533.573 kb on + strand, within Xcc-8004.3654.1at 3533.573 kb on + strand, within Xcc-8004.3654.1at 3533.573 kb on + strand, within Xcc-8004.3654.1at 3533.573 kb on + strand, within Xcc-8004.3654.1at 3533.574 kb on - strand, within Xcc-8004.3654.1at 3533.574 kb on - strand, within Xcc-8004.3654.1at 3533.574 kb on - strand, within Xcc-8004.3654.1at 3533.574 kb on - strand, within Xcc-8004.3654.1at 3533.574 kb on - strand, within Xcc-8004.3654.1at 3533.739 kb on - strand, within Xcc-8004.3654.1at 3533.867 kb on + strand, within Xcc-8004.3654.1at 3533.867 kb on + strand, within Xcc-8004.3654.1at 3533.867 kb on + strand, within Xcc-8004.3654.1at 3533.867 kb on + strand, within Xcc-8004.3654.1at 3533.867 kb on + strand, within Xcc-8004.3654.1at 3533.868 kb on - strand, within Xcc-8004.3654.1at 3533.868 kb on - strand, within Xcc-8004.3654.1at 3533.868 kb on - strand, within Xcc-8004.3654.1at 3533.868 kb on - strand, within Xcc-8004.3654.1at 3534.070 kb on + strand, within Xcc-8004.3655.1at 3534.070 kb on + strand, within Xcc-8004.3655.1at 3534.297 kb on + strandat 3534.297 kb on + strandat 3534.354 kb on + strandat 3534.354 kb on + strandat 3534.355 kb on - strandat 3534.396 kb on + strandat 3534.396 kb on + strandat 3534.396 kb on + strandat 3534.396 kb on + strandat 3534.396 kb on + strandat 3534.396 kb on + strandat 3534.396 kb on + strandat 3534.396 kb on + strandat 3534.396 kb on + strandat 3534.397 kb on - strandat 3534.397 kb on - strandat 3534.397 kb on - strandat 3534.397 kb on - strandat 3534.397 kb on - strandat 3534.397 kb on - strandat 3534.513 kb on + strand, within Xcc-8004.3656.1at 3534.513 kb on + strand, within Xcc-8004.3656.1at 3534.513 kb on + strand, within Xcc-8004.3656.1at 3534.513 kb on + strand, within Xcc-8004.3656.1at 3534.514 kb on - strand, within Xcc-8004.3656.1at 3534.514 kb on - strand, within Xcc-8004.3656.1at 3534.514 kb on - strand, within Xcc-8004.3656.1at 3534.514 kb on - strand, within Xcc-8004.3656.1at 3534.843 kb on + strand, within Xcc-8004.3656.1at 3534.843 kb on + strand, within Xcc-8004.3656.1at 3534.843 kb on + strand, within Xcc-8004.3656.1at 3534.843 kb on + strand, within Xcc-8004.3656.1at 3534.843 kb on + strand, within Xcc-8004.3656.1at 3534.843 kb on + strand, within Xcc-8004.3656.1at 3534.843 kb on + strand, within Xcc-8004.3656.1at 3534.843 kb on + strand, within Xcc-8004.3656.1at 3534.843 kb on + strand, within Xcc-8004.3656.1at 3534.843 kb on + strand, within Xcc-8004.3656.1at 3534.843 kb on + strand, within Xcc-8004.3656.1at 3534.844 kb on - strand, within Xcc-8004.3656.1at 3534.844 kb on - strand, within Xcc-8004.3656.1at 3534.844 kb on - strand, within Xcc-8004.3656.1at 3534.844 kb on - strand, within Xcc-8004.3656.1at 3534.844 kb on - strand, within Xcc-8004.3656.1at 3534.844 kb on - strand, within Xcc-8004.3656.1at 3534.844 kb on - strand, within Xcc-8004.3656.1at 3534.844 kb on - strand, within Xcc-8004.3656.1at 3534.844 kb on - strand, within Xcc-8004.3656.1at 3534.844 kb on - strand, within Xcc-8004.3656.1at 3534.844 kb on - strand, within Xcc-8004.3656.1at 3534.844 kb on - strand, within Xcc-8004.3656.1at 3535.242 kb on + strand, within Xcc-8004.3656.1at 3535.242 kb on + strand, within Xcc-8004.3656.1at 3535.243 kb on - strand, within Xcc-8004.3656.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,533,096 + -1.8
3,533,096 + +0.5
3,533,096 + -2.8
3,533,097 - +0.9
3,533,119 + -2.4
3,533,198 + Xcc-8004.3654.1 0.16 -0.3
3,533,199 - Xcc-8004.3654.1 0.16 +1.5
3,533,255 + Xcc-8004.3654.1 0.21 +1.4
3,533,255 + Xcc-8004.3654.1 0.21 +1.2
3,533,255 + Xcc-8004.3654.1 0.21 +0.7
3,533,256 - Xcc-8004.3654.1 0.21 -0.2
3,533,390 + Xcc-8004.3654.1 0.35 -0.8
3,533,390 + Xcc-8004.3654.1 0.35 +0.2
3,533,391 - Xcc-8004.3654.1 0.35 -0.7
3,533,480 + Xcc-8004.3654.1 0.44 +0.2
3,533,480 + Xcc-8004.3654.1 0.44 +0.4
3,533,567 + Xcc-8004.3654.1 0.52 +0.7
3,533,567 + Xcc-8004.3654.1 0.52 -2.5
3,533,567 + Xcc-8004.3654.1 0.52 -0.3
3,533,568 - Xcc-8004.3654.1 0.52 -1.0
3,533,568 - Xcc-8004.3654.1 0.52 -0.2
3,533,568 - Xcc-8004.3654.1 0.52 -2.2
3,533,573 + Xcc-8004.3654.1 0.53 -2.2
3,533,573 + Xcc-8004.3654.1 0.53 -1.1
3,533,573 + Xcc-8004.3654.1 0.53 -1.4
3,533,573 + Xcc-8004.3654.1 0.53 -1.0
3,533,573 + Xcc-8004.3654.1 0.53 +0.1
3,533,574 - Xcc-8004.3654.1 0.53 -0.2
3,533,574 - Xcc-8004.3654.1 0.53 +0.5
3,533,574 - Xcc-8004.3654.1 0.53 +0.0
3,533,574 - Xcc-8004.3654.1 0.53 +4.3
3,533,574 - Xcc-8004.3654.1 0.53 +0.6
3,533,739 - Xcc-8004.3654.1 0.69 -1.5
3,533,867 + Xcc-8004.3654.1 0.82 -1.5
3,533,867 + Xcc-8004.3654.1 0.82 -0.5
3,533,867 + Xcc-8004.3654.1 0.82 -1.5
3,533,867 + Xcc-8004.3654.1 0.82 +0.7
3,533,867 + Xcc-8004.3654.1 0.82 -0.7
3,533,868 - Xcc-8004.3654.1 0.82 -1.7
3,533,868 - Xcc-8004.3654.1 0.82 -1.0
3,533,868 - Xcc-8004.3654.1 0.82 +3.7
3,533,868 - Xcc-8004.3654.1 0.82 +1.5
3,534,070 + Xcc-8004.3655.1 0.10 -0.8
3,534,070 + Xcc-8004.3655.1 0.10 +1.2
3,534,297 + +0.0
3,534,297 + +1.2
3,534,354 + -0.9
3,534,354 + -0.2
3,534,355 - -1.7
3,534,396 + +0.6
3,534,396 + -1.9
3,534,396 + -0.8
3,534,396 + -2.2
3,534,396 + +0.0
3,534,396 + +0.2
3,534,396 + +0.3
3,534,396 + +0.3
3,534,396 + +0.5
3,534,397 - +1.0
3,534,397 - -0.3
3,534,397 - -0.1
3,534,397 - -0.0
3,534,397 - -0.5
3,534,397 - +1.4
3,534,513 + Xcc-8004.3656.1 0.15 +0.9
3,534,513 + Xcc-8004.3656.1 0.15 -1.3
3,534,513 + Xcc-8004.3656.1 0.15 -3.0
3,534,513 + Xcc-8004.3656.1 0.15 +0.0
3,534,514 - Xcc-8004.3656.1 0.15 -2.2
3,534,514 - Xcc-8004.3656.1 0.15 -0.3
3,534,514 - Xcc-8004.3656.1 0.15 +0.8
3,534,514 - Xcc-8004.3656.1 0.15 -0.1
3,534,843 + Xcc-8004.3656.1 0.35 +0.3
3,534,843 + Xcc-8004.3656.1 0.35 +1.1
3,534,843 + Xcc-8004.3656.1 0.35 +1.0
3,534,843 + Xcc-8004.3656.1 0.35 +1.0
3,534,843 + Xcc-8004.3656.1 0.35 +1.1
3,534,843 + Xcc-8004.3656.1 0.35 +3.1
3,534,843 + Xcc-8004.3656.1 0.35 -1.0
3,534,843 + Xcc-8004.3656.1 0.35 +0.4
3,534,843 + Xcc-8004.3656.1 0.35 +0.2
3,534,843 + Xcc-8004.3656.1 0.35 -1.4
3,534,843 + Xcc-8004.3656.1 0.35 -1.5
3,534,844 - Xcc-8004.3656.1 0.35 -1.0
3,534,844 - Xcc-8004.3656.1 0.35 -1.3
3,534,844 - Xcc-8004.3656.1 0.35 -2.8
3,534,844 - Xcc-8004.3656.1 0.35 +1.5
3,534,844 - Xcc-8004.3656.1 0.35 -1.4
3,534,844 - Xcc-8004.3656.1 0.35 +0.2
3,534,844 - Xcc-8004.3656.1 0.35 -0.1
3,534,844 - Xcc-8004.3656.1 0.35 +0.4
3,534,844 - Xcc-8004.3656.1 0.35 -1.4
3,534,844 - Xcc-8004.3656.1 0.35 +0.6
3,534,844 - Xcc-8004.3656.1 0.35 +1.0
3,534,844 - Xcc-8004.3656.1 0.35 -0.8
3,535,242 + Xcc-8004.3656.1 0.60 -0.4
3,535,242 + Xcc-8004.3656.1 0.60 -1.2
3,535,243 - Xcc-8004.3656.1 0.60 +1.1

Or see this region's nucleotide sequence