Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3576.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3574.1 and Xcc-8004.3575.1 are separated by 26 nucleotidesXcc-8004.3575.1 and Xcc-8004.3576.1 are separated by 154 nucleotidesXcc-8004.3576.1 and Xcc-8004.3579.1 are separated by 532 nucleotides Xcc-8004.3574.1: Xcc-8004.3574.1 - Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-), at 3,466,364 to 3,466,810 Xcc-8004.3574.1 Xcc-8004.3575.1: Xcc-8004.3575.1 - FIG01211822: hypothetical protein, at 3,466,837 to 3,467,484 Xcc-8004.3575.1 Xcc-8004.3576.1: Xcc-8004.3576.1 - Intracellular PHB depolymerase (EC 3.1.1.-), at 3,467,639 to 3,468,946 Xcc-8004.3576.1 Xcc-8004.3579.1: Xcc-8004.3579.1 - sensor protein, at 3,469,479 to 3,470,390 Xcc-8004.3579.1 Position (kb) 3467 3468 3469Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3466.833 kb on + strandat 3466.834 kb on - strandat 3466.834 kb on - strandat 3466.856 kb on - strandat 3466.906 kb on + strand, within Xcc-8004.3575.1at 3466.906 kb on + strand, within Xcc-8004.3575.1at 3466.906 kb on + strand, within Xcc-8004.3575.1at 3466.906 kb on + strand, within Xcc-8004.3575.1at 3466.907 kb on - strand, within Xcc-8004.3575.1at 3466.918 kb on + strand, within Xcc-8004.3575.1at 3466.918 kb on + strand, within Xcc-8004.3575.1at 3466.918 kb on + strand, within Xcc-8004.3575.1at 3466.918 kb on + strand, within Xcc-8004.3575.1at 3466.919 kb on - strand, within Xcc-8004.3575.1at 3466.919 kb on - strand, within Xcc-8004.3575.1at 3466.919 kb on - strand, within Xcc-8004.3575.1at 3466.919 kb on - strand, within Xcc-8004.3575.1at 3466.919 kb on - strand, within Xcc-8004.3575.1at 3466.919 kb on - strand, within Xcc-8004.3575.1at 3466.919 kb on - strand, within Xcc-8004.3575.1at 3466.933 kb on + strand, within Xcc-8004.3575.1at 3466.934 kb on - strand, within Xcc-8004.3575.1at 3467.005 kb on + strand, within Xcc-8004.3575.1at 3467.005 kb on + strand, within Xcc-8004.3575.1at 3467.005 kb on + strand, within Xcc-8004.3575.1at 3467.005 kb on + strand, within Xcc-8004.3575.1at 3467.005 kb on + strand, within Xcc-8004.3575.1at 3467.006 kb on - strand, within Xcc-8004.3575.1at 3467.006 kb on - strand, within Xcc-8004.3575.1at 3467.006 kb on - strand, within Xcc-8004.3575.1at 3467.006 kb on - strand, within Xcc-8004.3575.1at 3467.008 kb on + strand, within Xcc-8004.3575.1at 3467.008 kb on + strand, within Xcc-8004.3575.1at 3467.008 kb on + strand, within Xcc-8004.3575.1at 3467.008 kb on + strand, within Xcc-8004.3575.1at 3467.008 kb on + strand, within Xcc-8004.3575.1at 3467.008 kb on + strand, within Xcc-8004.3575.1at 3467.009 kb on - strand, within Xcc-8004.3575.1at 3467.009 kb on - strand, within Xcc-8004.3575.1at 3467.009 kb on - strand, within Xcc-8004.3575.1at 3467.009 kb on - strand, within Xcc-8004.3575.1at 3467.009 kb on - strand, within Xcc-8004.3575.1at 3467.101 kb on + strand, within Xcc-8004.3575.1at 3467.101 kb on + strand, within Xcc-8004.3575.1at 3467.102 kb on - strand, within Xcc-8004.3575.1at 3467.242 kb on + strand, within Xcc-8004.3575.1at 3467.242 kb on + strand, within Xcc-8004.3575.1at 3467.242 kb on + strand, within Xcc-8004.3575.1at 3467.242 kb on + strand, within Xcc-8004.3575.1at 3467.242 kb on + strand, within Xcc-8004.3575.1at 3467.243 kb on - strand, within Xcc-8004.3575.1at 3467.243 kb on - strand, within Xcc-8004.3575.1at 3467.243 kb on - strand, within Xcc-8004.3575.1at 3467.243 kb on - strand, within Xcc-8004.3575.1at 3467.243 kb on - strand, within Xcc-8004.3575.1at 3467.243 kb on - strand, within Xcc-8004.3575.1at 3467.243 kb on - strand, within Xcc-8004.3575.1at 3467.575 kb on + strandat 3467.576 kb on - strandat 3467.646 kb on - strandat 3467.646 kb on - strandat 3468.053 kb on + strand, within Xcc-8004.3576.1at 3468.054 kb on - strand, within Xcc-8004.3576.1at 3468.054 kb on - strand, within Xcc-8004.3576.1at 3468.054 kb on - strand, within Xcc-8004.3576.1at 3468.069 kb on + strand, within Xcc-8004.3576.1at 3468.119 kb on + strand, within Xcc-8004.3576.1at 3468.119 kb on + strand, within Xcc-8004.3576.1at 3468.119 kb on + strand, within Xcc-8004.3576.1at 3468.119 kb on + strand, within Xcc-8004.3576.1at 3468.119 kb on + strand, within Xcc-8004.3576.1at 3468.120 kb on - strand, within Xcc-8004.3576.1at 3468.120 kb on - strand, within Xcc-8004.3576.1at 3468.120 kb on - strand, within Xcc-8004.3576.1at 3468.128 kb on + strand, within Xcc-8004.3576.1at 3468.128 kb on + strand, within Xcc-8004.3576.1at 3468.128 kb on + strand, within Xcc-8004.3576.1at 3468.129 kb on - strand, within Xcc-8004.3576.1at 3468.174 kb on + strand, within Xcc-8004.3576.1at 3468.174 kb on + strand, within Xcc-8004.3576.1at 3468.175 kb on - strand, within Xcc-8004.3576.1at 3468.175 kb on - strand, within Xcc-8004.3576.1at 3468.175 kb on - strand, within Xcc-8004.3576.1at 3468.175 kb on - strand, within Xcc-8004.3576.1at 3468.401 kb on + strand, within Xcc-8004.3576.1at 3468.402 kb on - strand, within Xcc-8004.3576.1at 3468.402 kb on - strand, within Xcc-8004.3576.1at 3468.402 kb on - strand, within Xcc-8004.3576.1at 3468.476 kb on + strand, within Xcc-8004.3576.1at 3468.530 kb on + strand, within Xcc-8004.3576.1at 3468.530 kb on + strand, within Xcc-8004.3576.1at 3468.530 kb on + strand, within Xcc-8004.3576.1at 3468.531 kb on - strand, within Xcc-8004.3576.1at 3468.531 kb on - strand, within Xcc-8004.3576.1at 3468.531 kb on - strand, within Xcc-8004.3576.1at 3468.539 kb on + strand, within Xcc-8004.3576.1at 3468.539 kb on + strand, within Xcc-8004.3576.1at 3468.539 kb on + strand, within Xcc-8004.3576.1at 3468.540 kb on - strand, within Xcc-8004.3576.1at 3468.569 kb on + strand, within Xcc-8004.3576.1at 3468.569 kb on + strand, within Xcc-8004.3576.1at 3468.570 kb on - strand, within Xcc-8004.3576.1at 3468.572 kb on + strand, within Xcc-8004.3576.1at 3468.572 kb on + strand, within Xcc-8004.3576.1at 3468.572 kb on + strand, within Xcc-8004.3576.1at 3468.572 kb on + strand, within Xcc-8004.3576.1at 3468.573 kb on - strand, within Xcc-8004.3576.1at 3468.573 kb on - strand, within Xcc-8004.3576.1at 3468.573 kb on - strand, within Xcc-8004.3576.1at 3468.685 kb on + strand, within Xcc-8004.3576.1at 3468.842 kb on + strandat 3468.843 kb on - strandat 3468.863 kb on - strandat 3468.992 kb on + strandat 3468.992 kb on + strandat 3469.025 kb on + strandat 3469.025 kb on + strandat 3469.026 kb on - strandat 3469.026 kb on - strandat 3469.026 kb on - strandat 3469.026 kb on - strandat 3469.026 kb on - strandat 3469.026 kb on - strandat 3469.026 kb on - strandat 3469.026 kb on - strandat 3469.117 kb on + strandat 3469.117 kb on + strandat 3469.118 kb on - strandat 3469.118 kb on - strandat 3469.138 kb on - strandat 3469.138 kb on - strandat 3469.228 kb on - strandat 3469.228 kb on - strandat 3469.228 kb on - strandat 3469.228 kb on - strandat 3469.228 kb on - strandat 3469.228 kb on - strandat 3469.284 kb on + strandat 3469.284 kb on + strandat 3469.293 kb on + strandat 3469.293 kb on + strandat 3469.293 kb on + strandat 3469.321 kb on + strandat 3469.321 kb on + strandat 3469.321 kb on + strandat 3469.321 kb on + strandat 3469.321 kb on + strandat 3469.322 kb on - strandat 3469.322 kb on - strandat 3469.322 kb on - strandat 3469.322 kb on - strandat 3469.618 kb on + strand, within Xcc-8004.3579.1at 3469.618 kb on + strand, within Xcc-8004.3579.1at 3469.619 kb on - strand, within Xcc-8004.3579.1at 3469.619 kb on - strand, within Xcc-8004.3579.1at 3469.619 kb on - strand, within Xcc-8004.3579.1at 3469.619 kb on - strand, within Xcc-8004.3579.1at 3469.726 kb on + strand, within Xcc-8004.3579.1at 3469.726 kb on + strand, within Xcc-8004.3579.1at 3469.727 kb on - strand, within Xcc-8004.3579.1at 3469.759 kb on + strand, within Xcc-8004.3579.1at 3469.760 kb on - strand, within Xcc-8004.3579.1at 3469.760 kb on - strand, within Xcc-8004.3579.1at 3469.760 kb on - strand, within Xcc-8004.3579.1at 3469.760 kb on - strand, within Xcc-8004.3579.1at 3469.760 kb on - strand, within Xcc-8004.3579.1at 3469.760 kb on - strand, within Xcc-8004.3579.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,466,833 + +0.2
3,466,834 - +2.2
3,466,834 - +1.9
3,466,856 - -0.3
3,466,906 + Xcc-8004.3575.1 0.11 -1.0
3,466,906 + Xcc-8004.3575.1 0.11 -0.1
3,466,906 + Xcc-8004.3575.1 0.11 -2.3
3,466,906 + Xcc-8004.3575.1 0.11 -0.6
3,466,907 - Xcc-8004.3575.1 0.11 -0.6
3,466,918 + Xcc-8004.3575.1 0.12 +2.1
3,466,918 + Xcc-8004.3575.1 0.12 -0.9
3,466,918 + Xcc-8004.3575.1 0.12 -2.1
3,466,918 + Xcc-8004.3575.1 0.12 -0.3
3,466,919 - Xcc-8004.3575.1 0.13 -1.9
3,466,919 - Xcc-8004.3575.1 0.13 +1.8
3,466,919 - Xcc-8004.3575.1 0.13 +0.2
3,466,919 - Xcc-8004.3575.1 0.13 -0.5
3,466,919 - Xcc-8004.3575.1 0.13 +0.4
3,466,919 - Xcc-8004.3575.1 0.13 -0.2
3,466,919 - Xcc-8004.3575.1 0.13 +0.4
3,466,933 + Xcc-8004.3575.1 0.15 -0.6
3,466,934 - Xcc-8004.3575.1 0.15 +0.9
3,467,005 + Xcc-8004.3575.1 0.26 -1.4
3,467,005 + Xcc-8004.3575.1 0.26 -0.2
3,467,005 + Xcc-8004.3575.1 0.26 -0.9
3,467,005 + Xcc-8004.3575.1 0.26 -0.2
3,467,005 + Xcc-8004.3575.1 0.26 +1.4
3,467,006 - Xcc-8004.3575.1 0.26 +0.7
3,467,006 - Xcc-8004.3575.1 0.26 -0.7
3,467,006 - Xcc-8004.3575.1 0.26 -0.3
3,467,006 - Xcc-8004.3575.1 0.26 -2.4
3,467,008 + Xcc-8004.3575.1 0.26 -0.3
3,467,008 + Xcc-8004.3575.1 0.26 +0.3
3,467,008 + Xcc-8004.3575.1 0.26 +0.7
3,467,008 + Xcc-8004.3575.1 0.26 -0.0
3,467,008 + Xcc-8004.3575.1 0.26 -1.2
3,467,008 + Xcc-8004.3575.1 0.26 -1.8
3,467,009 - Xcc-8004.3575.1 0.27 -0.3
3,467,009 - Xcc-8004.3575.1 0.27 +0.2
3,467,009 - Xcc-8004.3575.1 0.27 -0.5
3,467,009 - Xcc-8004.3575.1 0.27 +1.4
3,467,009 - Xcc-8004.3575.1 0.27 -1.7
3,467,101 + Xcc-8004.3575.1 0.41 -0.6
3,467,101 + Xcc-8004.3575.1 0.41 +0.5
3,467,102 - Xcc-8004.3575.1 0.41 -1.2
3,467,242 + Xcc-8004.3575.1 0.62 +0.5
3,467,242 + Xcc-8004.3575.1 0.62 -0.0
3,467,242 + Xcc-8004.3575.1 0.62 -1.4
3,467,242 + Xcc-8004.3575.1 0.62 +1.3
3,467,242 + Xcc-8004.3575.1 0.62 -0.0
3,467,243 - Xcc-8004.3575.1 0.63 -0.8
3,467,243 - Xcc-8004.3575.1 0.63 -0.5
3,467,243 - Xcc-8004.3575.1 0.63 +2.3
3,467,243 - Xcc-8004.3575.1 0.63 +1.8
3,467,243 - Xcc-8004.3575.1 0.63 +0.9
3,467,243 - Xcc-8004.3575.1 0.63 +1.1
3,467,243 - Xcc-8004.3575.1 0.63 +0.9
3,467,575 + +0.4
3,467,576 - -1.6
3,467,646 - -1.7
3,467,646 - -0.5
3,468,053 + Xcc-8004.3576.1 0.32 +1.5
3,468,054 - Xcc-8004.3576.1 0.32 -1.5
3,468,054 - Xcc-8004.3576.1 0.32 -1.2
3,468,054 - Xcc-8004.3576.1 0.32 -0.7
3,468,069 + Xcc-8004.3576.1 0.33 -2.8
3,468,119 + Xcc-8004.3576.1 0.37 +0.5
3,468,119 + Xcc-8004.3576.1 0.37 -0.1
3,468,119 + Xcc-8004.3576.1 0.37 +1.0
3,468,119 + Xcc-8004.3576.1 0.37 -0.7
3,468,119 + Xcc-8004.3576.1 0.37 -0.5
3,468,120 - Xcc-8004.3576.1 0.37 -1.0
3,468,120 - Xcc-8004.3576.1 0.37 +0.5
3,468,120 - Xcc-8004.3576.1 0.37 +0.5
3,468,128 + Xcc-8004.3576.1 0.37 -0.3
3,468,128 + Xcc-8004.3576.1 0.37 -1.8
3,468,128 + Xcc-8004.3576.1 0.37 -0.8
3,468,129 - Xcc-8004.3576.1 0.37 -0.8
3,468,174 + Xcc-8004.3576.1 0.41 -2.2
3,468,174 + Xcc-8004.3576.1 0.41 +2.1
3,468,175 - Xcc-8004.3576.1 0.41 +0.6
3,468,175 - Xcc-8004.3576.1 0.41 +1.1
3,468,175 - Xcc-8004.3576.1 0.41 -1.2
3,468,175 - Xcc-8004.3576.1 0.41 -0.7
3,468,401 + Xcc-8004.3576.1 0.58 -2.5
3,468,402 - Xcc-8004.3576.1 0.58 -0.5
3,468,402 - Xcc-8004.3576.1 0.58 -0.6
3,468,402 - Xcc-8004.3576.1 0.58 +0.9
3,468,476 + Xcc-8004.3576.1 0.64 -0.0
3,468,530 + Xcc-8004.3576.1 0.68 -1.3
3,468,530 + Xcc-8004.3576.1 0.68 +0.0
3,468,530 + Xcc-8004.3576.1 0.68 +0.4
3,468,531 - Xcc-8004.3576.1 0.68 -2.5
3,468,531 - Xcc-8004.3576.1 0.68 -0.3
3,468,531 - Xcc-8004.3576.1 0.68 -0.1
3,468,539 + Xcc-8004.3576.1 0.69 +1.1
3,468,539 + Xcc-8004.3576.1 0.69 -0.3
3,468,539 + Xcc-8004.3576.1 0.69 -2.1
3,468,540 - Xcc-8004.3576.1 0.69 -0.4
3,468,569 + Xcc-8004.3576.1 0.71 -0.5
3,468,569 + Xcc-8004.3576.1 0.71 -1.5
3,468,570 - Xcc-8004.3576.1 0.71 -0.3
3,468,572 + Xcc-8004.3576.1 0.71 -1.7
3,468,572 + Xcc-8004.3576.1 0.71 -3.2
3,468,572 + Xcc-8004.3576.1 0.71 -1.2
3,468,572 + Xcc-8004.3576.1 0.71 -2.1
3,468,573 - Xcc-8004.3576.1 0.71 -1.5
3,468,573 - Xcc-8004.3576.1 0.71 +1.9
3,468,573 - Xcc-8004.3576.1 0.71 -0.5
3,468,685 + Xcc-8004.3576.1 0.80 +2.5
3,468,842 + -1.3
3,468,843 - +0.3
3,468,863 - -1.0
3,468,992 + -1.5
3,468,992 + +0.3
3,469,025 + +1.4
3,469,025 + -3.0
3,469,026 - -0.9
3,469,026 - +0.9
3,469,026 - -0.5
3,469,026 - -1.0
3,469,026 - +2.5
3,469,026 - -0.7
3,469,026 - -0.9
3,469,026 - +2.0
3,469,117 + +0.8
3,469,117 + +1.8
3,469,118 - -0.3
3,469,118 - +3.2
3,469,138 - +0.6
3,469,138 - +1.2
3,469,228 - -2.2
3,469,228 - +1.4
3,469,228 - +0.2
3,469,228 - -1.3
3,469,228 - +1.7
3,469,228 - +1.5
3,469,284 + -0.3
3,469,284 + +0.2
3,469,293 + +0.3
3,469,293 + -0.5
3,469,293 + +0.5
3,469,321 + -1.2
3,469,321 + -1.3
3,469,321 + +0.6
3,469,321 + -0.9
3,469,321 + +1.3
3,469,322 - +0.3
3,469,322 - -1.2
3,469,322 - -1.4
3,469,322 - -0.5
3,469,618 + Xcc-8004.3579.1 0.15 -1.3
3,469,618 + Xcc-8004.3579.1 0.15 -1.3
3,469,619 - Xcc-8004.3579.1 0.15 +0.1
3,469,619 - Xcc-8004.3579.1 0.15 -0.7
3,469,619 - Xcc-8004.3579.1 0.15 +1.3
3,469,619 - Xcc-8004.3579.1 0.15 -0.3
3,469,726 + Xcc-8004.3579.1 0.27 -0.6
3,469,726 + Xcc-8004.3579.1 0.27 +0.9
3,469,727 - Xcc-8004.3579.1 0.27 +1.9
3,469,759 + Xcc-8004.3579.1 0.31 +0.4
3,469,760 - Xcc-8004.3579.1 0.31 -2.5
3,469,760 - Xcc-8004.3579.1 0.31 +0.8
3,469,760 - Xcc-8004.3579.1 0.31 +0.2
3,469,760 - Xcc-8004.3579.1 0.31 -0.5
3,469,760 - Xcc-8004.3579.1 0.31 -1.1
3,469,760 - Xcc-8004.3579.1 0.31 -1.0

Or see this region's nucleotide sequence