Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.350.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.349.1 and Xcc-8004.350.1 are separated by 88 nucleotidesXcc-8004.350.1 and Xcc-8004.351.1 are separated by 402 nucleotides Xcc-8004.349.1: Xcc-8004.349.1 - FIG01210302: hypothetical protein, at 334,885 to 335,739 Xcc-8004.349.1 Xcc-8004.350.1: Xcc-8004.350.1 - hypothetical protein, at 335,828 to 335,980 Xcc-8004.350.1 Xcc-8004.351.1: Xcc-8004.351.1 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 336,383 to 336,946 Xcc-8004.351.1 Position (kb) 335 336Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 334.848 kb on + strandat 334.848 kb on + strandat 334.849 kb on - strandat 334.849 kb on - strandat 334.859 kb on + strandat 334.919 kb on + strandat 334.919 kb on + strandat 334.919 kb on + strandat 334.919 kb on + strandat 334.920 kb on - strandat 334.920 kb on - strandat 334.920 kb on - strandat 334.920 kb on - strandat 335.016 kb on + strand, within Xcc-8004.349.1at 335.044 kb on + strand, within Xcc-8004.349.1at 335.044 kb on + strand, within Xcc-8004.349.1at 335.044 kb on + strand, within Xcc-8004.349.1at 335.063 kb on - strand, within Xcc-8004.349.1at 335.167 kb on + strand, within Xcc-8004.349.1at 335.167 kb on + strand, within Xcc-8004.349.1at 335.168 kb on - strand, within Xcc-8004.349.1at 335.188 kb on + strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.299 kb on + strand, within Xcc-8004.349.1at 335.299 kb on + strand, within Xcc-8004.349.1at 335.299 kb on + strand, within Xcc-8004.349.1at 335.299 kb on + strand, within Xcc-8004.349.1at 335.300 kb on - strand, within Xcc-8004.349.1at 335.300 kb on - strand, within Xcc-8004.349.1at 335.300 kb on - strand, within Xcc-8004.349.1at 335.300 kb on - strand, within Xcc-8004.349.1at 335.323 kb on + strand, within Xcc-8004.349.1at 335.323 kb on + strand, within Xcc-8004.349.1at 335.323 kb on + strand, within Xcc-8004.349.1at 335.324 kb on - strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.441 kb on - strand, within Xcc-8004.349.1at 335.441 kb on - strand, within Xcc-8004.349.1at 335.524 kb on + strand, within Xcc-8004.349.1at 335.525 kb on - strand, within Xcc-8004.349.1at 335.525 kb on - strand, within Xcc-8004.349.1at 335.687 kb on - strandat 335.808 kb on + strandat 335.808 kb on + strandat 335.809 kb on - strandat 335.896 kb on - strand, within Xcc-8004.350.1at 335.924 kb on - strand, within Xcc-8004.350.1at 335.924 kb on - strand, within Xcc-8004.350.1at 335.924 kb on - strand, within Xcc-8004.350.1at 335.964 kb on + strand, within Xcc-8004.350.1at 336.014 kb on - strandat 336.041 kb on + strandat 336.041 kb on + strandat 336.041 kb on + strandat 336.050 kb on + strandat 336.050 kb on + strandat 336.050 kb on + strandat 336.050 kb on + strandat 336.051 kb on - strandat 336.051 kb on - strandat 336.051 kb on - strandat 336.051 kb on - strandat 336.054 kb on + strandat 336.054 kb on + strandat 336.054 kb on + strandat 336.055 kb on - strandat 336.094 kb on + strandat 336.101 kb on + strandat 336.102 kb on - strandat 336.102 kb on - strandat 336.102 kb on - strandat 336.102 kb on - strandat 336.102 kb on - strandat 336.102 kb on - strandat 336.107 kb on + strandat 336.107 kb on + strandat 336.108 kb on - strandat 336.108 kb on - strandat 336.108 kb on - strandat 336.108 kb on - strandat 336.108 kb on - strandat 336.108 kb on - strandat 336.244 kb on + strandat 336.245 kb on - strandat 336.407 kb on + strandat 336.489 kb on - strand, within Xcc-8004.351.1at 336.489 kb on - strand, within Xcc-8004.351.1at 336.489 kb on - strand, within Xcc-8004.351.1at 336.489 kb on - strand, within Xcc-8004.351.1at 336.489 kb on - strand, within Xcc-8004.351.1at 336.596 kb on + strand, within Xcc-8004.351.1at 336.596 kb on + strand, within Xcc-8004.351.1at 336.596 kb on + strand, within Xcc-8004.351.1at 336.596 kb on + strand, within Xcc-8004.351.1at 336.597 kb on - strand, within Xcc-8004.351.1at 336.597 kb on - strand, within Xcc-8004.351.1at 336.597 kb on - strand, within Xcc-8004.351.1at 336.625 kb on + strand, within Xcc-8004.351.1at 336.693 kb on + strand, within Xcc-8004.351.1at 336.693 kb on + strand, within Xcc-8004.351.1at 336.693 kb on + strand, within Xcc-8004.351.1at 336.693 kb on + strand, within Xcc-8004.351.1at 336.693 kb on + strand, within Xcc-8004.351.1at 336.694 kb on - strand, within Xcc-8004.351.1at 336.694 kb on - strand, within Xcc-8004.351.1at 336.891 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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334,848 + -1.3
334,848 + +0.2
334,849 - +0.6
334,849 - +1.0
334,859 + +1.9
334,919 + -1.4
334,919 + -0.5
334,919 + +1.9
334,919 + +1.9
334,920 - +0.8
334,920 - +1.1
334,920 - -3.8
334,920 - -2.2
335,016 + Xcc-8004.349.1 0.15 +0.3
335,044 + Xcc-8004.349.1 0.19 -0.6
335,044 + Xcc-8004.349.1 0.19 -0.0
335,044 + Xcc-8004.349.1 0.19 +0.8
335,063 - Xcc-8004.349.1 0.21 +1.8
335,167 + Xcc-8004.349.1 0.33 -1.4
335,167 + Xcc-8004.349.1 0.33 +0.6
335,168 - Xcc-8004.349.1 0.33 +0.1
335,188 + Xcc-8004.349.1 0.35 -0.1
335,189 - Xcc-8004.349.1 0.36 +0.6
335,189 - Xcc-8004.349.1 0.36 -0.5
335,189 - Xcc-8004.349.1 0.36 +0.1
335,189 - Xcc-8004.349.1 0.36 +0.4
335,189 - Xcc-8004.349.1 0.36 +0.9
335,189 - Xcc-8004.349.1 0.36 -1.3
335,189 - Xcc-8004.349.1 0.36 -0.4
335,189 - Xcc-8004.349.1 0.36 +0.6
335,189 - Xcc-8004.349.1 0.36 +2.2
335,189 - Xcc-8004.349.1 0.36 -0.3
335,299 + Xcc-8004.349.1 0.48 +1.5
335,299 + Xcc-8004.349.1 0.48 -0.9
335,299 + Xcc-8004.349.1 0.48 -1.7
335,299 + Xcc-8004.349.1 0.48 +0.6
335,300 - Xcc-8004.349.1 0.49 -0.4
335,300 - Xcc-8004.349.1 0.49 +0.7
335,300 - Xcc-8004.349.1 0.49 +1.5
335,300 - Xcc-8004.349.1 0.49 -0.6
335,323 + Xcc-8004.349.1 0.51 -1.1
335,323 + Xcc-8004.349.1 0.51 -1.5
335,323 + Xcc-8004.349.1 0.51 -0.1
335,324 - Xcc-8004.349.1 0.51 +0.2
335,440 + Xcc-8004.349.1 0.65 +1.7
335,440 + Xcc-8004.349.1 0.65 +1.3
335,440 + Xcc-8004.349.1 0.65 +0.0
335,440 + Xcc-8004.349.1 0.65 -0.6
335,440 + Xcc-8004.349.1 0.65 +1.1
335,440 + Xcc-8004.349.1 0.65 +0.2
335,440 + Xcc-8004.349.1 0.65 -2.2
335,440 + Xcc-8004.349.1 0.65 +0.0
335,441 - Xcc-8004.349.1 0.65 -0.2
335,441 - Xcc-8004.349.1 0.65 +0.2
335,524 + Xcc-8004.349.1 0.75 -1.0
335,525 - Xcc-8004.349.1 0.75 -3.0
335,525 - Xcc-8004.349.1 0.75 +0.0
335,687 - -1.6
335,808 + -2.1
335,808 + -0.4
335,809 - -1.5
335,896 - Xcc-8004.350.1 0.44 +0.3
335,924 - Xcc-8004.350.1 0.63 -2.0
335,924 - Xcc-8004.350.1 0.63 +0.9
335,924 - Xcc-8004.350.1 0.63 +1.0
335,964 + Xcc-8004.350.1 0.89 +2.5
336,014 - -0.1
336,041 + -0.8
336,041 + +1.0
336,041 + +0.2
336,050 + -0.5
336,050 + +1.7
336,050 + +0.4
336,050 + -1.4
336,051 - -0.4
336,051 - +0.5
336,051 - -1.0
336,051 - +0.1
336,054 + -0.4
336,054 + -0.6
336,054 + +0.5
336,055 - +1.7
336,094 + +1.8
336,101 + +0.1
336,102 - -0.6
336,102 - -0.3
336,102 - +0.6
336,102 - +1.3
336,102 - -1.8
336,102 - -0.1
336,107 + +1.3
336,107 + -0.4
336,108 - +0.4
336,108 - -0.8
336,108 - +0.5
336,108 - -0.9
336,108 - -0.3
336,108 - -2.2
336,244 + -1.0
336,245 - +1.0
336,407 + -2.5
336,489 - Xcc-8004.351.1 0.19 -1.1
336,489 - Xcc-8004.351.1 0.19 +0.6
336,489 - Xcc-8004.351.1 0.19 -0.2
336,489 - Xcc-8004.351.1 0.19 -0.1
336,489 - Xcc-8004.351.1 0.19 +0.8
336,596 + Xcc-8004.351.1 0.38 -0.1
336,596 + Xcc-8004.351.1 0.38 -0.8
336,596 + Xcc-8004.351.1 0.38 -1.6
336,596 + Xcc-8004.351.1 0.38 +0.3
336,597 - Xcc-8004.351.1 0.38 +0.2
336,597 - Xcc-8004.351.1 0.38 -0.4
336,597 - Xcc-8004.351.1 0.38 -2.0
336,625 + Xcc-8004.351.1 0.43 -0.4
336,693 + Xcc-8004.351.1 0.55 +0.7
336,693 + Xcc-8004.351.1 0.55 +1.5
336,693 + Xcc-8004.351.1 0.55 -0.8
336,693 + Xcc-8004.351.1 0.55 -0.8
336,693 + Xcc-8004.351.1 0.55 -0.0
336,694 - Xcc-8004.351.1 0.55 +1.3
336,694 - Xcc-8004.351.1 0.55 -1.7
336,891 + +0.3

Or see this region's nucleotide sequence