Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3413.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3412.1 and Xcc-8004.3413.1 are separated by 42 nucleotidesXcc-8004.3413.1 and Xcc-8004.3414.1 are separated by 146 nucleotides Xcc-8004.3412.1: Xcc-8004.3412.1 - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2), at 3,300,706 to 3,303,609 Xcc-8004.3412.1 Xcc-8004.3413.1: Xcc-8004.3413.1 - Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61), at 3,303,652 to 3,304,866 Xcc-8004.3413.1 Xcc-8004.3414.1: Xcc-8004.3414.1 - Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4), at 3,305,013 to 3,306,449 Xcc-8004.3414.1 Position (kb) 3303 3304 3305Strain fitness (log2 ratio) -2 -1 0 1at 3304.864 kb on + strandat 3304.864 kb on + strandat 3304.864 kb on + strandat 3304.986 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,304,864 + +0.7
3,304,864 + -1.2
3,304,864 + -0.4
3,304,986 + -2.3

Or see this region's nucleotide sequence