Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3392.1 and Xcc-8004.3393.1 are separated by 91 nucleotides Xcc-8004.3393.1 and Xcc-8004.3394.1 are separated by 134 nucleotides Xcc-8004.3394.1 and Xcc-8004.3395.1 are separated by 2 nucleotides Xcc-8004.3395.1 and Xcc-8004.3396.1 overlap by 4 nucleotides
Xcc-8004.3392.1: Xcc-8004.3392.1 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8), at 3,285,808 to 3,286,770
Xcc-8004.3392.1
Xcc-8004.3393.1: Xcc-8004.3393.1 - Glutathione peroxidase family protein, at 3,286,862 to 3,287,419
Xcc-8004.3393.1
Xcc-8004.3394.1: Xcc-8004.3394.1 - hypothetical protein, at 3,287,554 to 3,287,802
Xcc-8004.3394.1
Xcc-8004.3395.1: Xcc-8004.3395.1 - Transcriptional regulator, GntR family, at 3,287,805 to 3,288,167
Xcc-8004.3395.1
Xcc-8004.3396.1: Xcc-8004.3396.1 - ABC-type multidrug transport system, ATPase component, at 3,288,164 to 3,289,039
Xcc-8004.3396.1
Position (kb) 3287
3288 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 3286.622 kb on + strand, within Xcc-8004.3392.1 at 3286.623 kb on - strand, within Xcc-8004.3392.1 at 3286.623 kb on - strand, within Xcc-8004.3392.1 at 3286.623 kb on - strand, within Xcc-8004.3392.1 at 3286.623 kb on - strand, within Xcc-8004.3392.1 at 3286.736 kb on - strand at 3286.974 kb on + strand, within Xcc-8004.3393.1 at 3286.974 kb on + strand, within Xcc-8004.3393.1 at 3286.974 kb on + strand, within Xcc-8004.3393.1 at 3286.974 kb on + strand, within Xcc-8004.3393.1 at 3286.974 kb on + strand, within Xcc-8004.3393.1 at 3286.974 kb on + strand, within Xcc-8004.3393.1 at 3286.974 kb on + strand, within Xcc-8004.3393.1 at 3286.974 kb on + strand, within Xcc-8004.3393.1 at 3286.974 kb on + strand, within Xcc-8004.3393.1 at 3286.975 kb on - strand, within Xcc-8004.3393.1 at 3286.975 kb on - strand, within Xcc-8004.3393.1 at 3286.975 kb on - strand, within Xcc-8004.3393.1 at 3287.028 kb on + strand, within Xcc-8004.3393.1 at 3287.029 kb on - strand, within Xcc-8004.3393.1 at 3287.029 kb on - strand, within Xcc-8004.3393.1 at 3287.091 kb on + strand, within Xcc-8004.3393.1 at 3287.091 kb on + strand, within Xcc-8004.3393.1 at 3287.091 kb on + strand, within Xcc-8004.3393.1 at 3287.091 kb on + strand, within Xcc-8004.3393.1 at 3287.092 kb on - strand, within Xcc-8004.3393.1 at 3287.092 kb on - strand, within Xcc-8004.3393.1 at 3287.092 kb on - strand, within Xcc-8004.3393.1 at 3287.092 kb on - strand, within Xcc-8004.3393.1 at 3287.092 kb on - strand, within Xcc-8004.3393.1 at 3287.092 kb on - strand, within Xcc-8004.3393.1 at 3287.092 kb on - strand, within Xcc-8004.3393.1 at 3287.223 kb on + strand, within Xcc-8004.3393.1 at 3287.223 kb on + strand, within Xcc-8004.3393.1 at 3287.224 kb on - strand, within Xcc-8004.3393.1 at 3287.224 kb on - strand, within Xcc-8004.3393.1 at 3287.224 kb on - strand, within Xcc-8004.3393.1 at 3287.224 kb on - strand, within Xcc-8004.3393.1 at 3287.224 kb on - strand, within Xcc-8004.3393.1 at 3287.224 kb on - strand, within Xcc-8004.3393.1 at 3287.224 kb on - strand, within Xcc-8004.3393.1 at 3287.287 kb on + strand, within Xcc-8004.3393.1 at 3287.287 kb on + strand, within Xcc-8004.3393.1 at 3287.287 kb on + strand, within Xcc-8004.3393.1 at 3287.288 kb on - strand, within Xcc-8004.3393.1 at 3287.329 kb on - strand, within Xcc-8004.3393.1 at 3287.390 kb on + strand at 3287.390 kb on + strand at 3287.390 kb on + strand at 3287.431 kb on + strand at 3287.431 kb on + strand at 3287.431 kb on + strand at 3287.431 kb on + strand at 3287.432 kb on - strand at 3287.432 kb on - strand at 3287.432 kb on - strand at 3287.432 kb on - strand at 3287.432 kb on - strand at 3287.478 kb on + strand at 3287.478 kb on + strand at 3287.478 kb on + strand at 3287.479 kb on - strand at 3287.479 kb on - strand at 3287.479 kb on - strand at 3287.479 kb on - strand at 3287.571 kb on + strand at 3287.571 kb on + strand at 3287.572 kb on - strand at 3287.572 kb on - strand at 3287.572 kb on - strand at 3287.668 kb on + strand, within Xcc-8004.3394.1 at 3287.669 kb on - strand, within Xcc-8004.3394.1 at 3287.764 kb on + strand, within Xcc-8004.3394.1 at 3287.764 kb on + strand, within Xcc-8004.3394.1 at 3287.765 kb on - strand, within Xcc-8004.3394.1 at 3287.765 kb on - strand, within Xcc-8004.3394.1 at 3287.765 kb on - strand, within Xcc-8004.3394.1 at 3287.841 kb on + strand at 3287.841 kb on + strand at 3287.842 kb on - strand, within Xcc-8004.3395.1 at 3287.842 kb on - strand, within Xcc-8004.3395.1 at 3287.842 kb on - strand, within Xcc-8004.3395.1 at 3287.842 kb on - strand, within Xcc-8004.3395.1 at 3287.937 kb on + strand, within Xcc-8004.3395.1 at 3287.938 kb on - strand, within Xcc-8004.3395.1 at 3287.970 kb on + strand, within Xcc-8004.3395.1 at 3287.971 kb on - strand, within Xcc-8004.3395.1 at 3287.971 kb on - strand, within Xcc-8004.3395.1 at 3288.218 kb on + strand at 3288.219 kb on - strand at 3288.219 kb on - strand at 3288.219 kb on - strand at 3288.219 kb on - strand at 3288.219 kb on - strand at 3288.219 kb on - strand at 3288.219 kb on - strand at 3288.219 kb on - strand at 3288.219 kb on - strand at 3288.219 kb on - strand at 3288.683 kb on + strand, within Xcc-8004.3396.1 at 3288.683 kb on + strand, within Xcc-8004.3396.1 at 3288.683 kb on + strand, within Xcc-8004.3396.1 at 3288.684 kb on - strand, within Xcc-8004.3396.1 at 3288.684 kb on - strand, within Xcc-8004.3396.1 at 3288.684 kb on - strand, within Xcc-8004.3396.1 at 3288.704 kb on + strand, within Xcc-8004.3396.1 at 3288.704 kb on + strand, within Xcc-8004.3396.1 at 3288.705 kb on - strand, within Xcc-8004.3396.1 at 3288.705 kb on - strand, within Xcc-8004.3396.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 3,286,622 + Xcc-8004.3392.1 0.85 -0.2 3,286,623 - Xcc-8004.3392.1 0.85 +2.7 3,286,623 - Xcc-8004.3392.1 0.85 +0.9 3,286,623 - Xcc-8004.3392.1 0.85 -0.3 3,286,623 - Xcc-8004.3392.1 0.85 -1.2 3,286,736 - +1.3 3,286,974 + Xcc-8004.3393.1 0.20 +0.3 3,286,974 + Xcc-8004.3393.1 0.20 +0.5 3,286,974 + Xcc-8004.3393.1 0.20 -1.7 3,286,974 + Xcc-8004.3393.1 0.20 -0.9 3,286,974 + Xcc-8004.3393.1 0.20 -0.2 3,286,974 + Xcc-8004.3393.1 0.20 +1.4 3,286,974 + Xcc-8004.3393.1 0.20 -1.7 3,286,974 + Xcc-8004.3393.1 0.20 -3.1 3,286,974 + Xcc-8004.3393.1 0.20 +0.2 3,286,975 - Xcc-8004.3393.1 0.20 +1.5 3,286,975 - Xcc-8004.3393.1 0.20 +0.4 3,286,975 - Xcc-8004.3393.1 0.20 -0.5 3,287,028 + Xcc-8004.3393.1 0.30 -1.1 3,287,029 - Xcc-8004.3393.1 0.30 -0.9 3,287,029 - Xcc-8004.3393.1 0.30 -0.7 3,287,091 + Xcc-8004.3393.1 0.41 +1.4 3,287,091 + Xcc-8004.3393.1 0.41 +1.9 3,287,091 + Xcc-8004.3393.1 0.41 -0.7 3,287,091 + Xcc-8004.3393.1 0.41 -0.5 3,287,092 - Xcc-8004.3393.1 0.41 +0.9 3,287,092 - Xcc-8004.3393.1 0.41 -2.5 3,287,092 - Xcc-8004.3393.1 0.41 -0.3 3,287,092 - Xcc-8004.3393.1 0.41 -1.4 3,287,092 - Xcc-8004.3393.1 0.41 -1.3 3,287,092 - Xcc-8004.3393.1 0.41 -2.7 3,287,092 - Xcc-8004.3393.1 0.41 +2.5 3,287,223 + Xcc-8004.3393.1 0.65 -0.9 3,287,223 + Xcc-8004.3393.1 0.65 +0.7 3,287,224 - Xcc-8004.3393.1 0.65 +0.1 3,287,224 - Xcc-8004.3393.1 0.65 +1.7 3,287,224 - Xcc-8004.3393.1 0.65 -0.2 3,287,224 - Xcc-8004.3393.1 0.65 +0.6 3,287,224 - Xcc-8004.3393.1 0.65 -0.7 3,287,224 - Xcc-8004.3393.1 0.65 -1.3 3,287,224 - Xcc-8004.3393.1 0.65 -0.7 3,287,287 + Xcc-8004.3393.1 0.76 -1.4 3,287,287 + Xcc-8004.3393.1 0.76 +0.5 3,287,287 + Xcc-8004.3393.1 0.76 -0.4 3,287,288 - Xcc-8004.3393.1 0.76 -3.1 3,287,329 - Xcc-8004.3393.1 0.84 +2.3 3,287,390 + -1.5 3,287,390 + +1.6 3,287,390 + +6.2 3,287,431 + -0.7 3,287,431 + -0.7 3,287,431 + -1.2 3,287,431 + -3.1 3,287,432 - +0.9 3,287,432 - -0.9 3,287,432 - -0.9 3,287,432 - +1.0 3,287,432 - -0.4 3,287,478 + -1.1 3,287,478 + +0.4 3,287,478 + +1.2 3,287,479 - +0.3 3,287,479 - -0.8 3,287,479 - -0.2 3,287,479 - -0.2 3,287,571 + -2.7 3,287,571 + +0.6 3,287,572 - +1.1 3,287,572 - -0.5 3,287,572 - -0.8 3,287,668 + Xcc-8004.3394.1 0.46 -0.8 3,287,669 - Xcc-8004.3394.1 0.46 -2.6 3,287,764 + Xcc-8004.3394.1 0.84 -0.1 3,287,764 + Xcc-8004.3394.1 0.84 -0.8 3,287,765 - Xcc-8004.3394.1 0.85 +0.9 3,287,765 - Xcc-8004.3394.1 0.85 -3.7 3,287,765 - Xcc-8004.3394.1 0.85 -2.1 3,287,841 + -1.4 3,287,841 + -1.3 3,287,842 - Xcc-8004.3395.1 0.10 -1.8 3,287,842 - Xcc-8004.3395.1 0.10 -1.1 3,287,842 - Xcc-8004.3395.1 0.10 -2.0 3,287,842 - Xcc-8004.3395.1 0.10 +0.2 3,287,937 + Xcc-8004.3395.1 0.36 -0.8 3,287,938 - Xcc-8004.3395.1 0.37 +0.2 3,287,970 + Xcc-8004.3395.1 0.45 -0.8 3,287,971 - Xcc-8004.3395.1 0.46 +2.5 3,287,971 - Xcc-8004.3395.1 0.46 -1.3 3,288,218 + +1.5 3,288,219 - +0.3 3,288,219 - -0.8 3,288,219 - +0.1 3,288,219 - -1.2 3,288,219 - +0.1 3,288,219 - +0.3 3,288,219 - +0.4 3,288,219 - +0.9 3,288,219 - +0.2 3,288,219 - -2.5 3,288,683 + Xcc-8004.3396.1 0.59 -0.8 3,288,683 + Xcc-8004.3396.1 0.59 +2.7 3,288,683 + Xcc-8004.3396.1 0.59 -0.2 3,288,684 - Xcc-8004.3396.1 0.59 -2.9 3,288,684 - Xcc-8004.3396.1 0.59 +0.3 3,288,684 - Xcc-8004.3396.1 0.59 -0.3 3,288,704 + Xcc-8004.3396.1 0.62 -1.2 3,288,704 + Xcc-8004.3396.1 0.62 +0.2 3,288,705 - Xcc-8004.3396.1 0.62 +2.7 3,288,705 - Xcc-8004.3396.1 0.62 +1.2
Or see this region's nucleotide sequence